Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G1651 Cannabis sativa HOM05D006755 ORTHO05D008472 1.6e-130 469.9 333 100.0
CANSAT25G1067 Cannabis sativa HOM05D006755 ORTHO05D008472 1.5e-128 463.4 333 98.8
Thecc.02G149300 Theobroma cacao HOM05D006755 ORTHO05D008472 1.7e-47 194.1 308 66.6
PGR142G2394 Punica granatum HOM05D006755 ORTHO05D008472 5.4e-46 189.1 310 65.2
AL7G10050 Arabidopsis lyrata HOM05D006755 ORTHO05D008472 2.1e-45 187.2 266 69.2
Carub.0007s0004 Capsella rubella HOM05D006755 ORTHO05D008472 3.5e-45 186.4 271 71.2
Prupe.8G183200 Prunus persica HOM05D006755 ORTHO05D008472 4.6e-45 186.0 337 65.3
Sp7g37600 Schrenkiella parvula HOM05D006755 ORTHO05D008472 4.6e-45 186.0 262 74.0
BcaC06g31423 Brassica carinata HOM05D006755 ORTHO05D008472 3.0e-44 183.3 275 66.9
Thhalv10005467m.g Eutrema salsugineum HOM05D006755 ORTHO05D008472 1.1e-43 181.4 264 73.5
Duzib052G1107 Durio zibethinus HOM05D006755 ORTHO05D008472 4.3e-43 179.5 306 65.7
Solyc12g096140.3 Solanum lycopersicum HOM05D006755 ORTHO05D008472 4.0e-41 172.9 311 66.2
Aa31LG6G16930 Aethionema arabicum HOM05D006755 ORTHO05D008472 1.2e-40 171.4 294 63.3
BcaC06g34295 Brassica carinata HOM05D006755 ORTHO05D008472 2.0e-40 170.6 289 68.2
CARHR293910 Cardamine hirsuta HOM05D006755 ORTHO05D008472 2.6e-40 170.2 275 68.0
BolC7t43606H Brassica oleracea HOM05D006755 ORTHO05D008472 3.4e-40 169.9 289 67.8
Duzib132G0679 Durio zibethinus HOM05D006755 ORTHO05D008472 3.4e-40 169.9 304 64.1
BraA06t27405Z Brassica rapa HOM05D006755 ORTHO05D008472 4.4e-40 169.5 261 71.6
COL.COLO4_04807 Corchorus olitorius HOM05D006755 ORTHO05D008472 4.4e-40 169.5 320 63.8
Gohir.D13G058100 Gossypium hirsutum HOM05D006755 ORTHO05D008472 4.4e-40 169.5 276 70.3
A06p45360 Brassica napus HOM05D006755 ORTHO05D008472 5.8e-40 169.1 261 71.6
THA.LOC104823440 Tarenaya hassleriana HOM05D006755 ORTHO05D008472 7.6e-40 168.7 275 66.2
Sopen12g032020 Solanum pennellii HOM05D006755 ORTHO05D008472 1.7e-39 167.5 314 64.3
Glyma.11G065700 Glycine max HOM05D006755 ORTHO05D008472 2.2e-39 167.2 310 61.3
Gorai.013G065500 Gossypium raimondii HOM05D006755 ORTHO05D008472 2.2e-39 167.2 322 62.7
Manes.15G113000 Manihot esculenta HOM05D006755 ORTHO05D008472 2.2e-39 167.2 323 61.9
Cc08_g09000 Coffea canephora HOM05D006755 ORTHO05D008472 2.9e-39 166.8 337 52.2
C07p30650 Brassica napus HOM05D006755 ORTHO05D008472 3.8e-39 166.4 264 71.2
MD05G1145100 Malus domestica HOM05D006755 ORTHO05D008472 3.8e-39 166.4 315 64.4
Nitab4.5_0009982g0010 Nicotiana tabacum HOM05D006755 ORTHO05D008472 6.4e-39 165.6 314 64.0
Eucgr.I01549 Eucalyptus grandis HOM05D006755 ORTHO05D008472 1.1e-38 164.9 353 60.3
Migut.E01827 Erythranthe guttata HOM05D006755 ORTHO05D008472 1.9e-38 164.1 316 63.3
Glyma.01G176900 Glycine max HOM05D006755 ORTHO05D008472 1.9e-38 164.1 313 60.4
MSTRG.1737 Avicennia marina HOM05D006755 ORTHO05D008472 2.4e-38 163.7 265 70.6
Gohir.A13G063800 Gossypium hirsutum HOM05D006755 ORTHO05D008472 2.4e-38 163.7 280 54.6
