Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G1453 Cannabis sativa HOM05D001343 ORTHO05D007223 0.0e+00 1166.0 780 100.0
CANSAT25G0854 Cannabis sativa HOM05D001343 ORTHO05D007223 0.0e+00 1161.0 780 99.6
Dinv08526 Davidia involucrata HOM05D001343 ORTHO05D007223 1.3e-212 743.8 744 67.6
MD15G1233300 Malus domestica HOM05D001343 ORTHO05D007223 2.8e-210 736.1 736 67.3
Prupe.7G179600 Prunus persica HOM05D001343 ORTHO05D007223 1.2e-208 730.7 736 69.4
CiPaw.07G004100 Carya illinoinensis HOM05D001343 ORTHO05D007223 9.3e-206 721.1 744 70.8
QL06p052741 Quercus lobata HOM05D001343 ORTHO05D007223 6.0e-205 718.4 776 65.2
Hma1.2p1_0300F.1_g118160 Hydrangea macrophylla HOM05D001343 ORTHO05D007223 7.3e-203 711.4 748 65.5
GSVIVG01003839001 Vitis vinifera HOM05D001343 ORTHO05D007223 1.3e-196 690.6 742 64.7
Duzib187G0329 Durio zibethinus HOM05D001343 ORTHO05D007223 4.8e-194 682.2 747 63.6
FAN23G1852 Fragaria x ananassa HOM05D001343 ORTHO05D007223 8.1e-194 681.4 738 66.5
Actinidia17384 Actinidia chinensis HOM05D001343 ORTHO05D007223 3.1e-193 679.5 744 62.2
Haze_03675 Corylus avellana HOM05D001343 ORTHO05D007223 9.0e-193 677.9 757 65.9
Atru.chr3.956 Acer truncatum HOM05D001343 ORTHO05D007223 1.5e-192 677.2 745 62.8
Dinv40173 Davidia involucrata HOM05D001343 ORTHO05D007223 2.6e-192 676.4 511 75.5
Duzib147G0638 Durio zibethinus HOM05D001343 ORTHO05D007223 7.6e-192 674.9 748 65.5
Lalb_Chr05g0211921 Lupinus albus HOM05D001343 ORTHO05D007223 7.6e-192 674.9 742 65.8
Gohir.A10G099100 Gossypium hirsutum HOM05D001343 ORTHO05D007223 1.7e-191 673.7 744 68.3
TAR381G1734 Trochodendron aralioides HOM05D001343 ORTHO05D007223 4.9e-191 672.2 748 65.9
MD02G1119300 Malus domestica HOM05D001343 ORTHO05D007223 2.7e-189 666.4 733 63.8
THA.LOC104826465 Tarenaya hassleriana HOM05D001343 ORTHO05D007223 1.0e-188 664.5 743 67.2
Aqoxy5G01035 Aquilegia oxysepala HOM05D001343 ORTHO05D007223 2.3e-188 663.3 743 62.9
Hund03615 Selenicereus undatus HOM05D001343 ORTHO05D007223 6.2e-186 655.2 731 64.7
CsaV3_3G000380 Cucumis sativus L. HOM05D001343 ORTHO05D007223 1.5e-184 650.6 742 64.7
Sabra05G0082500 Salix brachista HOM05D001343 ORTHO05D007223 2.6e-184 649.8 738 64.9
TWI09G1271 Tripterygium wilfordii HOM05D001343 ORTHO05D007223 4.5e-184 649.0 746 62.6
Potri.005G099800 Populus trichocarpa HOM05D001343 ORTHO05D007223 5.8e-184 648.7 736 64.4
Sed0023593 Sechium edule HOM05D001343 ORTHO05D007223 2.9e-183 646.4 739 63.5
ClCG10G000340 Citrullus lanatus HOM05D001343 ORTHO05D007223 2.3e-180 636.7 751 63.6
BcaB04g20130 Brassica carinata HOM05D001343 ORTHO05D002008 3.9e-180 636.0 722 64.0
Gohir.D10G089000 Gossypium hirsutum HOM05D001343 ORTHO05D007223 8.7e-180 634.8 748 66.3
Gorai.011G097900 Gossypium raimondii HOM05D001343 ORTHO05D007223 1.5e-179 634.0 748 66.2
FvH4_1g10521 Fragaria vesca HOM05D001343 ORTHO05D007223 1.3e-178 630.9 741 62.5
SGA_v2.0_scaffold12G05990 Striga asiatica HOM05D001343 ORTHO05D007223 1.6e-178 630.6 748 61.4
FAN28G2189 Fragaria x ananassa HOM05D001343 ORTHO05D007223 1.4e-177 627.5 738 63.0
