Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G1423 Cannabis sativa HOM05D004018 ORTHO05D004408 0.0e+00 1110.9 590 100.0
Gohir.A12G005900 Gossypium hirsutum HOM05D004018 ORTHO05D004408 4.8e-106 389.4 618 44.7
Gorai.008G005300 Gossypium raimondii HOM05D004018 ORTHO05D004408 1.1e-105 388.3 616 44.8
Duzib138G0587 Durio zibethinus HOM05D004018 ORTHO05D004408 1.8e-105 387.5 633 45.0
Cfa006111 Carpinus fangiana HOM05D004018 ORTHO05D004408 9.1e-105 385.2 631 43.7
Gohir.A08G185500 Gossypium hirsutum HOM05D004018 ORTHO05D004408 2.5e-102 377.1 610 45.1
Gorai.004G215600 Gossypium raimondii HOM05D004018 ORTHO05D004408 2.5e-102 377.1 579 47.0
Gohir.D12G005400 Gossypium hirsutum HOM05D004018 ORTHO05D004408 5.5e-102 375.9 619 44.6
QL12p022414 Quercus lobata HOM05D004018 ORTHO05D004408 5.5e-102 375.9 648 41.2
Atru.chr5.1370 Acer truncatum HOM05D004018 ORTHO05D004408 9.4e-102 375.2 690 40.1
Phvul.007G169800 Phaseolus vulgaris HOM05D004018 ORTHO05D004408 1.2e-101 374.8 622 42.6
GSVIVG01011103001 Vitis vinifera HOM05D004018 ORTHO05D004408 2.7e-101 373.6 668 41.5
THA.LOC104801219 Tarenaya hassleriana HOM05D004018 ORTHO05D004408 5.2e-100 369.4 585 45.0
TAR365G0909 Trochodendron aralioides HOM05D004018 ORTHO05D004408 5.2e-100 369.4 619 43.1
Thecc.01G282900 Theobroma cacao HOM05D004018 ORTHO05D004408 1.2e-99 368.2 640 43.0
Prupe.8G244100 Prunus persica HOM05D004018 ORTHO05D004408 7.5e-99 365.5 600 45.2
COL.COLO4_09133 Corchorus olitorius HOM05D004018 ORTHO05D004408 9.8e-99 365.2 615 42.0
FAN20G3038 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.7e-98 364.4 587 42.2
Haze_04739 Corylus avellana HOM05D004018 ORTHO05D004408 2.8e-98 363.6 681 41.0
TAR365G0933 Trochodendron aralioides HOM05D004018 ORTHO05D004408 2.4e-97 360.5 614 42.5
TAR633G0135 Trochodendron aralioides HOM05D004018 ORTHO05D004408 4.1e-97 359.8 619 41.0
RcHm_v2.0_Chr6g0291481 Rosa chinensis HOM05D004018 ORTHO05D004408 9.1e-97 358.6 608 42.8
FAN27G0494 Fragaria x ananassa HOM05D000644 ORTHO05D004408 2.0e-96 357.5 613 42.1
FvH4_2g23870 Fragaria vesca HOM05D004018 ORTHO05D004408 1.3e-95 354.8 613 41.8
arahy.Tifrunner.gnm1.ann1.6Q7DFN Arachis hypogaea HOM05D004018 ORTHO05D004408 2.9e-95 353.6 572 43.5
Potri.014G139000 Populus trichocarpa HOM05D004018 ORTHO05D004408 2.9e-95 353.6 587 42.8
Actinidia09153 Actinidia chinensis HOM05D004018 ORTHO05D004408 3.8e-95 353.2 683 39.8
Duzib133G0055 Durio zibethinus HOM05D004018 ORTHO05D004408 1.5e-94 351.3 634 41.3
FAN24G0467 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.5e-94 351.3 613 41.8
Ciclev10018884m.g Citrus clementina HOM05D004018 ORTHO05D004408 2.5e-94 350.5 444 49.1
vmacro02552 Vaccinium macrocarpon HOM05D004018 ORTHO05D004408 3.2e-94 350.1 638 41.2
VMungo0720G2698 Vigna mungo HOM05D004018 ORTHO05D004408 3.2e-94 350.1 634 40.9
Carub.0006s3419 Capsella rubella HOM05D004018 ORTHO05D004408 4.2e-94 349.7 588 43.2
TAR636G0803 Trochodendron aralioides HOM05D004018 ORTHO05D004408 7.2e-94 349.0 582 41.4
Oeu028079.1 Olea europaea HOM05D004018 ORTHO05D004408 1.2e-93 348.2 628 39.8
Solyc09g064860.3 Solanum lycopersicum HOM05D004018 ORTHO05D004408 2.1e-93 347.4 629 41.3
