Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G1471 Cannabis sativa HOM05D003722 ORTHO05D004589 0.0e+00 1348.6 1030 100.0
Prupe.1G404200 Prunus persica HOM05D003722 ORTHO05D004589 3.9e-260 902.1 1036 66.0
MD15G1049900 Malus domestica HOM05D003722 ORTHO05D004589 1.2e-258 897.1 1025 68.1
MD08G1071300 Malus domestica HOM05D003722 ORTHO05D004589 4.6e-245 852.0 1031 67.8
FAN27G2597 Fragaria x ananassa HOM05D003722 ORTHO05D004589 7.3e-243 844.7 1045 61.1
RcHm_v2.0_Chr6g0311801 Rosa chinensis HOM05D003722 ORTHO05D004589 1.3e-242 844.0 1032 62.6
Haze_18293 Corylus avellana HOM05D003722 ORTHO05D004589 2.8e-242 842.8 1052 66.3
FvH4_2g30970 Fragaria vesca HOM05D003722 ORTHO05D004589 3.1e-241 839.3 1044 67.4
FAN24G1820 Fragaria x ananassa HOM05D003722 ORTHO05D004589 4.0e-241 839.0 1044 67.4
FAN20G0071 Fragaria x ananassa HOM05D003722 ORTHO05D004589 5.1e-236 822.0 1034 67.0
COL.COLO4_21138 Corchorus olitorius HOM05D003722 ORTHO05D004589 2.1e-234 816.6 1041 70.0
Manes.16G085600 Manihot esculenta HOM05D003722 ORTHO05D004589 1.8e-233 813.5 1049 66.6
Potri.018G048700 Populus trichocarpa HOM05D003722 ORTHO05D004589 1.8e-233 813.5 1048 62.1
QL02p017002 Quercus lobata HOM05D003722 ORTHO05D004589 6.9e-233 811.6 1050 67.3
Thecc.09G063300 Theobroma cacao HOM05D003722 ORTHO05D004589 3.4e-232 809.3 1044 70.2
Potri.006G220900 Populus trichocarpa HOM05D003722 ORTHO05D004589 1.1e-230 804.3 1053 65.7
Gohir.A07G019700 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.0e-228 797.7 964 72.4
Manes.03G053433 Manihot esculenta HOM05D003722 ORTHO05D004589 1.0e-228 797.7 1046 64.4
Duzib187G0791 Durio zibethinus HOM05D003722 ORTHO05D004589 8.7e-228 794.7 961 73.2
Gorai.001G020200 Gossypium raimondii HOM05D003722 ORTHO05D004589 1.1e-225 787.7 888 76.0
Gohir.D07G019500 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.5e-224 783.9 891 74.9
Sabra18G0046400 Salix brachista HOM05D003722 ORTHO05D004589 3.2e-222 776.2 1007 61.8
Ciclev10007327m.g Citrus clementina HOM05D003722 ORTHO05D004589 1.2e-221 774.2 1038 68.0
TWI34G0168 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 2.7e-221 773.1 888 74.4
GSVIVG01035469001 Vitis vinifera HOM05D003722 ORTHO05D004589 2.7e-221 773.1 889 68.7
TAR624G1180 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.0e-220 771.2 892 72.3
CiPaw.15G091900 Carya illinoinensis HOM05D003722 ORTHO05D004589 1.9e-219 766.9 1028 60.2
Eucgr.C03158 Eucalyptus grandis HOM05D003722 ORTHO05D004589 9.6e-219 764.6 891 73.3
Sabra06G0170700 Salix brachista HOM05D003722 ORTHO05D004589 1.3e-218 764.2 956 65.8
TWI32G0253 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 1.4e-217 760.8 892 69.7
TAR636G3697 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.3e-215 754.2 893 65.8
arahy.Tifrunner.gnm1.ann1.JX1TK4 Arachis hypogaea HOM05D003722 ORTHO05D004589 3.8e-215 752.7 888 72.1
CsaV3_4G036040 Cucumis sativus L. HOM05D003722 ORTHO05D004589 1.4e-214 750.7 1012 64.7
Duzib168G1968 Durio zibethinus HOM05D003722 ORTHO05D004589 5.5e-214 748.8 1052 62.9