HanXRQChr14g0442391 Helianthus annuus HOM05D001343 ORTHO05D007223 1.4e-177 627.5 743 64.2
QL06p053829 Quercus lobata HOM05D001343 ORTHO05D007223 1.8e-177 627.1 742 64.3
Thecc.01G007100 Theobroma cacao HOM05D001343 ORTHO05D007223 6.9e-177 625.2 748 64.6
Phvul.002G114800 Phaseolus vulgaris HOM05D001343 ORTHO05D007223 1.2e-176 624.4 744 58.1
FAN19G1061 Fragaria x ananassa HOM05D001343 ORTHO05D007223 7.7e-176 621.7 742 61.7
AT5G66030 Arabidopsis thaliana HOM05D001343 ORTHO05D007223 5.5e-174 615.5 753 61.9
Thhalv10003686m.g Eutrema salsugineum HOM05D001343 ORTHO05D007223 3.6e-173 612.8 738 62.6
EL10Ac6g15468 Beta vulgaris HOM05D001343 ORTHO05D007223 1.8e-172 610.5 756 60.6
Cpa.g.sc55.186 Carica papaya HOM05D001343 ORTHO05D007223 8.8e-172 608.2 744 62.5
ECA238G2213 Erigeron canadensis HOM05D001343 ORTHO05D007223 1.7e-170 604.0 737 60.1
TPR.G25095 Trifolium pratense HOM05D001343 ORTHO05D007223 1.2e-168 597.8 744 61.2
PGR083G0487 Punica granatum HOM05D001343 ORTHO05D007223 2.6e-168 596.7 740 60.3
Glyma.01G159900 Glycine max HOM05D001343 ORTHO05D007223 2.2e-167 593.6 745 61.2
BcaC04g23105 Brassica carinata HOM05D001343 ORTHO05D002008 3.8e-167 592.8 723 63.5
C09p12110 Brassica napus HOM05D001343 ORTHO05D002008 3.8e-167 592.8 723 63.5
PSO210G1702 Papaver somniferum HOM05D001343 ORTHO05D007223 3.8e-167 592.8 743 57.2
AL8G45590 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 1.8e-164 583.9 744 60.9
PSO170G3735 Papaver somniferum HOM05D001343 ORTHO05D007223 3.9e-164 582.8 743 59.9
Manes.02G112700 Manihot esculenta HOM05D001343 ORTHO05D007223 2.0e-163 580.5 744 62.0
arahy.Tifrunner.gnm1.ann1.AU9Y8G Arachis hypogaea HOM05D001343 ORTHO05D007223 7.4e-163 578.6 746 61.5
arahy.Tifrunner.gnm1.ann1.SLQH96 Arachis hypogaea HOM05D001343 ORTHO05D007223 7.4e-163 578.6 746 61.5
vmacro20524 Vaccinium macrocarpon HOM05D001343 ORTHO05D007223 6.3e-162 575.5 706 60.9
A09p10220 Brassica napus HOM05D001343 ORTHO05D002008 1.1e-161 574.7 723 60.3
Carub.0008s2848 Capsella rubella HOM05D001343 ORTHO05D007223 4.1e-161 572.8 742 55.5
BraA09t36667Z Brassica rapa HOM05D001343 ORTHO05D002008 9.1e-161 571.6 732 59.7
COL.COLO4_22537 Corchorus olitorius HOM05D001343 ORTHO05D007223 2.0e-160 570.5 744 57.5
MSTRG.15594 Avicennia marina HOM05D001343 ORTHO05D007223 5.9e-160 568.9 743 58.4
BolC9t54101H Brassica oleracea HOM05D001343 ORTHO05D002008 1.7e-159 567.4 730 59.5
Lj2g0004784 Lotus japonicus HOM05D001343 ORTHO05D007223 1.2e-157 561.2 745 59.1
Atru.chr3.968 Acer truncatum HOM05D001343 ORTHO05D007223 3.6e-157 559.7 742 56.3
SalBow5G5069 Salvia bowleyana HOM05D001343 ORTHO05D007223 6.1e-157 558.9 692 62.4
MELO3C013733.2 Cucumis melo HOM05D001343 ORTHO05D007223 8.0e-157 558.5 747 59.4
Nn5g30956 Nelumbo nucifera HOM05D001343 ORTHO05D007223 1.0e-156 558.1 702 58.7
Peaxi162Scf01446g00025 Petunia axillaris HOM05D001343 ORTHO05D007223 1.0e-156 558.1 757 53.5
CSS0043948 Camellia sinensis var. sinensis HOM05D001343 ORTHO05D007223 4.4e-155 552.7 744 58.6
