Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G1485 Cannabis sativa HOM05D001401 ORTHO05D006368 1.8e-149 532.7 296 100.0
RcHm_v2.0_Chr6g0262181 Rosa chinensis HOM05D001401 ORTHO05D006368 5.1e-88 328.6 297 59.3
FAN20G2914 Fragaria x ananassa HOM05D001401 ORTHO05D006368 4.3e-87 325.5 298 59.1
MD05G1071000 Malus domestica HOM05D001401 ORTHO05D006368 9.6e-87 324.3 305 60.7
Haze_02430 Corylus avellana HOM05D001401 ORTHO05D006368 8.1e-86 321.2 303 64.7
Prupe.8G107000 Prunus persica HOM05D001401 ORTHO05D006368 2.4e-85 319.7 309 63.4
CiPaw.05G060100 Carya illinoinensis HOM05D001401 ORTHO05D006368 6.9e-85 318.2 307 59.6
FAN24G0528 Fragaria x ananassa HOM05D001401 ORTHO05D006368 6.0e-81 305.1 296 63.5
FvH4_2g07780 Fragaria vesca HOM05D001401 ORTHO05D006368 4.3e-79 298.9 296 62.8
QL11p037824 Quercus lobata HOM05D001401 ORTHO05D006368 1.3e-78 297.4 345 52.5
MELO3C021952.2 Cucumis melo HOM05D001401 ORTHO05D002222 4.8e-78 295.4 305 54.8
Sed0001686 Sechium edule HOM05D001401 ORTHO05D006368 1.4e-77 293.9 304 53.9
Glyma.11G121600 Glycine max HOM05D001401 ORTHO05D006368 2.6e-76 289.7 313 55.0
Phvul.011G048500 Phaseolus vulgaris HOM05D001401 ORTHO05D006368 5.8e-76 288.5 311 52.7
Ciclev10028944m.g Citrus clementina HOM05D001401 ORTHO05D006368 2.9e-75 286.2 305 55.1
Manes.15G147100 Manihot esculenta HOM05D001401 ORTHO05D006368 2.9e-75 286.2 328 50.9
CsaV3_2G014470 Cucumis sativus L. HOM05D001401 ORTHO05D006368 3.2e-74 282.7 307 53.1
Glyma.12G046700 Glycine max HOM05D001401 ORTHO05D006368 7.1e-74 281.6 312 51.9
Sed0023769 Sechium edule HOM05D001401 ORTHO05D006368 9.3e-74 281.2 302 55.0
VMungo1127G1180 Vigna mungo HOM05D001401 ORTHO05D006368 3.5e-73 279.3 314 51.3
ClCG09G017860 Citrullus lanatus HOM05D001401 ORTHO05D006368 6.0e-73 278.5 307 57.0
Manes.17G098401 Manihot esculenta HOM05D001401 ORTHO05D006368 1.3e-72 277.3 325 53.2
Medtr4g068880 Medicago truncatula HOM05D001401 ORTHO05D006368 1.3e-72 277.3 307 55.0
TWI31G0569 Tripterygium wilfordii HOM05D001401 ORTHO05D002222 2.3e-72 276.6 307 55.4
arahy.Tifrunner.gnm1.ann1.U2ETAV Arachis hypogaea HOM05D001401 ORTHO05D006368 3.0e-72 276.2 310 50.0
Lj3g0025450 Lotus japonicus HOM05D001401 ORTHO05D006368 3.0e-72 276.2 312 52.2
TAR628G1386 Trochodendron aralioides HOM05D001401 ORTHO05D006368 1.6e-70 270.4 303 48.8
Cfa021516 Carpinus fangiana HOM05D001401 ORTHO05D006368 2.1e-70 270.0 215 65.1
TWI75G1696 Tripterygium wilfordii HOM05D001401 ORTHO05D006368 2.1e-70 270.0 306 54.6
Thecc.02G031200 Theobroma cacao HOM05D001401 ORTHO05D006368 6.2e-70 268.5 329 49.8
Psat7g205720 Pisum sativum HOM05D001401 ORTHO05D006368 1.1e-69 267.7 307 52.1