Dinv02138 Davidia involucrata HOM05D003722 ORTHO05D004589 1.0e-212 744.6 934 64.8
ClCG05G015740 Citrullus lanatus HOM05D003722 ORTHO05D004589 6.9e-209 731.9 1044 62.9
VMungo0647G1341 Vigna mungo HOM05D003722 ORTHO05D004589 7.7e-208 728.4 888 70.4
Glyma.14G098900 Glycine max HOM05D003722 ORTHO05D004589 6.5e-207 725.3 895 71.2
Phvul.009G081900 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 3.2e-206 723.0 890 70.3
Aqoxy7G04082 Aquilegia oxysepala HOM05D003722 ORTHO05D004589 6.1e-205 718.8 886 70.7
Lj5g0007526 Lotus japonicus HOM05D003722 ORTHO05D004589 6.1e-205 718.8 899 71.5
Dinv41842 Davidia involucrata HOM05D003722 ORTHO05D004589 7.9e-205 718.4 892 71.1
PGR044G0665 Punica granatum HOM05D003722 ORTHO05D004589 3.9e-204 716.1 885 71.9
Sc23g0004200 Simmondsia chinensis HOM05D003722 ORTHO05D004589 6.7e-204 715.3 884 69.5
Lalb_Chr22g0356231 Lupinus albus HOM05D003722 ORTHO05D004589 2.6e-203 713.4 887 70.9
DCAR_004379 Daucus carota HOM05D003722 ORTHO05D004589 3.7e-202 709.5 888 72.6
arahy.Tifrunner.gnm1.ann1.G8USHK Arachis hypogaea HOM05D003722 ORTHO05D004589 1.4e-201 707.6 877 70.6
TAR626G0360 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.7e-199 700.7 889 70.2
TAR626G0824 Trochodendron aralioides HOM05D003722 ORTHO05D004589 3.8e-199 699.5 889 70.3
Hma1.2p1_0836F.1_g225970 Hydrangea macrophylla HOM05D003722 ORTHO05D004589 6.5e-199 698.7 1032 63.4
Medtr1g015450 Medicago truncatula HOM05D003722 ORTHO05D004589 3.2e-198 696.4 894 68.7
Nn8g38669 Nelumbo nucifera HOM05D003722 ORTHO05D004589 4.2e-198 696.0 895 71.7
Phvul.001G038700 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 9.4e-198 694.9 887 68.4
Nitab4.5_0000446g0200 Nicotiana tabacum HOM05D003722 ORTHO05D004589 1.6e-197 694.1 827 67.4
Nn6g35614 Nelumbo nucifera HOM05D003722 ORTHO05D004589 4.7e-197 692.6 892 69.1
Glyma.17G225800 Glycine max HOM05D003722 ORTHO05D004589 7.9e-197 691.8 832 73.7
CSS0013734 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 5.2e-196 689.1 892 68.6
AT4G33210 Arabidopsis thaliana HOM05D003722 ORTHO05D004589 1.5e-195 687.6 885 69.4
Gohir.D06G083100 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.5e-195 687.6 935 67.1
Glyma.06G055800 Glycine max HOM05D003722 ORTHO05D004589 3.3e-195 686.4 889 66.9
TPR.G38933 Trifolium pratense HOM05D003722 ORTHO05D004589 3.3e-195 686.4 924 65.8
MBI19_g11832_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 4.4e-195 686.0 894 68.3
Sed0027838 Sechium edule HOM05D003722 ORTHO05D004589 2.8e-194 683.3 869 70.0
Atru.chr7.1848 Acer truncatum HOM05D003722 ORTHO05D004589 2.0e-192 677.2 774 73.5
Migut.E01781 Erythranthe guttata HOM05D003722 ORTHO05D004589 3.5e-192 676.4 846 71.4
BraA03t15228Z Brassica rapa HOM05D003722 ORTHO05D004589 1.7e-191 674.1 887 68.5
DCAR_001223 Daucus carota HOM05D003722 ORTHO05D004589 2.2e-191 673.7 889 69.2
Ca_13110_v3 Cicer arietinum L. HOM05D003722 ORTHO05D004589 2.9e-191 673.3 897 67.3
HanXRQChr09g0261801 Helianthus annuus HOM05D003722 ORTHO05D004589 5.0e-191 672.5 883 59.6
Lalb_Chr23g0267971 Lupinus albus HOM05D003722 ORTHO05D004589 8.5e-191 671.8 891 61.7