Actinidia22910 Actinidia chinensis HOM05D001343 ORTHO05D007223 2.2e-154 550.4 745 59.3
CAN.G890.76 Capsicum annuum HOM05D001343 ORTHO05D007223 3.7e-154 549.7 745 54.9
Sp2g30660 Schrenkiella parvula HOM05D001343 ORTHO05D007223 1.8e-153 547.4 741 58.8
Nitab4.5_0000702g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 7.0e-153 545.4 747 52.7
Ah.03g148390 Amaranthus hybridus HOM05D001343 ORTHO05D007223 1.2e-152 544.7 746 58.2
Ciclev10024922m.g Citrus clementina HOM05D001343 ORTHO05D007223 1.6e-152 544.3 744 53.4
ATR0661G538 Amborella trichopoda HOM05D001343 ORTHO05D007223 2.9e-151 540.0 751 55.4
Lsat_1_v5_gn_2_74420 Lactuca sativa HOM05D001343 ORTHO05D007223 5.0e-151 539.3 745 58.7
Sc16g0001690 Simmondsia chinensis HOM05D001343 ORTHO05D007223 5.7e-147 525.8 737 56.7
Glyma.11G084200 Glycine max HOM05D001343 ORTHO05D007223 6.3e-146 522.3 744 58.2
Zm00001eb104860 Zea mays HOM05D001343 ORTHO05D007223 2.7e-144 516.9 732 49.7
AUR62003379 Chenopodium quinoa HOM05D001343 ORTHO05D007223 1.7e-143 514.2 740 55.3
Medtr5g023770 Medicago truncatula HOM05D001343 ORTHO05D007223 1.2e-141 508.1 744 55.1
AUR62029449 Chenopodium quinoa HOM05D001343 ORTHO05D007223 8.8e-140 501.9 742 53.9
Os07g0472500 Oryza sativa ssp. japonica HOM05D001343 ORTHO05D007223 7.5e-139 498.8 729 53.2
Ca_24963_v3 Cicer arietinum L. HOM05D001343 ORTHO05D007223 1.3e-135 488.0 767 55.1
Manes.01G153700 Manihot esculenta HOM05D001343 ORTHO05D007223 1.3e-135 488.0 497 60.6
Nitab4.5_0002967g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 8.6e-135 485.3 746 54.6
Sopen02g027640 Solanum pennellii HOM05D001343 ORTHO05D007223 3.3e-134 483.4 746 52.5
Solyc02g082840.3 Solanum lycopersicum HOM05D001343 ORTHO05D007223 4.7e-133 479.6 746 52.4
VMungo1215G1031 Vigna mungo HOM05D001343 ORTHO05D007223 1.8e-132 477.6 744 53.5
Eucgr.J02528 Eucalyptus grandis HOM05D001343 ORTHO05D007223 4.4e-131 473.0 746 52.7
Migut.L00734 Erythranthe guttata HOM05D001343 ORTHO05D007223 7.5e-131 472.2 743 53.7
Cc07_g11650 Coffea canephora HOM05D001343 ORTHO05D007223 9.8e-131 471.9 743 57.6
CARHR281730 Cardamine hirsuta HOM05D001343 ORTHO05D007223 1.2e-123 448.4 418 64.6
unitig_88.g27773 Utricularia gibba HOM05D001343 ORTHO05D007223 5.4e-121 439.5 584 50.9
HPP92_003502 Vanilla planifolia HOM05D001343 ORTHO05D007223 2.9e-114 417.2 743 46.2
Lj4A232G45 Lonicera japonica HOM05D001343 ORTHO05D007223 7.0e-113 412.5 415 61.2
Mapoly0179s0009 Marchantia polymorpha HOM05D001343 ORTHO05D007223 2.3e-108 397.5 715 39.0
DCAR_011583 Daucus carota HOM05D001343 ORTHO05D007223 2.0e-99 367.9 743 48.0
SEGI_12448 Sequoiadendron giganteum HOM05D001343 ORTHO05D007223 9.9e-99 365.5 749 43.8
AagrBONN_evm.TU.Sc2ySwM_344.163 Anthoceros agrestis HOM05D001343 ORTHO05D007223 7.1e-97 359.4 566 43.1
RcHm_v2.0_Chr2g0097461 Rosa chinensis HOM05D001343 ORTHO05D007223 9.0e-84 315.8 518 56.4
Pp3c20_18210 Physcomitrium patens HOM05D001343 ORTHO05D007223 2.5e-78 297.7 725 33.9
RcHm_v2.0_Chr2g0097581 Rosa chinensis HOM05D001343 ORTHO05D007223 1.3e-77 295.4 519 54.9