Sabra09G0084600 Salix brachista HOM05D001401 ORTHO05D006368 1.4e-69 267.3 316 50.3
Potri.009G111000 Populus trichocarpa HOM05D001401 ORTHO05D006368 1.8e-69 266.9 318 49.4
QL11p040047 Quercus lobata HOM05D001401 ORTHO05D006368 2.4e-69 266.5 214 63.6
TAR381G0019 Trochodendron aralioides HOM05D001401 ORTHO05D006368 2.4e-69 266.5 308 47.4
Potri.004G149900 Populus trichocarpa HOM05D001401 ORTHO05D006368 3.1e-69 266.2 319 48.9
Lalb_Chr01g0002831 Lupinus albus HOM05D001401 ORTHO05D006368 4.0e-69 265.8 313 50.5
Dinv42099 Davidia involucrata HOM05D001401 ORTHO05D006368 9.0e-69 264.6 307 56.7
vmacro02151 Vaccinium macrocarpon HOM05D001401 ORTHO05D006368 3.4e-68 262.7 305 49.5
Gohir.A01G181100 Gossypium hirsutum HOM05D001401 ORTHO05D006368 7.6e-68 261.5 310 48.7
Gorai.002G213800 Gossypium raimondii HOM05D001401 ORTHO05D006368 1.0e-67 261.2 310 48.7
Ca_20836_v3 Cicer arietinum L. HOM05D001401 ORTHO05D006368 1.7e-67 260.4 305 48.2
Gohir.D01G172200 Gossypium hirsutum HOM05D001401 ORTHO05D006368 6.5e-67 258.5 310 48.1
Duzib132G0928 Durio zibethinus HOM05D001401 ORTHO05D006368 1.4e-66 257.3 325 49.2
FAN15G1840 Fragaria x ananassa HOM05D001401 ORTHO05D006368 1.4e-66 257.3 207 63.3
Lalb_Chr03g0025871 Lupinus albus HOM05D001401 ORTHO05D006368 1.9e-66 256.9 302 51.0
TWI79G1069 Tripterygium wilfordii HOM05D001401 ORTHO05D002222 1.9e-66 256.9 314 51.3
Hma1.2p1_0584F.1_g183440 Hydrangea macrophylla HOM05D001401 ORTHO05D006368 2.5e-66 256.5 300 47.7
Atru.chr5.2919 Acer truncatum HOM05D001401 ORTHO05D006368 4.2e-66 255.8 307 53.7
Cfa021524 Carpinus fangiana HOM05D001401 ORTHO05D002222 1.2e-65 254.2 208 63.9
TPR.G28096 Trifolium pratense HOM05D001401 ORTHO05D006368 2.1e-65 253.4 306 53.9
Hund06213 Selenicereus undatus HOM05D001401 ORTHO05D006368 3.5e-65 252.7 301 48.2
ClCG02G005370 Citrullus lanatus HOM05D001401 ORTHO05D006368 1.0e-64 251.1 311 50.5
THA.LOC104807334 Tarenaya hassleriana HOM05D001401 ORTHO05D006368 6.7e-64 248.4 318 45.6
Actinidia27915 Actinidia chinensis HOM05D001401 ORTHO05D006368 8.7e-64 248.1 318 48.1
PSO700G0268 Papaver somniferum HOM05D001401 ORTHO05D006368 8.7e-64 248.1 299 47.8
CsaV3_7G010190 Cucumis sativus L. HOM05D001401 ORTHO05D006368 5.7e-63 245.4 308 49.4
Eucgr.I01238 Eucalyptus grandis HOM05D001401 ORTHO05D006368 3.7e-62 242.7 303 54.8
PSO170G2675 Papaver somniferum HOM05D001401 ORTHO05D006368 3.7e-62 242.7 299 46.8
Oeu034083.1 Olea europaea HOM05D001401 ORTHO05D006368 4.8e-62 242.3 302 48.3
Aqoxy6G00969 Aquilegia oxysepala HOM05D001401 ORTHO05D006368 1.1e-61 241.1 303 45.9
Actinidia00491 Actinidia chinensis HOM05D001401 ORTHO05D006368 1.4e-61 240.7 304 49.3
Nitab4.5_0003816g0020 Nicotiana tabacum HOM05D001401 ORTHO05D006368 2.4e-61 240.0 300 46.3
