Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G1462 Cannabis sativa HOM05D007211 ORTHO05D009060 2.2e-41 171.8 83 100.0
CANSAT25G3598 Cannabis sativa HOM05D007211 ORTHO05D009060 2.2e-41 171.8 83 100.0
Haze_10197 Corylus avellana HOM05D007211 ORTHO05D009060 2.0e-34 148.7 83 84.3
ClCG05G010330 Citrullus lanatus HOM05D007211 ORTHO05D009060 1.3e-33 146.0 83 79.5
CiPaw.06G168700 Carya illinoinensis HOM05D007211 ORTHO05D009060 2.2e-33 145.2 81 81.5
QL11p032854 Quercus lobata HOM05D007211 ORTHO05D009060 2.9e-33 144.8 81 82.7
MELO3C019551.2 Cucumis melo HOM05D007211 ORTHO05D009060 5.0e-33 144.1 83 79.5
PGR142G3039 Punica granatum HOM05D007211 ORTHO05D009060 1.4e-32 142.5 83 78.3
COL.COLO4_32576 Corchorus olitorius HOM05D007211 ORTHO05D009060 1.9e-32 142.1 82 79.3
Eucgr.I01095 Eucalyptus grandis HOM05D007211 ORTHO05D009060 7.2e-32 140.2 80 80.0
Gohir.A13G044300 Gossypium hirsutum HOM05D007211 ORTHO05D009060 7.2e-32 140.2 82 76.8
CsaV3_3G018160 Cucumis sativus L. HOM05D007211 ORTHO05D009060 9.4e-32 139.8 83 77.1
Thecc.02G110400 Theobroma cacao HOM05D007211 ORTHO05D009060 2.7e-31 138.3 80 78.8
Cpa.g.sc106.108 Carica papaya HOM05D007211 ORTHO05D009060 3.6e-31 137.9 83 75.9
Nn1g04662 Nelumbo nucifera HOM05D007211 ORTHO05D009060 3.6e-31 137.9 80 78.8
Potri.001G299200 Populus trichocarpa HOM05D007211 ORTHO05D009060 4.7e-31 137.5 80 78.8
Gorai.013G048100 Gossypium raimondii HOM05D007211 ORTHO05D009060 7.9e-31 136.7 80 77.5
Gohir.D13G043400 Gossypium hirsutum HOM05D007211 ORTHO05D009060 1.0e-30 136.3 80 77.5
Ciclev10029710m.g Citrus clementina HOM05D007211 ORTHO05D009060 1.8e-30 135.6 80 75.0
Manes.10G075811 Manihot esculenta HOM05D007211 ORTHO05D009060 2.3e-30 135.2 80 77.5
Manes.10G076037 Manihot esculenta HOM05D007211 ORTHO05D009060 2.3e-30 135.2 80 77.5
Duzib248G0207 Durio zibethinus HOM05D007211 ORTHO05D009060 3.0e-30 134.8 82 73.2
Prupe.8G136900 Prunus persica HOM05D007211 ORTHO05D009060 3.0e-30 134.8 80 76.2
Sed0014592 Sechium edule HOM05D007211 ORTHO05D009060 3.9e-30 134.4 83 71.1
Atru.chr5.2471 Acer truncatum HOM05D007211 ORTHO05D009060 8.8e-30 133.3 80 75.0
TWI31G1006 Tripterygium wilfordii HOM05D007211 ORTHO05D009060 1.5e-29 132.5 80 72.5
TWI79G1551 Tripterygium wilfordii HOM05D007211 ORTHO05D009060 1.5e-29 132.5 80 71.2
MD04G1005100 Malus domestica HOM05D007211 ORTHO05D009060 2.6e-29 131.7 80 75.0
Sabra09G0072500 Salix brachista HOM05D007211 ORTHO05D009060 2.6e-29 131.7 80 75.0
Lsat_1_v5_gn_9_112060 Lactuca sativa HOM05D007211 ORTHO05D009060 3.3e-29 131.3 80 73.8
Potri.009G094200 Populus trichocarpa HOM05D007211 ORTHO05D009060 4.4e-29 131.0 80 75.0
MD00G1109400 Malus domestica HOM05D007211 ORTHO05D009060 7.4e-29 130.2 80 73.8
TAR376G0209 Trochodendron aralioides HOM05D007211 ORTHO05D009060 1.3e-28 129.4 83 71.1
GSVIVG01037902001 Vitis vinifera HOM05D007211 ORTHO05D009060 1.7e-28 129.0 80 71.2
Aqoxy6G02839 Aquilegia oxysepala HOM05D007211 ORTHO05D009060 3.7e-28 127.9 80 73.8
HanXRQChr03g0068751 Helianthus annuus HOM05D007211 ORTHO05D009060 4.8e-28 127.5 80 73.8
BcaC05g28470 Brassica carinata HOM05D007211 ORTHO05D009060 1.1e-27 126.3 83 71.1
BolC5t33279H Brassica oleracea HOM05D007211 ORTHO05D009060 1.1e-27 126.3 83 71.1
