Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G1562 Cannabis sativa HOM05D005242 ORTHO05D006778 1.2e-170 603.2 325 100.0
QL02p039039 Quercus lobata HOM05D005242 ORTHO05D006778 8.7e-49 198.4 146 67.8
Oeu011949.1 Olea europaea HOM05D005242 ORTHO05D006778 1.3e-47 194.5 323 41.2
FAN20G3127 Fragaria x ananassa HOM05D005242 ORTHO05D006778 4.8e-47 192.6 366 38.5
Haze_17757 Corylus avellana HOM05D005242 ORTHO05D006778 8.1e-47 191.8 206 53.4
FAN15G2695 Fragaria x ananassa HOM05D005242 ORTHO05D006778 8.1e-47 191.8 366 38.8
MD10G1026100 Malus domestica HOM05D005242 ORTHO05D006778 1.1e-46 191.4 267 47.6
FAN27G0674 Fragaria x ananassa HOM05D005242 ORTHO05D006778 1.8e-46 190.7 366 37.7
MD05G1026800 Malus domestica HOM05D005242 ORTHO05D006778 2.4e-46 190.3 266 48.5
Manes.02G179900 Manihot esculenta HOM05D005242 ORTHO05D006778 5.3e-46 189.1 456 34.9
Peaxi162Scf00599g00049 Petunia axillaris HOM05D005242 ORTHO05D006778 6.9e-46 188.7 335 38.2
Atru.chr13.2099 Acer truncatum HOM05D005242 ORTHO05D006778 1.2e-45 188.0 257 44.4
PGR042G2442 Punica granatum HOM05D005242 ORTHO05D006778 2.0e-45 187.2 328 39.9
FAN24G0150 Fragaria x ananassa HOM05D005242 ORTHO05D006778 3.4e-45 186.4 352 38.9
Rhsim11G0083400 Rhododendron simsii HOM05D005242 ORTHO05D006778 3.4e-45 186.4 257 47.1
vmacro01456 Vaccinium macrocarpon HOM05D005242 ORTHO05D006778 3.4e-45 186.4 370 38.4
Cfa018319 Carpinus fangiana HOM05D005242 ORTHO05D006778 4.5e-45 186.0 198 55.6
Duzib041G0461 Durio zibethinus HOM05D005242 ORTHO05D006778 7.6e-45 185.3 145 68.3
Sabra05G0147300 Salix brachista HOM05D005242 ORTHO05D006778 1.7e-44 184.1 311 42.1
Potri.005G192700 Populus trichocarpa HOM05D005242 ORTHO05D006778 3.8e-44 183.0 229 50.2
arahy.Tifrunner.gnm1.ann1.3DXP20 Arachis hypogaea HOM05D005242 ORTHO05D006778 4.9e-44 182.6 221 49.3
arahy.Tifrunner.gnm1.ann1.661UAU Arachis hypogaea HOM05D005242 ORTHO05D006778 1.1e-43 181.4 221 48.4
RcHm_v2.0_Chr6g0275301 Rosa chinensis HOM05D005242 ORTHO05D006778 1.1e-43 181.4 361 36.3
Eucgr.F02701 Eucalyptus grandis HOM05D005242 ORTHO05D006778 1.4e-43 181.0 326 39.3
Potri.002G067700 Populus trichocarpa HOM05D005242 ORTHO05D006778 1.9e-43 180.6 446 34.1
CiPaw.16G012200 Carya illinoinensis HOM05D005242 ORTHO05D006778 2.5e-43 180.3 239 47.7
COL.COLO4_08566 Corchorus olitorius HOM05D005242 ORTHO05D006778 4.2e-43 179.5 145 66.2
Nn5g28757 Nelumbo nucifera HOM05D005242 ORTHO05D006778 4.2e-43 179.5 353 36.5
Peaxi162Scf01294g00121 Petunia axillaris HOM05D005242 ORTHO05D006778 4.2e-43 179.5 333 37.2
AUR62026703 Chenopodium quinoa HOM05D005242 ORTHO05D006778 7.1e-43 178.7 323 40.2
CAN.G268.26 Capsicum annuum HOM05D005242 ORTHO05D006778 1.2e-42 177.9 327 36.1
AUR62013591 Chenopodium quinoa HOM05D005242 ORTHO05D006778 2.1e-42 177.2 323 40.6
Aqoxy5G02077 Aquilegia oxysepala HOM05D005242 ORTHO05D006778 2.7e-42 176.8 294 41.5
PSO447G0326 Papaver somniferum HOM05D005242 ORTHO05D006778 2.7e-42 176.8 151 58.9