Nn4g26185 Nelumbo nucifera HOM05D004018 ORTHO05D004408 6.1e-93 345.9 602 42.4
Rhsim13G0022700 Rhododendron simsii HOM05D000644 ORTHO05D004408 8.0e-93 345.5 617 40.5
Ca_09771_v3 Cicer arietinum L. HOM05D004018 ORTHO05D004408 1.4e-92 344.7 634 41.0
Nitab4.5_0001028g0170 Nicotiana tabacum HOM05D004018 ORTHO05D004408 1.4e-92 344.7 633 40.0
Manes.01G209500 Manihot esculenta HOM05D004018 ORTHO05D004408 2.3e-92 344.0 633 41.9
Sopen09g026560 Solanum pennellii HOM05D004018 ORTHO05D004408 2.3e-92 344.0 630 41.6
MD03G1268400 Malus domestica HOM05D004018 ORTHO05D004408 3.0e-92 343.6 608 43.1
MD11G1289200 Malus domestica HOM05D004018 ORTHO05D004408 3.0e-92 343.6 339 59.9
Nitab4.5_0011633g0010 Nicotiana tabacum HOM05D004018 ORTHO05D004408 4.0e-92 343.2 642 39.7
FAN15G3429 Fragaria x ananassa HOM05D000644 ORTHO05D004408 5.2e-92 342.8 611 40.1
Lalb_Chr21g0306531 Lupinus albus HOM05D004018 ORTHO05D004408 6.8e-92 342.4 619 41.2
MSTRG.12568 Avicennia marina HOM05D004018 ORTHO05D004408 8.9e-92 342.0 647 39.7
Sp6g02920 Schrenkiella parvula HOM05D004018 ORTHO05D004408 8.9e-92 342.0 598 43.0
PSO407G0422 Papaver somniferum HOM05D004018 ORTHO05D004408 3.4e-91 340.1 597 40.9
Aqoxy2G03257 Aquilegia oxysepala HOM05D004018 ORTHO05D004408 5.7e-91 339.3 626 39.6
Medtr1g072560 Medicago truncatula HOM05D004018 ORTHO05D004408 5.7e-91 339.3 677 38.7
PSO170G1481 Papaver somniferum HOM05D004018 ORTHO05D004408 5.7e-91 339.3 608 40.8
arahy.Tifrunner.gnm1.ann1.BX9H6P Arachis hypogaea HOM05D004018 ORTHO05D004408 9.8e-91 338.6 574 43.2
TWI14G0752 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 9.8e-91 338.6 696 38.2
AL6G50040 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 2.2e-90 337.4 585 40.9
AL1G12800 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 1.4e-89 334.7 616 41.7
Carub.0001s0240 Capsella rubella HOM05D004018 ORTHO05D004408 4.1e-89 333.2 599 41.7
CSS0042185 Camellia sinensis var. sinensis HOM05D004018 ORTHO05D004408 5.4e-89 332.8 321 59.8
Sp1g02290 Schrenkiella parvula HOM05D004018 ORTHO05D004408 7.0e-89 332.4 609 40.6
CiPaw.07G093900 Carya illinoinensis HOM05D004018 ORTHO05D004408 1.2e-88 331.6 657 38.8
Psat6g061120 Pisum sativum HOM05D004018 ORTHO05D004408 1.2e-88 331.6 615 40.7
Thhalv10007330m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 3.5e-88 330.1 589 41.9
CARHR251270 Cardamine hirsuta HOM05D004018 ORTHO05D004408 4.5e-88 329.7 582 43.3
TPR.G1562 Trifolium pratense HOM05D004018 ORTHO05D004408 1.3e-87 328.2 668 39.1
C02p39650 Brassica napus HOM05D004018 ORTHO05D004408 5.0e-87 326.2 586 40.1
Lalb_Chr02g0142861 Lupinus albus HOM05D004018 ORTHO05D004408 5.0e-87 326.2 619 38.6
Peaxi162Scf00570g00314 Petunia axillaris HOM05D004018 ORTHO05D004408 1.5e-86 324.7 619 39.1
BraA02t07491Z Brassica rapa HOM05D004018 ORTHO05D004408 2.5e-86 323.9 582 40.5
TWI59G1189 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 4.3e-86 323.2 699 39.1
Actinidia00738 Actinidia chinensis HOM05D004018 ORTHO05D004408 5.6e-86 322.8 313 60.1
A02p25020 Brassica napus HOM05D004018 ORTHO05D004408 5.6e-86 322.8 582 40.5