Hma1.2p1_0052F.1_g030470 Hydrangea macrophylla HOM05D006755 ORTHO05D008472 2.4e-38 163.7 257 72.0
Nitab4.5_0002859g0100 Nicotiana tabacum HOM05D006755 ORTHO05D008472 4.2e-38 162.9 330 60.0
Phvul.002G027800 Phaseolus vulgaris HOM05D006755 ORTHO05D008472 4.2e-38 162.9 347 59.1
VMungo1215G0649 Vigna mungo HOM05D006755 ORTHO05D008472 4.2e-38 162.9 324 60.8
Peaxi162Scf00876g00046 Petunia axillaris HOM05D006755 ORTHO05D008472 7.1e-38 162.2 343 60.3
TPR.G18806 Trifolium pratense HOM05D006755 ORTHO05D008472 1.2e-37 161.4 323 61.9
Oeu033356.1 Olea europaea HOM05D006755 ORTHO05D008472 1.6e-37 161.0 271 67.5
arahy.Tifrunner.gnm1.ann1.0IBU2N Arachis hypogaea HOM05D006755 ORTHO05D008472 2.1e-37 160.6 344 59.9
arahy.Tifrunner.gnm1.ann1.HWJ5MG Arachis hypogaea HOM05D006755 ORTHO05D008472 2.7e-37 160.2 344 59.6
CSS0044736 Camellia sinensis var. sinensis HOM05D006755 ORTHO05D008472 2.7e-37 160.2 222 79.3
Nitab4.5_0000943g0100 Nicotiana tabacum HOM05D006755 ORTHO05D008472 2.7e-37 160.2 311 64.3
SGA_v2.0_scaffold21G09644 Striga asiatica HOM05D006755 ORTHO05D008472 2.7e-37 160.2 261 70.9
EL10Ac9g21570 Beta vulgaris HOM05D006755 ORTHO05D008472 4.6e-37 159.5 228 77.2
PGSC0003DMG400029290 Solanum tuberosum HOM05D006755 ORTHO05D008472 7.8e-37 158.7 347 57.9
Psat2g160920 Pisum sativum HOM05D006755 ORTHO05D008472 1.0e-36 158.3 253 71.5
AT4G38150 Arabidopsis thaliana HOM05D006755 ORTHO05D008472 1.3e-36 157.9 285 64.6
CAN.G947.37 Capsicum annuum HOM05D006755 ORTHO05D008472 1.7e-36 157.5 320 62.8
TAR376G0479 Trochodendron aralioides HOM05D006755 ORTHO05D008472 1.7e-36 157.5 233 76.8
Nn6g31560 Nelumbo nucifera HOM05D006755 ORTHO05D008472 3.0e-36 156.8 280 65.4
QL11p057006 Quercus lobata HOM05D006755 ORTHO05D008472 3.0e-36 156.8 265 66.0
Lj9P409T68 Lonicera japonica HOM05D006755 ORTHO05D008472 3.9e-36 156.4 285 65.6
Lj2g0006557 Lotus japonicus HOM05D006755 ORTHO05D008472 3.9e-36 156.4 301 63.8
Aqoxy4G02640 Aquilegia oxysepala HOM05D006755 ORTHO05D008472 1.1e-35 154.8 253 71.9
Os01g0546500 Oryza sativa ssp. japonica HOM05D006755 ORTHO05D008472 1.5e-35 154.5 231 73.6
PSO541G3341 Papaver somniferum HOM05D006755 ORTHO05D008472 1.5e-35 154.5 247 53.8
Rhsim12G0052500 Rhododendron simsii HOM05D006755 ORTHO05D008472 5.6e-35 152.5 309 62.8
Actinidia26119 Actinidia chinensis HOM05D006755 ORTHO05D008472 7.3e-35 152.1 189 85.2
TWI75G0077 Tripterygium wilfordii HOM05D006755 ORTHO05D008472 7.3e-35 152.1 319 62.4
SHI05798 Sapria himalayana HOM05D006755 ORTHO05D008472 1.6e-34 151.0 200 79.0
PSO675G0405 Papaver somniferum HOM05D006755 ORTHO05D008472 2.8e-34 150.2 215 58.1
CDE02G4616 Ceratophyllum demersum HOM05D006755 ORTHO05D008472 6.2e-34 149.1 324 58.6
Medtr8g098445 Medicago truncatula HOM05D006755 ORTHO05D008472 6.2e-34 149.1 235 72.8
HanXRQChr07g0186241 Helianthus annuus HOM05D006755 ORTHO05D008472 8.1e-34 148.7 263 62.4
CiPaw.06G113100 Carya illinoinensis HOM05D006755 ORTHO05D008472 1.1e-33 148.3 275 64.4
ECA233G3571 Erigeron canadensis HOM05D006755 ORTHO05D008472 1.8e-33 147.5 268 61.9