Ciclev10003945m.g Citrus clementina HOM05D005242 ORTHO05D006778 4.6e-42 176.0 234 47.0
Dinv25870 Davidia involucrata HOM05D005242 ORTHO05D006778 4.6e-42 176.0 369 38.8
Prupe.8G031300 Prunus persica HOM05D005242 ORTHO05D006778 7.9e-42 175.3 235 46.4
Nitab4.5_0001062g0060 Nicotiana tabacum HOM05D005242 ORTHO05D006778 3.9e-41 172.9 344 36.0
Nitab4.5_0010749g0010 Nicotiana tabacum HOM05D005242 ORTHO05D006778 5.1e-41 172.6 333 37.5
Sopen04g027460 Solanum pennellii HOM05D005242 ORTHO05D006778 8.7e-41 171.8 327 37.6
Thecc.08G153500 Theobroma cacao HOM05D005242 ORTHO05D006778 8.7e-41 171.8 164 59.1
PSO210G0022 Papaver somniferum HOM05D005242 ORTHO05D006778 3.3e-40 169.9 263 43.0
GSVIVG01034538001 Vitis vinifera HOM05D005242 ORTHO05D006778 4.3e-40 169.5 369 35.8
PGSC0003DMG400024099 Solanum tuberosum HOM05D005242 ORTHO05D006778 5.7e-40 169.1 323 37.5
TPR.G31185 Trifolium pratense HOM05D004559 ORTHO05D005283 9.6e-40 168.3 211 47.9
CSS0002508 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 1.3e-39 167.9 267 43.8
SalBow6G1825 Salvia bowleyana HOM05D005242 ORTHO05D006778 2.8e-39 166.8 377 34.7
CSS0020035 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 3.7e-39 166.4 267 43.4
Actinidia29532 Actinidia chinensis HOM05D005242 ORTHO05D006778 4.8e-39 166.0 272 42.3
Cc10_g14420 Coffea canephora HOM05D005242 ORTHO05D006778 6.3e-39 165.6 322 36.6
Psat1g101840 Pisum sativum HOM05D005242 ORTHO05D006778 8.2e-39 165.2 295 40.7
Lj5g0003985 Lotus japonicus HOM05D005242 ORTHO05D006778 1.8e-38 164.1 182 51.6
DCAR_001139 Daucus carota HOM05D005242 ORTHO05D006778 5.3e-38 162.5 165 53.9
Lalb_Chr21g0305491 Lupinus albus HOM05D005242 ORTHO05D006778 5.3e-38 162.5 163 57.1
Psat6g192600 Pisum sativum HOM05D005242 ORTHO05D006778 9.0e-38 161.8 164 56.7
SGA_v2.0_scaffold19G08682 Striga asiatica HOM05D001302 ORTHO05D001107 9.0e-38 161.8 318 37.7
TWI60G0101 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 9.0e-38 161.8 321 36.8
VMungo0464G2160 Vigna mungo HOM05D005242 ORTHO05D006778 1.2e-37 161.4 259 42.5
arahy.Tifrunner.gnm1.ann1.BM3N3L Arachis hypogaea HOM05D005242 ORTHO05D006778 1.5e-37 161.0 177 52.0
Glyma.16G166700 Glycine max HOM05D005242 ORTHO05D006778 1.5e-37 161.0 159 54.1
Medtr1246s0010 Medicago truncatula HOM05D005242 ORTHO05D006778 1.5e-37 161.0 145 57.2
CiPaw.15G015900 Carya illinoinensis HOM05D005242 ORTHO05D006778 2.0e-37 160.6 474 30.6
Glyma.02G081300 Glycine max HOM05D005242 ORTHO05D006778 4.5e-37 159.5 216 45.8
Lj2g0024086 Lotus japonicus HOM05D005242 ORTHO05D006778 5.9e-37 159.1 302 38.1
Solyc04g071490.3 Solanum lycopersicum HOM05D005242 ORTHO05D006778 5.9e-37 159.1 335 36.1
arahy.Tifrunner.gnm1.ann1.H39N2I Arachis hypogaea HOM05D005242 ORTHO05D006778 7.6e-37 158.7 177 51.4
Gorai.009G254600 Gossypium raimondii HOM05D005242 ORTHO05D006778 7.6e-37 158.7 233 45.1
Gohir.A05G243801 Gossypium hirsutum HOM05D005242 ORTHO05D006778 2.2e-36 157.1 237 43.9