Rhsim03G0063100 Rhododendron simsii HOM05D003722 ORTHO05D004589 1.6e-189 667.5 894 67.4
CARHR241240 Cardamine hirsuta HOM05D003722 ORTHO05D004589 1.0e-188 664.8 887 70.1
EL10Ac2g03782 Beta vulgaris HOM05D003722 ORTHO05D004589 1.4e-188 664.5 883 64.0
PSO724G0454 Papaver somniferum HOM05D003722 ORTHO05D004589 4.0e-188 662.9 887 66.3
VMungo1309G1038 Vigna mungo HOM05D003722 ORTHO05D004589 6.7e-188 662.1 866 68.5
Carub.0007s0725 Capsella rubella HOM05D003722 ORTHO05D004589 8.8e-188 661.8 885 68.2
ATR0598G202 Amborella trichopoda HOM05D003722 ORTHO05D004589 1.5e-187 661.0 874 66.5
Glyma.04G055700 Glycine max HOM05D003722 ORTHO05D004589 4.4e-187 659.4 890 66.3
Sed0000287 Sechium edule HOM05D003722 ORTHO05D004589 4.4e-187 659.4 807 66.5
PSO135G0299 Papaver somniferum HOM05D003722 ORTHO05D004589 2.2e-186 657.1 887 65.7
Peaxi162Scf00486g01029 Petunia axillaris HOM05D003722 ORTHO05D004589 2.8e-186 656.8 836 66.3
Thhalv10024312m.g Eutrema salsugineum HOM05D003722 ORTHO05D004589 1.1e-185 654.8 883 69.2
Lsat_1_v5_gn_8_70661 Lactuca sativa HOM05D003722 ORTHO05D004589 1.1e-185 654.8 1026 58.4
CSS0048906 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 1.4e-185 654.4 819 70.6
AL7G18350 Arabidopsis lyrata HOM05D003722 ORTHO05D004589 3.1e-185 653.3 885 69.3
THA.LOC104803705 Tarenaya hassleriana HOM05D003722 ORTHO05D004589 5.3e-185 652.5 889 64.3
Solyc08g061820.3 Solanum lycopersicum HOM05D003722 ORTHO05D004589 7.0e-185 652.1 826 66.2
Nitab4.5_0002831g0060 Nicotiana tabacum HOM05D003722 ORTHO05D004589 9.1e-185 651.7 890 63.8
Sp7g30950 Schrenkiella parvula HOM05D003722 ORTHO05D004589 2.7e-184 650.2 885 66.8
vmacro07490 Vaccinium macrocarpon HOM05D003722 ORTHO05D004589 5.9e-184 649.0 799 69.1
A01p04970 Brassica napus HOM05D003722 ORTHO05D004589 7.7e-184 648.7 885 68.5
Sopen08g017250 Solanum pennellii HOM05D003722 ORTHO05D004589 7.7e-184 648.7 826 66.1
BraA01t00479Z Brassica rapa HOM05D003722 ORTHO05D004589 1.0e-183 648.3 885 68.4
AUR62009080 Chenopodium quinoa HOM05D003722 ORTHO05D004589 1.0e-183 648.3 906 63.9
PGSC0003DMG400018806 Solanum tuberosum HOM05D003722 ORTHO05D004589 1.0e-183 648.3 828 67.9
BcaNung02160 Brassica carinata HOM05D003722 ORTHO05D004589 2.9e-183 646.7 887 67.4
Lj7A221G29 Lonicera japonica HOM05D003722 ORTHO05D004589 1.1e-182 644.8 799 66.1
C01p05420 Brassica napus HOM05D003722 ORTHO05D004589 2.5e-182 643.7 887 68.4
Oeu036060.1 Olea europaea HOM05D003722 ORTHO05D004589 2.5e-182 643.7 842 66.5
BolC1t00522H Brassica oleracea HOM05D003722 ORTHO05D004589 5.5e-182 642.5 892 68.0
MSTRG.25985 Avicennia marina HOM05D003722 ORTHO05D004589 9.4e-182 641.7 842 68.4
Lalb_Chr08g0244821 Lupinus albus HOM05D003722 ORTHO05D004589 2.1e-181 640.6 891 64.5
BolC7t46400H Brassica oleracea HOM05D003722 ORTHO05D004589 2.7e-181 640.2 883 67.4
BcaC09g52132 Brassica carinata HOM05D003722 ORTHO05D004589 1.0e-180 638.3 886 67.9
CiPaw.16G068500 Carya illinoinensis HOM05D003722 ORTHO05D004589 1.2e-179 634.8 866 64.5
AUR62020586 Chenopodium quinoa HOM05D003722 ORTHO05D004589 2.2e-178 630.6 882 66.1
