Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G1403 Cannabis sativa HOM05D006057 ORTHO05D007224 1.6e-71 272.7 142 100.0
Eucgr.A00985 Eucalyptus grandis HOM05D006057 ORTHO05D007224 2.4e-35 152.5 124 66.9
Potri.014G110300 Populus trichocarpa HOM05D006057 ORTHO05D007224 1.2e-34 150.2 126 61.9
QL09p037524 Quercus lobata HOM05D006057 ORTHO05D007224 1.2e-34 150.2 130 65.4
Atru.chr5.830 Acer truncatum HOM05D006057 ORTHO05D007224 1.3e-33 146.7 133 58.6
COL.COLO4_23092 Corchorus olitorius HOM05D006057 ORTHO05D007224 1.7e-33 146.4 131 61.1
Ciclev10023548m.g Citrus clementina HOM05D006057 ORTHO05D007224 1.5e-32 143.3 105 69.5
Lju2566A1T37 Lonicera japonica HOM05D006057 ORTHO05D007224 1.9e-32 142.9 136 57.4
TAR633G2394 Trochodendron aralioides HOM05D006057 ORTHO05D007224 3.2e-32 142.1 132 59.8
Cpa.g.sc57.50 Carica papaya HOM05D006057 ORTHO05D007224 5.5e-32 141.4 135 58.5
Duzib138G1502 Durio zibethinus HOM05D006057 ORTHO05D007224 7.2e-32 141.0 134 59.0
arahy.Tifrunner.gnm1.ann1.TF3SPP Arachis hypogaea HOM05D006057 ORTHO05D007224 9.4e-32 140.6 125 61.6
Gohir.D12G122500 Gossypium hirsutum HOM05D006057 ORTHO05D007224 9.4e-32 140.6 132 60.6
Sp6g39640 Schrenkiella parvula HOM05D006057 ORTHO05D007224 9.4e-32 140.6 124 61.3
BcaC03g13034 Brassica carinata HOM05D006057 ORTHO05D007224 1.6e-31 139.8 125 60.0
BcaC03g13036 Brassica carinata HOM05D006057 ORTHO05D007224 1.6e-31 139.8 125 60.0
Nitab4.5_0002450g0080 Nicotiana tabacum HOM05D006057 ORTHO05D007224 2.1e-31 139.4 128 60.9
PGSC0003DMG400014183 Solanum tuberosum HOM05D006057 ORTHO05D007224 2.1e-31 139.4 129 61.2
Sopen03g037330 Solanum pennellii HOM05D006057 ORTHO05D007224 2.7e-31 139.0 129 61.2
arahy.Tifrunner.gnm1.ann1.78VVNS Arachis hypogaea HOM05D006057 ORTHO05D007224 4.7e-31 138.3 117 64.1
RcHm_v2.0_Chr2g0148291 Rosa chinensis HOM05D006057 ORTHO05D007224 4.7e-31 138.3 131 53.4
Gorai.008G133300 Gossypium raimondii HOM05D006057 ORTHO05D007224 8.0e-31 137.5 131 60.3
Nitab4.5_0002046g0150 Nicotiana tabacum HOM05D006057 ORTHO05D007224 8.0e-31 137.5 128 60.9
Solyc03g118440.3 Solanum lycopersicum HOM05D006057 ORTHO05D007224 8.0e-31 137.5 129 60.5
BcaB05g21854 Brassica carinata HOM05D006057 ORTHO05D007224 1.0e-30 137.1 125 58.4
FvH4_6g36280 Fragaria vesca HOM05D006057 ORTHO05D007224 1.0e-30 137.1 119 58.8
Lj1C4G2 Lonicera japonica HOM05D006057 ORTHO05D007224 1.0e-30 137.1 126 60.3
Rhsim01G0001300 Rhododendron simsii HOM05D006057 ORTHO05D007224 1.0e-30 137.1 132 59.1
vmacro02351 Vaccinium macrocarpon HOM05D006057 ORTHO05D007224 1.4e-30 136.7 123 61.0