Lalb_Chr19g0130231 Lupinus albus HOM05D005242 ORTHO05D006778 2.9e-36 156.8 301 38.9
Sc26g0002570 Simmondsia chinensis HOM05D005242 ORTHO05D006778 5.0e-36 156.0 322 37.9
DCAR_014441 Daucus carota HOM05D005242 ORTHO05D006778 8.5e-36 155.2 343 32.4
Medtr1g098690 Medicago truncatula HOM05D005242 ORTHO05D006778 1.1e-35 154.8 174 50.6
CSS0021128 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 5.5e-35 152.5 319 37.0
Phvul.007G080300 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 7.2e-35 152.1 175 50.9
Carub.0002s2368 Capsella rubella HOM05D005242 ORTHO05D006778 9.3e-35 151.8 140 55.7
CARHR070310 Cardamine hirsuta HOM05D005242 ORTHO05D006778 2.1e-34 150.6 144 53.5
Glyma.10G224400 Glycine max HOM05D005242 ORTHO05D006778 2.1e-34 150.6 179 50.8
VMungo0720G2917 Vigna mungo HOM05D005242 ORTHO05D006778 2.1e-34 150.6 141 58.2
BraA02t07119Z Brassica rapa HOM05D005242 ORTHO05D006778 2.7e-34 150.2 153 51.0
Aa31LG4G6850 Aethionema arabicum HOM05D005242 ORTHO05D006778 6.1e-34 149.1 302 37.4
AT1G76770 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 7.9e-34 148.7 143 54.5
AT1G76780 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 1.8e-33 147.5 273 37.4
A02p20880 Brassica napus HOM05D005242 ORTHO05D006778 2.3e-33 147.1 145 51.0
Glyma.20G167400 Glycine max HOM05D005242 ORTHO05D006778 5.1e-33 146.0 182 50.5
C02p32790 Brassica napus HOM05D005242 ORTHO05D006778 6.7e-33 145.6 145 51.0
BcaC03g15701 Brassica carinata HOM05D005242 ORTHO05D006778 8.7e-33 145.2 145 51.0
THA.LOC104813717 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 1.1e-32 144.8 170 47.6
BraA02t07120Z Brassica rapa HOM05D005242 ORTHO05D018625 1.5e-32 144.4 255 36.9
Actinidia17789 Actinidia chinensis HOM05D005242 ORTHO05D006778 4.3e-32 142.9 325 34.8
EL10Ac1g01555 Beta vulgaris HOM05D005242 ORTHO05D006778 4.3e-32 142.9 331 34.1
A02p20890 Brassica napus HOM05D005242 ORTHO05D018625 4.3e-32 142.9 279 36.9
A07p42410 Brassica napus HOM05D005242 ORTHO05D006778 5.7e-32 142.5 140 50.7
AL2G36920 Arabidopsis lyrata HOM05D005242 ORTHO05D006778 2.8e-31 140.2 146 52.1
Aa31LG4G6840 Aethionema arabicum HOM05D005242 ORTHO05D006778 4.8e-31 139.4 133 54.9
THA.LOC104812037 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 8.2e-31 138.7 145 50.3
BolC2t09420H Brassica oleracea HOM05D005242 ORTHO05D018625 1.4e-30 137.9 153 48.4
BraA07t31767Z Brassica rapa HOM05D005242 ORTHO05D006778 1.4e-30 137.9 141 50.4
FvH4_2g13660 Fragaria vesca HOM05D005242 ORTHO05D006778 6.9e-30 135.6 314 34.4
Sc02g0004040 Simmondsia chinensis HOM05D005242 ORTHO05D006778 6.9e-30 135.6 192 43.2
Hund17437 Selenicereus undatus HOM05D005242 ORTHO05D006778 9.1e-30 135.2 284 34.9
C06p50980 Brassica napus HOM05D005242 ORTHO05D006778 1.2e-29 134.8 135 50.4
BolC6t40122H Brassica oleracea HOM05D005242 ORTHO05D006778 5.9e-29 132.5 133 50.4
CAN.G18.12 Capsicum annuum HOM05D005242 ORTHO05D006778 2.9e-28 130.2 320 33.1
Cpa.g.sc21.205 Carica papaya HOM05D005242 ORTHO05D006778 2.5e-27 127.1 377 33.4