MELO3C016912.2 Cucumis melo HOM05D003722 ORTHO05D004589 2.8e-178 630.2 1005 51.1
ECA236G0039 Erigeron canadensis HOM05D003722 ORTHO05D004589 7.0e-177 625.5 849 67.3
Aa31sc290G30 Aethionema arabicum HOM05D003722 ORTHO05D004589 2.0e-176 624.0 1032 58.9
Migut.A00079 Erythranthe guttata HOM05D003722 ORTHO05D004589 1.0e-175 621.7 887 66.4
Gorai.010G096600 Gossypium raimondii HOM05D003722 ORTHO05D004589 1.3e-175 621.3 807 63.7
Actinidia27552 Actinidia chinensis HOM05D003722 ORTHO05D004589 4.7e-173 612.8 891 63.2
arahy.Tifrunner.gnm1.ann1.V7LPDI Arachis hypogaea HOM05D003722 ORTHO05D004589 2.3e-172 610.5 864 65.4
arahy.Tifrunner.gnm1.ann1.V9GZ7C Arachis hypogaea HOM05D003722 ORTHO05D004589 2.3e-172 610.5 864 67.7
HanXRQChr05g0135941 Helianthus annuus HOM05D003722 ORTHO05D004589 1.2e-171 608.2 830 61.3
CAN.G881.1 Capsicum annuum HOM05D003722 ORTHO05D004589 2.0e-171 607.4 792 66.7
SGA_v2.0_scaffold163G37999 Striga asiatica HOM05D003722 ORTHO05D004589 2.0e-171 607.4 824 68.4
SGA_v2.0_scaffold64G21877 Striga asiatica HOM05D003722 ORTHO05D004589 2.2e-170 604.0 808 69.9
SalBow4G2891 Salvia bowleyana HOM05D003722 ORTHO05D004589 5.9e-168 595.9 794 68.8
HanXRQChr03g0065591 Helianthus annuus HOM05D003722 ORTHO05D004589 8.6e-167 592.0 807 68.2
Hund19422 Selenicereus undatus HOM05D003722 ORTHO05D004589 7.5e-163 578.9 806 62.7
C03p86790 Brassica napus HOM05D003722 ORTHO05D004589 1.2e-160 571.6 883 57.8
Medtr1g015480 Medicago truncatula HOM05D003722 ORTHO05D004589 7.8e-160 568.9 785 64.7
BcaC01g01002 Brassica carinata HOM05D003722 ORTHO05D004589 1.3e-159 568.2 883 56.9
BolC3t20973H Brassica oleracea HOM05D003722 ORTHO05D004589 1.3e-159 568.2 883 56.9
BraA08t33724Z Brassica rapa HOM05D003722 ORTHO05D004589 4.3e-158 563.1 884 57.7
SGA_v2.0_scaffold169G38713 Striga asiatica HOM05D003722 ORTHO05D004589 5.2e-156 556.2 818 63.9
A08p17750 Brassica napus HOM05D003722 ORTHO05D004589 1.6e-152 544.7 887 57.7
BraA08t33725Z Brassica rapa HOM05D003722 ORTHO05D004589 5.0e-151 539.7 887 57.8
SEGI_30451 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 6.6e-151 539.3 902 59.1
C03p86800 Brassica napus HOM05D003722 ORTHO05D004589 3.3e-150 537.0 890 57.9
BolC3t20974H Brassica oleracea HOM05D003722 ORTHO05D004589 2.8e-149 533.9 890 56.1
BcaB03g12811 Brassica carinata HOM05D003722 ORTHO05D004589 3.6e-149 533.5 802 60.0
unitig_748.g8237 Utricularia gibba HOM05D003722 ORTHO05D004589 1.1e-148 531.9 810 66.9
Psat6g022880 Pisum sativum HOM05D003722 ORTHO05D004589 1.4e-148 531.6 887 54.9
HPP92_006154 Vanilla planifolia HOM05D003722 ORTHO05D004589 4.0e-148 530.0 834 62.7
Gohir.A06G081600 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.3e-143 515.0 693 70.1
A08p17740 Brassica napus HOM05D003722 ORTHO05D004589 1.8e-140 504.6 883 55.2
SEGI_01273 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 2.6e-139 500.7 868 59.6
TWI39G1239 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 1.7e-135 488.0 741 60.5
Cpa.g.sc126.25 Carica papaya HOM05D003722 ORTHO05D004589 2.1e-133 481.1 689 73.0