Ca_00389_v3 Cicer arietinum L. HOM05D006755 ORTHO05D008472 2.4e-33 147.1 374 54.8
Ciclev10028759m.g Citrus clementina HOM05D006755 ORTHO05D008472 2.4e-33 147.1 331 59.8
Nitab4.5_0001968g0030 Nicotiana tabacum HOM05D006755 ORTHO05D008472 5.3e-33 146.0 215 77.2
Sabra04G0141300 Salix brachista HOM05D006755 ORTHO05D008472 5.3e-33 146.0 274 66.1
Aqoxy6G03058 Aquilegia oxysepala HOM05D006755 ORTHO05D008472 1.2e-32 144.8 276 65.6
HPP92_007220 Vanilla planifolia HOM05D006755 ORTHO05D008472 3.4e-32 143.3 268 67.2
Peaxi162Scf00193g00005 Petunia axillaris HOM05D006755 ORTHO05D008472 5.8e-32 142.5 313 61.3
Zm00001eb342190 Zea mays HOM05D006755 ORTHO05D008472 5.8e-32 142.5 266 61.7
CDE04G3036 Ceratophyllum demersum HOM05D006755 ORTHO05D008472 1.3e-31 141.4 277 62.1
Lalb_Chr09g0322551 Lupinus albus HOM05D006755 ORTHO05D008472 1.3e-31 141.4 272 62.9
Dinv41852 Davidia involucrata HOM05D006755 ORTHO05D008472 2.2e-31 140.6 308 61.0
Lj2g0026453 Lotus japonicus HOM05D006755 ORTHO05D008472 4.9e-31 139.4 316 59.2
Cfa005407 Carpinus fangiana HOM05D006755 ORTHO05D008472 6.4e-31 139.0 280 60.4
Medtr5g019860 Medicago truncatula HOM05D006755 ORTHO05D008472 6.4e-31 139.0 235 71.5
FAN15G2937 Fragaria x ananassa HOM05D006755 ORTHO05D008472 2.4e-30 137.1 300 61.3
HPP92_025325 Vanilla planifolia HOM05D006755 ORTHO05D008472 3.2e-30 136.7 258 66.3
AUR62010217 Chenopodium quinoa HOM05D006755 ORTHO05D008472 4.2e-30 136.3 222 73.0
FvH4_2g17180 Fragaria vesca HOM05D006755 ORTHO05D008472 4.2e-30 136.3 300 61.7
vmacro08131 Vaccinium macrocarpon HOM05D006755 ORTHO05D008472 5.4e-30 136.0 187 82.4
Sc18g0006850 Simmondsia chinensis HOM05D006755 ORTHO05D008472 7.1e-30 135.6 246 70.7
Lsat_1_v5_gn_6_28960 Lactuca sativa HOM05D006755 ORTHO05D008472 1.2e-29 134.8 257 66.9
Potri.004G209500 Populus trichocarpa HOM05D006755 ORTHO05D008472 3.5e-29 133.3 271 63.8
DCAR_025005 Daucus carota HOM05D006755 ORTHO05D008472 4.6e-29 132.9 308 59.4
CsaV3_7G002250 Cucumis sativus L. HOM05D006755 ORTHO05D008472 6.0e-29 132.5 245 68.6
Sed0010179 Sechium edule HOM05D006755 ORTHO05D008472 1.0e-28 131.7 347 55.3
Ah.01g010520 Amaranthus hybridus HOM05D006755 ORTHO05D008472 2.3e-28 130.6 269 63.6
RcHm_v2.0_Chr6g0281671 Rosa chinensis HOM05D006755 ORTHO05D008472 2.3e-28 130.6 333 57.1
FAN27G0618 Fragaria x ananassa HOM05D006755 ORTHO05D008472 3.0e-28 130.2 300 61.0
AUR62013213 Chenopodium quinoa HOM05D006755 ORTHO05D008472 6.2e-26 122.5 240 67.1
SalBow1G4250 Salvia bowleyana HOM05D006755 ORTHO05D008472 1.4e-25 121.3 274 47.1
MELO3C024165.2 Cucumis melo HOM05D006755 ORTHO05D008472 3.1e-25 120.2 356 54.8
Nn3g19301 Nelumbo nucifera HOM05D006755 ORTHO05D008472 2.6e-24 117.1 154 49.4
MBI01_g31986_MAGBIO Magnolia biondii HOM05D006755 ORTHO05D008472 1.1e-22 111.7 193 76.7
Nn1g06229 Nelumbo nucifera HOM05D006755 ORTHO05D008472 5.4e-22 109.4 104 61.5
Actinidia20592 Actinidia chinensis HOM05D006755 ORTHO05D008472 9.3e-22 108.6 58 89.7
Haze_01948 Corylus avellana HOM05D006755 ORTHO05D008472 9.3e-22 108.6 149 49.0