AL6G12340 Arabidopsis lyrata HOM05D006057 ORTHO05D007224 1.8e-30 136.3 135 58.5
CSS0031729 Camellia sinensis var. sinensis HOM05D006057 ORTHO05D007224 1.8e-30 136.3 132 56.8
Manes.05G006500 Manihot esculenta HOM05D006057 ORTHO05D007224 1.8e-30 136.3 133 57.1
BraA02t04741Z Brassica rapa HOM05D006057 ORTHO05D007224 2.3e-30 136.0 125 58.4
CARHR210270 Cardamine hirsuta HOM05D006057 ORTHO05D007224 2.3e-30 136.0 125 60.8
Nn4g25242 Nelumbo nucifera HOM05D006057 ORTHO05D007224 2.3e-30 136.0 135 54.1
BcaC06g32028 Brassica carinata HOM05D006057 ORTHO05D007224 4.0e-30 135.2 124 60.5
C02p00760 Brassica napus HOM05D006057 ORTHO05D007224 4.0e-30 135.2 90 73.3
BolC2t06074H Brassica oleracea HOM05D006057 ORTHO05D007224 4.0e-30 135.2 90 73.3
Haze_05170 Corylus avellana HOM05D006057 ORTHO05D007224 4.0e-30 135.2 112 64.3
BraA10t45317Z Brassica rapa HOM05D006057 ORTHO05D007224 5.2e-30 134.8 123 59.3
PGR042G0310 Punica granatum HOM05D006057 ORTHO05D007224 5.2e-30 134.8 130 56.9
BcaC06g32027 Brassica carinata HOM05D006057 ORTHO05D007224 6.7e-30 134.4 122 59.0
BcaNung04734 Brassica carinata HOM05D006057 ORTHO05D007224 6.7e-30 134.4 122 59.0
BolC9t60103H Brassica oleracea HOM05D006057 ORTHO05D007224 6.7e-30 134.4 122 59.0
Thhalv10015298m.g Eutrema salsugineum HOM05D006057 ORTHO05D007224 6.7e-30 134.4 90 74.4
Peaxi162Scf00314g00430 Petunia axillaris HOM05D006057 ORTHO05D007224 6.7e-30 134.4 128 59.4
Hma1.2p1_0350F.1_g132530 Hydrangea macrophylla HOM05D006057 ORTHO05D007224 8.8e-30 134.0 123 62.6
Prupe.3G028700 Prunus persica HOM05D006057 ORTHO05D007224 8.8e-30 134.0 129 55.8
GSVIVG01028268001 Vitis vinifera HOM05D006057 ORTHO05D007224 1.2e-29 133.7 104 68.3
AT5G03050 Arabidopsis thaliana HOM05D006057 ORTHO05D007224 1.5e-29 133.3 90 74.4
BcaNung05509 Brassica carinata HOM05D006057 ORTHO05D007224 1.5e-29 133.3 90 73.3
Aa31LG1G21980 Aethionema arabicum HOM05D006057 ORTHO05D007224 2.0e-29 132.9 124 59.7
C09p73700 Brassica napus HOM05D006057 ORTHO05D007224 2.0e-29 132.9 122 59.0
MD17G1156700 Malus domestica HOM05D006057 ORTHO05D007224 2.0e-29 132.9 131 54.2
BolC9t60100H Brassica oleracea HOM05D006057 ORTHO05D007224 2.6e-29 132.5 129 56.6
Medtr1g085355 Medicago truncatula HOM05D006057 ORTHO05D007224 2.6e-29 132.5 120 61.7
Gohir.A12G118700 Gossypium hirsutum HOM05D006057 ORTHO05D007224 4.4e-29 131.7 132 58.3
Medtr4g118050 Medicago truncatula HOM05D006057 ORTHO05D007224 7.5e-29 131.0 119 60.5
TPR.G3097 Trifolium pratense HOM05D006057 ORTHO05D007224 7.5e-29 131.0 118 59.3
DCAR_012291 Daucus carota HOM05D006057 ORTHO05D007224 9.7e-29 130.6 130 54.6