unitig_4.g30332 Utricularia gibba HOM05D003722 ORTHO05D004589 3.5e-128 463.8 792 50.5
Mapoly0202s0013 Marchantia polymorpha HOM05D003722 ORTHO05D004589 4.5e-123 446.8 918 50.3
CDE07G1686 Ceratophyllum demersum HOM05D003722 ORTHO05D004589 3.5e-120 437.2 728 57.1
Pp3c5_23900 Physcomitrium patens HOM05D003722 ORTHO05D004589 1.3e-119 435.3 918 48.7
SMO238G0031 Selaginella moellendorffii HOM05D003722 ORTHO05D004589 4.0e-116 423.7 795 52.6
Pp3c12_17410 Physcomitrium patens HOM05D003722 ORTHO05D004589 3.4e-115 420.6 926 45.7
MBI13_g31962_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 4.9e-114 416.8 674 56.2
Pp3c4_12360 Physcomitrium patens HOM05D003722 ORTHO05D004589 6.0e-112 409.8 844 55.5
Oeu022303.1 Olea europaea HOM05D003722 ORTHO05D004589 5.9e-99 366.7 900 34.9
Pp3c6_6070 Physcomitrium patens HOM05D003722 ORTHO05D004589 9.4e-97 359.4 998 42.5
Actinidia25690 Actinidia chinensis HOM05D003722 ORTHO05D004589 6.7e-95 353.2 651 65.6
SalBow1G2799 Salvia bowleyana HOM05D003722 ORTHO05D004589 1.9e-94 351.7 622 74.0
MBI13_g13882_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 2.4e-92 344.7 397 59.4
Sc09g0010110 Simmondsia chinensis HOM05D003722 ORTHO05D004589 4.7e-88 330.5 741 49.4
Zm00001eb048660 Zea mays HOM05D003722 ORTHO05D004589 7.9e-88 329.7 471 48.4
CBR_g11995 Chara braunii HOM05D003722 ORTHO05D004589 1.0e-87 329.3 931 45.6
Cc08_g01170 Coffea canephora HOM05D003722 ORTHO05D004589 5.3e-84 317.0 518 57.9
AagrBONN_evm.TU.Sc2ySwM_117.2463 Anthoceros agrestis HOM05D003722 ORTHO05D004589 1.5e-83 315.5 616 61.0
SHI18847 Sapria himalayana HOM05D000105 ORTHO05D000023 9.4e-81 306.2 422 52.4
Os10g0396400 Oryza sativa ssp. japonica HOM05D003722 ORTHO05D004589 3.1e-76 291.2 618 56.5
Zm00001eb223490 Zea mays HOM05D003722 ORTHO05D004589 1.1e-73 282.7 435 46.4
Cc08_g01160 Coffea canephora HOM05D003722 ORTHO05D004589 2.5e-65 255.0 270 65.2
Psat3g079480 Pisum sativum HOM05D003722 ORTHO05D004589 6.8e-55 220.3 202 62.4
Gohir.A06G081780 Gossypium hirsutum HOM05D003722 ORTHO05D004589 8.9e-55 219.9 247 51.0
Oeu028128.1 Olea europaea HOM05D003722 ORTHO05D004589 7.8e-51 206.8 311 70.7
Ah.11g044300 Amaranthus hybridus HOM05D003722 ORTHO05D004589 1.4e-47 196.1 224 50.9
Actinidia25691 Actinidia chinensis HOM05D003722 ORTHO05D004589 8.6e-42 176.8 213 48.8
Cpa.g.sc126.26 Carica papaya HOM05D003722 ORTHO05D004589 2.8e-40 171.8 124 69.4
VMungo0720G2633 Vigna mungo HOM05D003722 ORTHO05D004589 2.2e-29 135.6 88 76.1
Psat5g213240 Pisum sativum HOM05D003722 ORTHO05D004589 2.4e-28 132.1 75 85.3
VMungo0251G0605 Vigna mungo HOM05D003722 ORTHO05D001926 5.1e-26 124.4 126 55.6
ECA236G4568 Erigeron canadensis HOM05D000007 ORTHO05D000039 1.7e-18 99.4 167 43.1
SalBow1G8614 Salvia bowleyana HOM05D003722 ORTHO05D050768 3.4e-14 85.1 266 74.1
Psat5g114640 Pisum sativum HOM05D003722 ORTHO05D004589 2.9e-13 82.0 187 34.2
Mapoly0101s0054 Marchantia polymorpha HOM05D003722 ORTHO05D004589 7.1e-12 77.4 62 58.1


User provided reference genes

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