Sed0023986 Sechium edule HOM05D004018 ORTHO05D004408 7.3e-86 322.4 643 38.4
BcaC03g16187 Brassica carinata HOM05D004018 ORTHO05D004408 9.5e-86 322.0 582 40.2
MELO3C015856.2 Cucumis melo HOM05D004018 ORTHO05D004408 2.1e-85 320.9 631 39.0
AT1G03290 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 3.6e-85 320.1 615 41.1
SalBow4G1908 Salvia bowleyana HOM05D004018 ORTHO05D004408 1.4e-84 318.2 615 40.2
Eucgr.H01516 Eucalyptus grandis HOM05D004018 ORTHO05D004408 3.0e-84 317.0 607 40.9
Gohir.D08G203601 Gossypium hirsutum HOM05D004018 ORTHO05D004408 8.9e-84 315.5 322 58.7
AT4G02880 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 1.5e-83 314.7 591 40.1
ClCG09G006910 Citrullus lanatus HOM05D004018 ORTHO05D004408 3.4e-83 313.5 613 38.2
BcaC05g24644 Brassica carinata HOM05D004018 ORTHO05D004408 5.7e-83 312.8 597 40.7
Hma1.2p1_0628F.1_g191955 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 5.7e-83 312.8 667 36.1
Glyma.02G148900 Glycine max HOM05D004018 ORTHO05D004408 2.9e-82 310.5 603 38.0
Cc01_g19730 Coffea canephora HOM05D004018 ORTHO05D004408 3.7e-82 310.1 637 38.1
Oeu047882.1 Olea europaea HOM05D004018 ORTHO05D004408 4.9e-82 309.7 609 37.9
Lj5g0010123 Lotus japonicus HOM05D004018 ORTHO05D004408 8.3e-82 308.9 640 38.4
CARHR002590 Cardamine hirsuta HOM05D004018 ORTHO05D004408 7.0e-81 305.8 605 39.8
SalBow6G7233 Salvia bowleyana HOM05D004018 ORTHO05D004408 9.2e-81 305.4 621 38.0
Thhalv10028568m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 2.0e-80 304.3 587 40.2
Glyma.10G025000 Glycine max HOM05D004018 ORTHO05D004408 1.0e-79 302.0 338 54.4
Cpa.g.sc837.2 Carica papaya HOM05D004018 ORTHO05D004408 2.3e-79 300.8 272 64.3
C05p01820 Brassica napus HOM05D003188 ORTHO05D003602 3.9e-79 300.1 587 40.9
DCAR_018413 Daucus carota HOM05D004018 ORTHO05D004408 6.6e-79 299.3 571 39.4
Sed0026091 Sechium edule HOM05D004018 ORTHO05D004408 1.1e-78 298.5 602 38.7
DCAR_002748 Daucus carota HOM05D004018 ORTHO05D004408 5.6e-78 296.2 621 37.5
BolC3t16038H Brassica oleracea HOM05D004018 ORTHO05D004408 7.3e-78 295.8 595 39.5
BolC2t09981H Brassica oleracea HOM05D004018 ORTHO05D004408 8.0e-77 292.4 580 37.2
BraA10t42458Z Brassica rapa HOM05D004018 ORTHO05D004408 6.8e-76 289.3 596 37.8
ECA248G1820 Erigeron canadensis HOM05D004018 ORTHO05D004408 8.9e-76 288.9 544 41.7
Aa31LG1G9250 Aethionema arabicum HOM05D004018 ORTHO05D004408 1.2e-75 288.5 598 39.0
TAR362G1233 Trochodendron aralioides HOM05D004018 ORTHO05D004408 1.2e-75 288.5 513 42.3
CiPaw.08G103600 Carya illinoinensis HOM05D004018 ORTHO05D004408 3.4e-75 287.0 756 34.1
BraA03t12255Z Brassica rapa HOM05D004018 ORTHO05D004408 5.8e-75 286.2 582 39.3
PGR044G1283 Punica granatum HOM05D004018 ORTHO05D004408 5.8e-75 286.2 616 36.4
C03p37460 Brassica napus HOM05D004018 ORTHO05D004408 9.8e-75 285.4 584 38.9
MSTRG.18219 Avicennia marina HOM05D004018 ORTHO05D004408 1.3e-74 285.0 454 42.5
BolC5t28960H Brassica oleracea HOM05D003188 ORTHO05D003602 3.7e-74 283.5 586 39.9
A03p30760 Brassica napus HOM05D004018 ORTHO05D004408 4.1e-73 280.0 583 39.5
Lj2A1177T38 Lonicera japonica HOM05D004018 ORTHO05D004408 9.2e-73 278.9 250 62.8