RcHm_v2.0_Chr6g0254661 Rosa chinensis HOM05D007211 ORTHO05D009060 1.4e-27 125.9 80 72.5
A05p30110 Brassica napus HOM05D002228 ORTHO05D002347 1.8e-27 125.6 83 69.9
C05p45540 Brassica napus HOM05D007211 ORTHO05D009060 1.8e-27 125.6 83 69.9
BraA05t21851Z Brassica rapa HOM05D002228 ORTHO05D002347 1.8e-27 125.6 83 69.9
RcHm_v2.0_Chr6g0254711 Rosa chinensis HOM05D007211 ORTHO05D009060 1.8e-27 125.6 80 72.5
AL3G32910 Arabidopsis lyrata HOM05D007211 ORTHO05D009060 2.4e-27 125.2 83 69.9
Sp3g17560 Schrenkiella parvula HOM05D007211 ORTHO05D009060 2.4e-27 125.2 83 68.7
Sc14g0001880 Simmondsia chinensis HOM05D007211 ORTHO05D009060 2.4e-27 125.2 80 67.5
BcaC09g48904 Brassica carinata HOM05D007211 ORTHO05D009060 3.1e-27 124.8 83 68.7
A01p35210 Brassica napus HOM05D007211 ORTHO05D009060 3.1e-27 124.8 83 68.7
BraA01t03602Z Brassica rapa HOM05D007211 ORTHO05D009060 3.1e-27 124.8 83 68.7
Oeu013758.1 Olea europaea HOM05D007211 ORTHO05D009060 3.1e-27 124.8 80 70.0
CARHR094930 Cardamine hirsuta HOM05D007211 ORTHO05D009060 4.1e-27 124.4 83 68.7
Migut.B00396 Erythranthe guttata HOM05D007211 ORTHO05D009060 4.1e-27 124.4 80 68.8
Hund00155 Selenicereus undatus HOM05D000364 ORTHO05D009060 4.1e-27 124.4 80 70.0
CSS0010427 Camellia sinensis var. sinensis HOM05D007211 ORTHO05D009060 5.3e-27 124.0 80 67.5
CSS0021869 Camellia sinensis var. sinensis HOM05D007211 ORTHO05D009060 5.3e-27 124.0 80 67.5
PSO541G5220 Papaver somniferum HOM05D007211 ORTHO05D009060 5.3e-27 124.0 84 70.2
BcaB06g26010 Brassica carinata HOM05D007211 ORTHO05D009060 7.0e-27 123.6 83 68.7
BcaC09g48910 Brassica carinata HOM05D002228 ORTHO05D002347 7.0e-27 123.6 83 67.5
C01p44630 Brassica napus HOM05D007211 ORTHO05D009060 7.0e-27 123.6 83 67.5
BolC1t04431H Brassica oleracea HOM05D007211 ORTHO05D009060 7.0e-27 123.6 83 67.5
FvH4_2g04840 Fragaria vesca HOM05D007211 ORTHO05D009060 7.0e-27 123.6 80 71.2
FAN15G0614 Fragaria x ananassa HOM05D000062 ORTHO05D000043 7.0e-27 123.6 80 71.2
FAN24G1282 Fragaria x ananassa HOM05D000062 ORTHO05D000043 7.0e-27 123.6 80 71.2
ECA240G2095 Erigeron canadensis HOM05D007211 ORTHO05D009060 9.1e-27 123.2 80 70.0
Lj1g0022136 Lotus japonicus HOM05D007211 ORTHO05D009060 9.1e-27 123.2 80 71.2
AT3G19508 Arabidopsis thaliana HOM05D007211 ORTHO05D009060 1.2e-26 122.9 83 67.5
Hma1.2p1_1518F.1_g288450 Hydrangea macrophylla HOM05D007211 ORTHO05D009060 1.6e-26 122.5 80 70.0
FAN27G1079 Fragaria x ananassa HOM05D007211 ORTHO05D009060 2.0e-26 122.1 80 71.2
Carub.0003s1931 Capsella rubella HOM05D007211 ORTHO05D009060 2.6e-26 121.7 83 67.5
Rhsim11G0158600 Rhododendron simsii HOM05D007211 ORTHO05D009060 4.5e-26 120.9 80 68.8
Aa31LG8G6260 Aethionema arabicum HOM05D007211 ORTHO05D009060 5.9e-26 120.6 83 67.5
Actinidia34396 Actinidia chinensis HOM05D007211 ORTHO05D009060 7.7e-26 120.2 80 68.8
AUR62039062 Chenopodium quinoa HOM05D007211 ORTHO05D009060 7.7e-26 120.2 80 67.5
Cc02_g19360 Coffea canephora HOM05D007211 ORTHO05D009060 7.7e-26 120.2 80 70.0
Oeu029529.1 Olea europaea HOM05D007211 ORTHO05D009060 1.0e-25 119.8 80 67.5
Psat4g228560 Pisum sativum HOM05D007211 ORTHO05D009060 1.0e-25 119.8 80 68.8
arahy.Tifrunner.gnm1.ann1.0PG00T Arachis hypogaea HOM05D007211 ORTHO05D009060 1.3e-25 119.4 80 70.0