Nitab4.5_0002487g0010 Nicotiana tabacum HOM05D001302 ORTHO05D001107 4.6e-26 122.9 287 34.8
CDE02G4447 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 6.1e-26 122.5 322 33.9
Ca_27679_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 3.0e-25 120.2 220 38.2
ClCG09G010170 Citrullus lanatus HOM05D005242 ORTHO05D006778 3.9e-25 119.8 225 37.8
Migut.N03213 Erythranthe guttata HOM05D005242 ORTHO05D006778 3.7e-23 113.2 150 45.3
Lsat_1_v5_gn_6_100581 Lactuca sativa HOM05D005242 ORTHO05D006778 3.7e-23 113.2 186 36.6
Lsat_1_v5_gn_9_40940 Lactuca sativa HOM05D005242 ORTHO05D006778 4.8e-23 112.8 151 43.0
BcaC03g15702 Brassica carinata HOM05D005242 ORTHO05D018625 1.1e-22 111.7 153 41.2
BcaB05g25009 Brassica carinata HOM05D005242 ORTHO05D006778 1.4e-22 111.3 145 46.2
unitig_52.g17530 Utricularia gibba HOM05D005242 ORTHO05D006778 1.8e-22 110.9 415 28.2
ATR0820G162 Amborella trichopoda HOM05D005242 ORTHO05D006778 4.1e-22 109.8 146 41.8
Nitab4.5_0004505g0020 Nicotiana tabacum HOM05D005242 ORTHO05D006778 5.3e-22 109.4 252 34.1
CDE08G0940 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 9.1e-22 108.6 307 31.6
HanXRQChr05g0161961 Helianthus annuus HOM05D005242 ORTHO05D006778 3.4e-21 106.7 159 37.1
GSVIVG01034537001 Vitis vinifera HOM05D005242 ORTHO05D006778 3.4e-21 106.7 326 30.1
TPR.G33911 Trifolium pratense HOM05D005786 ORTHO05D006946 7.7e-21 105.5 99 56.6
Sopen12g029170 Solanum pennellii HOM05D005242 ORTHO05D006778 3.2e-19 100.1 321 29.6
Sed0006497 Sechium edule HOM05D005242 ORTHO05D006778 1.6e-18 97.8 141 42.6
PGSC0003DMG402010796 Solanum tuberosum HOM05D005242 ORTHO05D006778 2.1e-18 97.4 321 28.7
Solyc12g056560.2 Solanum lycopersicum HOM05D005242 ORTHO05D006778 5.2e-17 92.8 321 28.3
BcaC03g15700 Brassica carinata HOM05D005242 ORTHO05D006778 5.7e-16 89.4 108 47.2
TWI60G1058 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 2.0e-13 80.9 225 32.9
Carub.0002s2369 Capsella rubella HOM05D005242 ORTHO05D018625 5.0e-12 76.3 86 52.3
Ca_10684_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 2.5e-11 73.9 95 48.4
Sp5g31920 Schrenkiella parvula HOM05D005242 ORTHO05D006778 2.1e-10 70.9 75 50.7
Phvul.004G094700 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 3.6e-10 70.1 231 29.4
Zm00001eb139380 Zea mays HOM05D005242 ORTHO05D006778 1.2e-08 65.1 98 30.6
Nn1g06075 Nelumbo nucifera HOM05D005242 ORTHO05D006778 2.6e-08 63.9 53 58.5
SEGI_03948 Sequoiadendron giganteum HOM05D005242 ORTHO05D000080 4.4e-08 63.2 95 37.9
SEGI_01966 Sequoiadendron giganteum HOM05D005242 ORTHO05D006778 7.5e-08 62.4 112 34.8
ECA246G4795 Erigeron canadensis HOM05D000028 ORTHO05D001176 2.2e-07 60.8 162 29.0
HPP92_004419 Vanilla planifolia HOM05D024549 ORTHO05D006778 6.3e-07 59.3 262 25.6
MBI09_g45000_MAGBIO Magnolia biondii HOM05D005242 ORTHO05D006778 5.3e-06 56.2 72 44.4


User provided reference genes

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