Migut.D00269 Erythranthe guttata HOM05D004018 ORTHO05D004408 1.2e-72 278.5 589 36.7
Migut.N02157 Erythranthe guttata HOM05D004018 ORTHO05D004408 1.3e-71 275.0 588 36.2
A10p01840 Brassica napus HOM05D003188 ORTHO05D003602 5.0e-71 273.1 607 37.7
Eucgr.K03388 Eucalyptus grandis HOM05D004018 ORTHO05D004408 1.9e-70 271.2 630 36.0
CsaV3_7G028620 Cucumis sativus L. HOM05D004018 ORTHO05D004408 2.5e-70 270.8 608 36.3
AUR62033708 Chenopodium quinoa HOM05D004018 ORTHO05D004408 2.1e-69 267.7 634 35.3
AUR62036814 Chenopodium quinoa HOM05D004018 ORTHO05D004408 2.8e-69 267.3 636 35.2
HanXRQChr11g0327641 Helianthus annuus HOM05D004018 ORTHO05D004408 1.1e-68 265.4 544 39.3
HanXRQChr01g0002351 Helianthus annuus HOM05D004018 ORTHO05D004408 2.6e-67 260.8 599 38.1
SGA_v2.0_scaffold258G45767 Striga asiatica HOM05D004018 ORTHO05D004408 2.2e-66 257.7 677 31.8
ATR0626G273 Amborella trichopoda HOM05D004018 ORTHO05D004408 4.1e-65 253.4 612 36.1
HPP92_003154 Vanilla planifolia HOM05D004018 ORTHO05D004408 1.3e-63 248.4 586 37.0
BcaC05g24546 Brassica carinata HOM05D004018 ORTHO05D004408 2.3e-63 247.7 273 55.7
Hund28856 Selenicereus undatus HOM05D004018 ORTHO05D004408 3.9e-63 246.9 277 54.9
Hund28858 Selenicereus undatus HOM05D004018 ORTHO05D004408 3.9e-63 246.9 277 54.9
Sc24g0004120 Simmondsia chinensis HOM05D004018 ORTHO05D004408 3.3e-62 243.8 473 38.3
Atru.chr12.465 Acer truncatum HOM05D004018 ORTHO05D004408 4.7e-61 240.0 227 61.7
Atru.chr12.487 Acer truncatum HOM05D004018 ORTHO05D004408 1.1e-60 238.8 227 61.2
EL10Ac7g17209 Beta vulgaris HOM05D004018 ORTHO05D004408 8.4e-58 229.2 601 34.6
DCAR_012464 Daucus carota HOM05D000644 ORTHO05D000504 1.7e-55 221.5 567 33.7
Zm00001eb349530 Zea mays HOM05D004018 ORTHO05D004408 2.1e-53 214.5 630 31.0
Sabra02G0167700 Salix brachista HOM05D004018 ORTHO05D004408 6.2e-53 213.0 440 37.5
Dinv11250 Davidia involucrata HOM05D004018 ORTHO05D004408 6.9e-52 209.5 460 38.3
Sabra14G0104800 Salix brachista HOM05D004018 ORTHO05D004408 5.8e-51 206.5 425 38.8
CDE05G3031 Ceratophyllum demersum HOM05D004018 ORTHO05D004408 9.9e-51 205.7 545 33.2
MBI17_g12005_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 1.9e-49 201.4 620 31.0
Zm00001eb287880 Zea mays HOM05D004018 ORTHO05D004408 9.3e-49 199.1 297 42.8
Lsat_1_v5_gn_5_187400 Lactuca sativa HOM05D004018 ORTHO05D004408 3.5e-48 197.2 591 31.6
CARHR005950 Cardamine hirsuta HOM05D004018 ORTHO05D004408 1.7e-47 194.9 581 34.4
Pp3c15_12690 Physcomitrium patens HOM05D004018 ORTHO05D004408 2.6e-43 181.0 221 45.2
Os10g0315400 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 1.1e-41 175.6 282 43.3
ECA236G3018 Erigeron canadensis HOM05D004018 ORTHO05D004408 4.2e-41 173.7 248 42.7
SGA_v2.0_scaffold11G05799 Striga asiatica HOM05D004018 ORTHO05D004408 2.1e-40 171.4 582 29.7
Mapoly0005s0053 Marchantia polymorpha HOM05D004018 ORTHO05D004408 2.0e-35 154.8 273 37.7
unitig_0.g1008 Utricularia gibba HOM05D004018 ORTHO05D004408 1.3e-34 152.1 548 29.9
Pp3c9_12210 Physcomitrium patens HOM05D004018 ORTHO05D004408 1.1e-33 149.1 524 28.4
Dinv11249 Davidia involucrata HOM05D004018 ORTHO05D004408 2.4e-33 147.9 173 54.3