MELO3C018410.2 Cucumis melo HOM05D001401 ORTHO05D006368 3.1e-61 239.6 315 49.2
Cpa.g.sc62.97 Carica papaya HOM05D001401 ORTHO05D006368 4.1e-61 239.2 325 47.1
Cc02_g18020 Coffea canephora HOM05D001401 ORTHO05D006368 4.1e-61 239.2 303 49.2
Sabra04G0099700 Salix brachista HOM05D001401 ORTHO05D006368 9.0e-61 238.0 363 43.0
Duzib248G1632 Durio zibethinus HOM05D001401 ORTHO05D006368 1.2e-60 237.7 341 43.1
CSS0017552 Camellia sinensis var. sinensis HOM05D001401 ORTHO05D006368 2.0e-60 236.9 306 51.6
Dinv23564 Davidia involucrata HOM05D001401 ORTHO05D006368 2.0e-60 236.9 303 52.1
Nn5g29458 Nelumbo nucifera HOM05D001401 ORTHO05D006368 2.0e-60 236.9 306 47.4
Aa31LG8G13520 Aethionema arabicum HOM05D001401 ORTHO05D006368 7.6e-60 235.0 299 45.8
DCAR_029001 Daucus carota HOM05D001401 ORTHO05D006368 1.7e-59 233.8 300 46.0
AUR62011378 Chenopodium quinoa HOM05D001401 ORTHO05D006368 2.9e-59 233.0 299 44.5
Rhsim11G0172600 Rhododendron simsii HOM05D000554 ORTHO05D002829 6.5e-59 231.9 347 42.9
SalBow6G2648 Salvia bowleyana HOM05D001401 ORTHO05D006368 6.5e-59 231.9 296 48.6
Sp3g29340 Schrenkiella parvula HOM05D001401 ORTHO05D006368 1.9e-58 230.3 312 45.2
AUR62016681 Chenopodium quinoa HOM05D001401 ORTHO05D006368 2.5e-58 229.9 304 43.8
Lsat_1_v5_gn_5_118161 Lactuca sativa HOM05D001401 ORTHO05D006368 3.2e-58 229.6 299 48.5
Hund00301 Selenicereus undatus HOM05D001401 ORTHO05D006368 7.2e-58 228.4 301 42.5
Nitab4.5_0004280g0010 Nicotiana tabacum HOM05D001401 ORTHO05D006368 9.3e-58 228.0 311 44.7
PGR042G1488 Punica granatum HOM05D001401 ORTHO05D006368 1.2e-57 227.6 299 49.2
Medtr0026s0200 Medicago truncatula HOM05D001401 ORTHO05D006368 3.6e-57 226.1 221 53.8
A07p04770 Brassica napus HOM05D001401 ORTHO05D006368 6.1e-57 225.3 303 46.2
BraA07t28264Z Brassica rapa HOM05D001401 ORTHO05D006368 6.1e-57 225.3 303 46.2
Carub.0003s2988 Capsella rubella HOM05D001401 ORTHO05D006368 6.1e-57 225.3 322 43.2
Sc08g0000270 Simmondsia chinensis HOM05D001401 ORTHO05D006368 6.1e-57 225.3 301 43.2
COL.COLO4_17797 Corchorus olitorius HOM05D000370 ORTHO05D001335 1.0e-56 224.6 258 48.1
AT2G16070 Arabidopsis thaliana HOM05D001401 ORTHO05D006368 2.3e-56 223.4 306 43.5
PSO541G5534 Papaver somniferum HOM05D001401 ORTHO05D006368 2.3e-56 223.4 304 43.4
Sed0001319 Sechium edule HOM05D001401 ORTHO05D006368 3.9e-56 222.6 303 45.5
BcaC01g03041 Brassica carinata HOM05D001401 ORTHO05D006368 6.7e-56 221.9 319 43.6
C03p56790 Brassica napus HOM05D001401 ORTHO05D006368 6.7e-56 221.9 319 43.6
BolC3t17961H Brassica oleracea HOM05D001401 ORTHO05D006368 6.7e-56 221.9 319 43.6
ECA234G2696 Erigeron canadensis HOM05D000324 ORTHO05D001014 8.7e-56 221.5 293 48.8