GSVIVG01023844001 Vitis vinifera HOM05D006755 ORTHO05D008472 1.6e-21 107.8 384 31.2
Ah.01g017780 Amaranthus hybridus HOM05D006755 ORTHO05D008472 2.3e-20 104.0 221 66.5
ATR0605G371 Amborella trichopoda HOM05D006755 ORTHO05D008472 2.3e-20 104.0 179 42.5
ClCG02G003160 Citrullus lanatus HOM05D006755 ORTHO05D008472 1.1e-19 101.7 358 51.1
Hund00104 Selenicereus undatus HOM05D006755 ORTHO05D001720 1.5e-19 101.3 100 58.0
Nn6g31556 Nelumbo nucifera HOM05D006755 ORTHO05D008472 1.4e-17 94.7 172 54.7
SEGI_20822 Sequoiadendron giganteum HOM05D006755 ORTHO05D008472 1.4e-17 94.7 182 74.2
Sed0025141 Sechium edule HOM05D006755 ORTHO05D008472 1.0e-15 88.6 204 36.8
ATR0693G165 Amborella trichopoda HOM05D002804 ORTHO05D003755 5.1e-12 76.3 61 57.4
Lj6P318T4 Lonicera japonica HOM05D006755 ORTHO05D008472 3.3e-11 73.6 36 97.2
TAR636G2693 Trochodendron aralioides HOM05D002804 ORTHO05D003755 4.3e-11 73.2 61 55.7
Nn5g27913 Nelumbo nucifera HOM05D002804 ORTHO05D003755 2.8e-10 70.5 83 49.4
FAN05G1021 Fragaria x ananassa HOM05D002804 ORTHO05D003755 6.9e-09 65.9 61 50.8
PSO357G0404 Papaver somniferum HOM05D002804 ORTHO05D003755 1.5e-08 64.7 85 47.1
MD05G1145400 Malus domestica HOM05D006755 ORTHO05D008472 2.0e-08 64.3 149 78.5
PSO170G1624 Papaver somniferum HOM05D002804 ORTHO05D003755 2.0e-08 64.3 85 47.1
PGSC0003DMG400018230 Solanum tuberosum HOM05D002804 ORTHO05D003755 2.0e-08 64.3 61 47.5
Os06g0308200 Oryza sativa ssp. japonica HOM05D002804 ORTHO05D003755 2.6e-08 63.9 61 45.9
RcHm_v2.0_Chr3g0459231 Rosa chinensis HOM05D002804 ORTHO05D003755 5.8e-08 62.8 61 49.2
Sabra13G0000100 Salix brachista HOM05D002804 ORTHO05D003755 5.8e-08 62.8 71 47.9
Rhsim11G0111400 Rhododendron simsii HOM05D002962 ORTHO05D003280 1.0e-07 62.0 61 47.5
Eucgr.B01359 Eucalyptus grandis HOM05D002804 ORTHO05D003755 1.3e-07 61.6 61 47.5
FAN14G2492 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.7e-07 61.2 61 47.5
Nn5g27110 Nelumbo nucifera HOM05D006755 ORTHO05D008472 1.7e-07 61.2 146 71.9
Oeu053880.1 Olea europaea HOM05D043847 ORTHO05D008472 1.7e-07 61.2 43 69.8
Lj5g0005878 Lotus japonicus HOM05D002804 ORTHO05D003755 5.0e-07 59.7 62 48.4
Lsat_1_v5_gn_9_84161 Lactuca sativa HOM05D002804 ORTHO05D003755 8.4e-07 58.9 104 37.5
Peaxi162Scf00194g00635 Petunia axillaris HOM05D002804 ORTHO05D003755 1.1e-06 58.5 115 33.9
Aqoxy1G02792 Aquilegia oxysepala HOM05D002804 ORTHO05D003755 1.4e-06 58.2 48 52.1
Cpa.g.sc14.234 Carica papaya HOM05D002804 ORTHO05D003755 1.4e-06 58.2 136 33.8
PGR119G1767 Punica granatum HOM05D002804 ORTHO05D003755 1.9e-06 57.8 117 36.8
VMungo0720G2485 Vigna mungo HOM05D002804 ORTHO05D003755 1.9e-06 57.8 62 45.2
Gohir.A09G116900 Gossypium hirsutum HOM05D002804 ORTHO05D003755 3.2e-06 57.0 123 33.3
Glyma.20G089500 Glycine max HOM05D002804 ORTHO05D003755 4.2e-06 56.6 99 36.4
Peaxi162Scf00194g00625 Petunia axillaris HOM05D002804 ORTHO05D003755 5.5e-06 56.2 124 31.5
TPR.G3051 Trifolium pratense HOM05D002804 ORTHO05D003755 5.5e-06 56.2 93 35.5


User provided reference genes

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