arahy.Tifrunner.gnm1.ann1.UEWU3Q Arachis hypogaea HOM05D007211 ORTHO05D009060 1.3e-25 119.4 80 70.0
arahy.Tifrunner.gnm1.ann1.YF4EPK Arachis hypogaea HOM05D007211 ORTHO05D009060 1.3e-25 119.4 80 70.0
PGSC0003DMG400025763 Solanum tuberosum HOM05D007211 ORTHO05D009060 1.3e-25 119.4 80 68.8
vmacro01995 Vaccinium macrocarpon HOM05D007211 ORTHO05D009060 1.3e-25 119.4 80 67.5
AUR62010326 Chenopodium quinoa HOM05D007211 ORTHO05D009060 1.7e-25 119.0 80 68.8
Nitab4.5_0001480g0150 Nicotiana tabacum HOM05D007211 ORTHO05D009060 2.2e-25 118.6 80 68.8
MD05G1023600 Malus domestica HOM05D007211 ORTHO05D009060 2.9e-25 118.2 80 68.8
Medtr5g004970 Medicago truncatula HOM05D007211 ORTHO05D009060 2.9e-25 118.2 80 68.8
Rhsim11G0157000 Rhododendron simsii HOM05D007211 ORTHO05D009060 2.9e-25 118.2 80 67.5
Sopen01g049710 Solanum pennellii HOM05D007211 ORTHO05D009060 2.9e-25 118.2 80 67.5
Ca_24347_v3 Cicer arietinum L. HOM05D007211 ORTHO05D009060 3.8e-25 117.9 80 67.5
TPR.G21608 Trifolium pratense HOM05D007211 ORTHO05D009060 5.0e-25 117.5 80 67.5
unitig_0.g876 Utricularia gibba HOM05D007211 ORTHO05D009060 5.0e-25 117.5 80 68.8
DCAR_029091 Daucus carota HOM05D007211 ORTHO05D009060 6.5e-25 117.1 83 63.9
EL10Ac9g22259 Beta vulgaris HOM05D007211 ORTHO05D009060 1.1e-24 116.3 80 66.2
Lalb_Chr09g0319591 Lupinus albus HOM05D007211 ORTHO05D009060 1.5e-24 115.9 80 70.0
Cfa004601 Carpinus fangiana HOM05D007211 ORTHO05D009060 2.1e-23 112.1 81 65.4
Glyma.01G243800 Glycine max HOM05D007211 ORTHO05D009060 1.1e-21 106.3 80 62.5
MD10G1099000 Malus domestica HOM05D007211 ORTHO05D009060 2.0e-21 105.5 69 69.6
Phvul.002G053100 Phaseolus vulgaris HOM05D007211 ORTHO05D009060 2.0e-21 105.5 80 63.8
Nitab4.5_0004326g0030 Nicotiana tabacum HOM05D007211 ORTHO05D009060 7.5e-21 103.6 66 74.2
CDE07G1397 Ceratophyllum demersum HOM05D007211 ORTHO05D009060 1.1e-19 99.8 80 62.5
CAN.G606.15 Capsicum annuum HOM05D007211 ORTHO05D009060 1.8e-19 99.0 65 72.3
BcaB04g20701 Brassica carinata HOM05D002228 ORTHO05D002347 7.7e-18 93.6 92 50.0
Sabra16G0187800 Salix brachista HOM05D007211 ORTHO05D009060 1.0e-17 93.2 57 75.4
Os01g0342800 Oryza sativa ssp. japonica HOM05D007211 ORTHO05D009060 1.3e-17 92.8 77 62.3
MBI16_g16358_MAGBIO Magnolia biondii HOM05D007211 ORTHO05D009060 3.8e-17 91.3 61 72.1
BcaC09g48905 Brassica carinata HOM05D007211 ORTHO05D009060 5.0e-17 90.9 87 52.9
Zm00001eb307960 Zea mays HOM05D007211 ORTHO05D009060 5.0e-17 90.9 76 63.2
BcaC09g48902 Brassica carinata HOM05D007211 ORTHO05D009060 5.5e-16 87.4 108 42.6
AagrBONN_evm.TU.Sc2ySwM_362.2090 Anthoceros agrestis HOM05D007211 ORTHO05D009060 8.0e-15 83.6 81 51.9
AagrBONN_evm.TU.Sc2ySwM_362.1547 Anthoceros agrestis HOM05D007211 ORTHO05D009060 1.8e-14 82.4 81 51.9
BcaC09g48907 Brassica carinata HOM05D007211 ORTHO05D009060 5.7e-13 77.4 51 68.6
Pp3c17_14820 Physcomitrium patens HOM05D007211 ORTHO05D009060 3.2e-08 61.6 60 50.0
CBR_g972 Chara braunii HOM05D007211 ORTHO05D009060 4.2e-08 61.2 77 37.7
AagrBONN_evm.TU.Sc2ySwM_344.3864 Anthoceros agrestis HOM05D007211 ORTHO05D009060 7.2e-08 60.5 59 49.2
Duzib248G0756 Durio zibethinus HOM05D007211 ORTHO05D009060 3.6e-07 58.2 39 71.8


User provided reference genes

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