CARHR106370 Cardamine hirsuta HOM05D001401 ORTHO05D006368 1.5e-55 220.7 313 43.5
C07p07640 Brassica napus HOM05D001401 ORTHO05D006368 1.9e-55 220.3 302 47.7
BolC7t41185H Brassica oleracea HOM05D001401 ORTHO05D006368 1.9e-55 220.3 302 47.7
PSO675G0936 Papaver somniferum HOM05D001401 ORTHO05D006368 1.9e-55 220.3 304 42.8
BraA03t13701Z Brassica rapa HOM05D001401 ORTHO05D006368 4.3e-55 219.2 298 46.0
Thhalv10022794m.g Eutrema salsugineum HOM05D001401 ORTHO05D006368 4.3e-55 219.2 313 46.6
Peaxi162Scf00016g01140 Petunia axillaris HOM05D001401 ORTHO05D006368 1.3e-54 217.6 299 42.1
BcaB08g34633 Brassica carinata HOM05D001401 ORTHO05D006368 4.8e-54 215.7 319 45.8
MSTRG.5386 Avicennia marina HOM05D001401 ORTHO05D006368 1.4e-53 214.2 305 45.9
A03p45690 Brassica napus HOM05D001401 ORTHO05D006368 1.8e-53 213.8 300 46.7
Hund00294 Selenicereus undatus HOM05D001401 ORTHO05D006368 1.8e-53 213.8 293 41.6
Lj9P365T45 Lonicera japonica HOM05D001401 ORTHO05D006368 4.1e-53 212.6 209 56.0
Sopen01g051420 Solanum pennellii HOM05D001401 ORTHO05D006368 6.9e-53 211.8 300 43.3
MSTRG.20113 Avicennia marina HOM05D001401 ORTHO05D006368 1.2e-52 211.1 309 43.7
Migut.N01216 Erythranthe guttata HOM05D001401 ORTHO05D006368 1.2e-52 211.1 300 43.7
Solyc01g109260.3 Solanum lycopersicum HOM05D001401 ORTHO05D006368 1.2e-52 211.1 300 43.7
PGSC0003DMG400025176 Solanum tuberosum HOM05D001401 ORTHO05D006368 1.2e-52 211.1 300 44.0
Ah.01g006390 Amaranthus hybridus HOM05D001401 ORTHO05D006368 2.6e-52 209.9 299 42.5
ATR0733G254 Amborella trichopoda HOM05D001401 ORTHO05D006368 5.9e-52 208.8 324 41.7
CAN.G322.101 Capsicum annuum HOM05D001401 ORTHO05D006368 3.8e-51 206.1 301 42.5
HanXRQChr10g0307141 Helianthus annuus HOM05D001401 ORTHO05D006368 3.8e-51 206.1 299 45.2
BcaC06g36113 Brassica carinata HOM05D001401 ORTHO05D006368 8.5e-51 204.9 304 45.7
MBI16_g36202_MAGBIO Magnolia biondii HOM05D001401 ORTHO05D002222 2.5e-50 203.4 277 45.5
THA.LOC104820173 Tarenaya hassleriana HOM05D001401 ORTHO05D006368 9.7e-47 191.4 315 40.3
A09p10890 Brassica napus HOM05D001401 ORTHO05D006368 1.7e-46 190.7 312 42.0
Migut.B00279 Erythranthe guttata HOM05D001401 ORTHO05D006368 5.3e-45 185.7 306 40.8
Oeu027593.1 Olea europaea HOM05D001574 ORTHO05D006368 7.7e-44 181.8 272 41.2
CDE01G0160 Ceratophyllum demersum HOM05D001401 ORTHO05D006368 6.5e-43 178.7 305 41.0
SGA_v2.0_scaffold58G20583 Striga asiatica HOM05D001401 ORTHO05D006368 2.5e-42 176.8 297 41.4
EL10Ac9g21774 Beta vulgaris HOM05D001401 ORTHO05D002222 1.6e-41 174.1 267 49.1
Ah.01g019700 Amaranthus hybridus HOM05D001401 ORTHO05D002222 2.2e-38 163.7 201 45.3