HanXRQChr04g0118801 Helianthus annuus HOM05D004018 ORTHO05D004408 5.5e-33 146.7 282 36.9
ECA236G2305 Erigeron canadensis HOM05D004018 ORTHO05D004408 5.6e-30 136.7 179 46.9
Ah.08g213040 Amaranthus hybridus HOM05D004018 ORTHO05D004408 8.4e-26 122.9 122 59.0
HanXRQChr03g0063801 Helianthus annuus HOM05D004018 ORTHO05D004408 1.1e-25 122.5 187 42.8
SMO364G0006 Selaginella moellendorffii HOM05D004018 ORTHO05D004408 3.2e-25 120.9 205 36.1
AagrBONN_evm.TU.Sc2ySwM_228.3859 Anthoceros agrestis HOM05D004018 ORTHO05D004408 1.2e-24 119.0 515 28.0
ECA236G2562 Erigeron canadensis HOM05D004018 ORTHO05D004408 6.0e-24 116.7 235 39.1
BcaC03g15959 Brassica carinata HOM05D004018 ORTHO05D004408 2.2e-21 108.2 135 52.6
MD11G1124600 Malus domestica HOM05D004018 ORTHO05D004408 1.2e-19 102.4 82 68.3
HanXRQChr03g0063751 Helianthus annuus HOM05D004018 ORTHO05D004408 7.7e-19 99.8 219 36.1
ECA247G3795 Erigeron canadensis HOM05D004018 ORTHO05D004408 2.5e-17 94.7 191 37.2
C02p37230 Brassica napus HOM05D004018 ORTHO05D004408 2.1e-16 91.7 91 53.8
HanXRQChr03g0063771 Helianthus annuus HOM05D004018 ORTHO05D004408 3.6e-16 90.9 175 38.9
Gohir.D01G114520 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.0e-15 89.4 85 57.6
Gorai.007G029100 Gossypium raimondii HOM05D004018 ORTHO05D004408 2.2e-13 81.6 61 65.6
Gohir.D06G055550 Gossypium hirsutum HOM05D004018 ORTHO05D004408 3.7e-13 80.9 89 55.1
BolC2t09733H Brassica oleracea HOM05D004018 ORTHO05D004408 1.1e-12 79.3 57 68.4
MBI05_g27108_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 1.1e-12 79.3 76 60.5
VMungo0720G2446 Vigna mungo HOM05D004018 ORTHO05D004408 4.1e-12 77.4 333 28.2
CBR_g40749 Chara braunii HOM05D004018 ORTHO05D004408 2.0e-11 75.1 203 28.1
Os05g0394900 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 3.4e-11 74.3 111 46.8
SEGI_03888 Sequoiadendron giganteum HOM05D004018 ORTHO05D004408 3.4e-11 74.3 200 32.5
PGR031G1662 Punica granatum HOM05D004018 ORTHO05D004408 6.5e-10 70.1 102 43.1
Gorai.013G189300 Gossypium raimondii HOM05D004018 ORTHO05D004408 1.4e-09 68.9 98 42.9
BcaC05g24545 Brassica carinata HOM05D001026 ORTHO05D007776 5.5e-09 67.0 49 65.3
Hma1.2p1_0118F.1_g056525 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 7.2e-09 66.6 53 58.5
Hma1.2p1_0118F.1_g056540 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 7.2e-09 66.6 53 58.5
Gohir.D02G151450 Gossypium hirsutum HOM05D004018 ORTHO05D004408 6.1e-08 63.5 87 46.0
Hund17963 Selenicereus undatus HOM05D004018 ORTHO05D004408 1.4e-07 62.4 378 26.2
Peaxi162Scf00145g00517 Petunia axillaris HOM05D004018 ORTHO05D004408 1.8e-07 62.0 59 54.2
MBI08_g05535_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D004408 6.7e-07 60.1 70 52.9
MBI19_g13735_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 6.7e-07 60.1 100 44.0
Carub.0008s2581 Capsella rubella HOM05D008017 ORTHO05D009829 8.8e-07 59.7 87 42.5
AT5G64980 Arabidopsis thaliana HOM05D008017 ORTHO05D009829 5.7e-06 57.0 46 50.0
AL8G42480 Arabidopsis lyrata HOM05D008017 ORTHO05D009829 7.4e-06 56.6 46 50.0


User provided reference genes

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