CDE06G1375 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 8.4e-74 282.7 273 59.0
CDE07G1064 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 9.6e-70 269.2 253 60.9
Pp3c23_9770 Physcomitrium patens HOM05D001343 ORTHO05D007223 2.8e-69 267.7 509 39.5
RcHm_v2.0_Chr2g0097451 Rosa chinensis HOM05D001343 ORTHO05D007223 5.8e-67 260.0 190 78.4
Actinidia26548 Actinidia chinensis HOM05D001343 ORTHO05D007223 2.7e-64 251.1 221 66.5
Psat2g150480 Pisum sativum HOM05D001343 ORTHO05D007223 4.3e-62 243.8 193 72.0
Psat2g150520 Pisum sativum HOM05D001343 ORTHO05D007223 4.3e-54 217.2 466 51.9
CDE07G1287 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 6.1e-48 196.8 249 49.8
Migut.L00811 Erythranthe guttata HOM05D001343 ORTHO05D007223 3.7e-45 187.6 133 79.7
QL06p053793 Quercus lobata HOM05D001343 ORTHO05D007223 1.0e-42 179.5 138 77.5
CBR_g34809 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-40 172.6 368 35.9
Rhsim10G0198000 Rhododendron simsii HOM05D001343 ORTHO05D007223 5.2e-39 167.2 350 40.0
RcHm_v2.0_Chr2g0097571 Rosa chinensis HOM05D001343 ORTHO05D007223 2.0e-38 165.2 123 78.9
arahy.Tifrunner.gnm1.ann1.ISY8LN Arachis hypogaea HOM05D001343 ORTHO05D007223 6.3e-37 160.2 169 56.8
arahy.Tifrunner.gnm1.ann1.9PSP05 Arachis hypogaea HOM05D001343 ORTHO05D007223 1.5e-33 149.1 166 59.0
Migut.L00927 Erythranthe guttata HOM05D001343 ORTHO05D007223 3.2e-33 147.9 325 56.9
arahy.Tifrunner.gnm1.ann1.6P6C0I Arachis hypogaea HOM05D001343 ORTHO05D007223 2.8e-21 108.2 95 70.5
arahy.Tifrunner.gnm1.ann1.T78FCF Arachis hypogaea HOM05D001343 ORTHO05D007223 2.9e-18 98.2 79 70.9
arahy.Tifrunner.gnm1.ann1.QS1PDB Arachis hypogaea HOM05D001343 ORTHO05D007223 5.0e-18 97.4 81 63.0
HPP92_003508 Vanilla planifolia HOM05D001343 ORTHO05D007223 3.6e-16 91.3 56 85.7
QL06p052753 Quercus lobata HOM05D003687 ORTHO05D007223 1.8e-15 89.0 55 81.8
RcHm_v2.0_Chr6g0253501 Rosa chinensis HOM05D001343 ORTHO05D007223 5.2e-15 87.4 94 55.3
AL472U10010 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 1.7e-13 82.4 98 46.9
Aa31LG1G14520 Aethionema arabicum HOM05D001343 ORTHO05D007223 2.9e-13 81.6 212 60.8
Cpa.g.sc1414.4 Carica papaya HOM05D001343 ORTHO05D007223 2.9e-13 81.6 256 57.4
Oeu032010.1 Olea europaea HOM05D001343 ORTHO05D007223 9.2e-12 76.6 106 50.0
QL08p060543 Quercus lobata HOM05D000807 ORTHO05D008987 9.2e-12 76.6 166 39.8
QL08p060183 Quercus lobata HOM05D000807 ORTHO05D008987 1.6e-11 75.9 162 40.1
RcHm_v2.0_Chr2g0097561 Rosa chinensis HOM05D001343 ORTHO05D007223 3.6e-08 64.7 47 70.2
Lsat_1_v5_gn_4_84780 Lactuca sativa HOM05D003172 ORTHO05D007223 1.4e-07 62.8 52 69.2
CDE06G1191 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 4.0e-07 61.2 101 35.6
Glyma.18G186501 Glycine max HOM05D001343 ORTHO05D007223 5.2e-07 60.8 70 51.4
Cre09.g398808 Chlamydomonas reinhardtii HOM05D001343 ORTHO05D007223 8.9e-07 60.1 93 37.6
arahy.Tifrunner.gnm1.ann1.55UCKQ Arachis hypogaea HOM05D050568 ORTHO05D007223 2.6e-06 58.5 69 47.8


User provided reference genes

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