Os07g0123300 Oryza sativa ssp. japonica HOM05D001401 ORTHO05D006368 7.0e-37 158.7 253 36.0
CDE04G2456 Ceratophyllum demersum HOM05D001401 ORTHO05D006368 6.5e-35 152.1 300 38.7
SEGI_00142 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 8.0e-33 145.2 319 35.7
Zm00001eb299190 Zea mays HOM05D001401 ORTHO05D006368 1.4e-32 144.4 323 34.4
Nn1g05138 Nelumbo nucifera HOM05D001401 ORTHO05D006368 2.6e-31 140.2 161 51.6
GSVIVG01031902001 Vitis vinifera HOM05D001401 ORTHO05D006368 4.4e-31 139.4 167 53.9
C09p12860 Brassica napus HOM05D001401 ORTHO05D006368 2.7e-28 130.2 308 35.1
BolC9t54175H Brassica oleracea HOM05D001401 ORTHO05D006368 2.7e-28 130.2 308 35.1
BcaNung01772 Brassica carinata HOM05D001401 ORTHO05D006368 1.5e-26 124.4 189 47.1
BraA09t36729Z Brassica rapa HOM05D001401 ORTHO05D006368 4.7e-25 119.4 161 46.6
Mapoly0001s0328 Marchantia polymorpha HOM05D001401 ORTHO05D006368 4.8e-22 109.4 362 29.3
TAR623G1717 Trochodendron aralioides HOM05D001401 ORTHO05D006368 1.4e-21 107.8 91 59.3
Pp3c22_17090 Physcomitrium patens HOM05D001401 ORTHO05D006368 4.1e-21 106.3 381 27.3
Pp3c1_32220 Physcomitrium patens HOM05D001401 ORTHO05D006368 7.0e-21 105.5 350 30.3
Pp3c2_5300 Physcomitrium patens HOM05D001401 ORTHO05D006368 3.5e-20 103.2 362 29.0
BcaB07g31630 Brassica carinata HOM05D006912 ORTHO05D008686 7.7e-20 102.1 151 40.4
Pp3c17_18860 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.0e-19 101.7 358 28.8
Lj1C312T0 Lonicera japonica HOM05D001401 ORTHO05D006368 1.7e-19 100.9 122 48.4
SEGI_14403 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 3.8e-19 99.8 341 29.0
AagrBONN_evm.TU.Sc2ySwM_228.2503 Anthoceros agrestis HOM05D001401 ORTHO05D006368 4.0e-16 89.7 346 27.2
Pp3c19_14090 Physcomitrium patens HOM05D001401 ORTHO05D006368 4.9e-14 82.8 380 25.8
CDE02G3784 Ceratophyllum demersum HOM05D001401 ORTHO05D002222 4.1e-13 79.7 118 39.0
unitig_21.g20770 Utricularia gibba HOM05D000370 ORTHO05D001335 4.1e-13 79.7 261 31.0
FAN15G3283 Fragaria x ananassa HOM05D001401 ORTHO05D006368 1.7e-11 74.3 77 54.5
SalBow1G1061 Salvia bowleyana HOM05D001999 ORTHO05D001994 8.0e-09 65.5 54 68.5
SEGI_34742 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 5.2e-08 62.8 234 25.2
BcaC04g23035 Brassica carinata HOM05D001401 ORTHO05D006368 1.5e-07 61.2 84 41.7
FAN15G1877 Fragaria x ananassa HOM05D001401 ORTHO05D006368 1.5e-07 61.2 40 75.0
SEGI_17958 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 2.0e-07 60.8 238 23.5
Pp3c18_7150 Physcomitrium patens HOM05D001401 ORTHO05D006368 4.4e-07 59.7 147 30.6
QL11p040051 Quercus lobata HOM05D001401 ORTHO05D006368 4.4e-07 59.7 77 59.7


User provided reference genes

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