Lj5g0024678 Lotus japonicus HOM05D006057 ORTHO05D007224 9.7e-29 130.6 120 60.0
Carub.0006s0184 Capsella rubella HOM05D006057 ORTHO05D007224 1.3e-28 130.2 138 54.3
DCAR_012292 Daucus carota HOM05D006057 ORTHO05D007224 1.3e-28 130.2 131 54.2
HanXRQChr07g0194641 Helianthus annuus HOM05D006057 ORTHO05D007224 1.3e-28 130.2 130 56.2
Migut.L01023 Erythranthe guttata HOM05D006057 ORTHO05D007224 1.7e-28 129.8 108 63.0
Medtr1g085440 Medicago truncatula HOM05D006057 ORTHO05D007224 1.7e-28 129.8 120 59.2
CAN.G843.33 Capsicum annuum HOM05D006057 ORTHO05D007224 2.2e-28 129.4 128 57.8
TWI14G0531 Tripterygium wilfordii HOM05D006057 ORTHO05D007224 4.8e-28 128.3 155 51.0
Migut.L00999 Erythranthe guttata HOM05D006057 ORTHO05D007224 6.3e-28 127.9 107 63.6
Migut.L00831 Erythranthe guttata HOM05D006057 ORTHO05D007224 1.4e-27 126.7 97 67.0
Psat6g157560 Pisum sativum HOM05D006057 ORTHO05D007224 1.8e-27 126.3 119 57.1
Glyma.10G140400 Glycine max HOM05D006057 ORTHO05D007224 2.4e-27 125.9 116 59.5
SGA_v2.0_scaffold38G15005 Striga asiatica HOM05D006057 ORTHO05D007224 4.1e-27 125.2 119 58.8
Lalb_Chr02g0147311 Lupinus albus HOM05D006057 ORTHO05D007224 5.3e-27 124.8 84 75.0
ECA238G2998 Erigeron canadensis HOM05D006057 ORTHO05D007224 9.1e-27 124.0 131 51.1
Gohir.A07G132650 Gossypium hirsutum HOM05D006057 ORTHO05D007224 9.1e-27 124.0 100 67.0
MBI18_g03875_MAGBIO Magnolia biondii HOM05D006057 ORTHO05D007224 9.1e-27 124.0 120 53.3
Nitab4.5_0001841g0090 Nicotiana tabacum HOM05D006057 ORTHO05D007224 9.1e-27 124.0 137 54.0
Sed0018142 Sechium edule HOM05D006057 ORTHO05D007224 9.1e-27 124.0 129 55.8
Ca_10224_v3 Cicer arietinum L. HOM05D006057 ORTHO05D007224 1.2e-26 123.6 118 58.5
SGA_v2.0_scaffold36G14563 Striga asiatica HOM05D006057 ORTHO05D007224 1.2e-26 123.6 118 59.3
ClCG10G013240 Citrullus lanatus HOM05D006057 ORTHO05D007224 1.6e-26 123.2 129 52.7
SHI19776 Sapria himalayana HOM05D006057 ORTHO05D007224 1.6e-26 123.2 107 59.8
TWI59G0504 Tripterygium wilfordii HOM05D006057 ORTHO05D007224 2.0e-26 122.9 124 57.3
Oeu048368.1 Olea europaea HOM05D006057 ORTHO05D007224 2.7e-26 122.5 120 57.5
CsaV3_3G043390 Cucumis sativus L. HOM05D006057 ORTHO05D007224 4.5e-26 121.7 129 54.3
CDE01G0754 Ceratophyllum demersum HOM05D006057 ORTHO05D007224 7.7e-26 120.9 89 67.4
Phvul.007G207500 Phaseolus vulgaris HOM05D006057 ORTHO05D007224 1.0e-25 120.6 119 59.7
Sabra02G0131200 Salix brachista HOM05D006057 ORTHO05D007224 1.0e-25 120.6 94 64.9
MELO3C026900.2 Cucumis melo HOM05D006057 ORTHO05D007224 1.3e-25 120.2 129 52.7
Actinidia21332 Actinidia chinensis HOM05D006057 ORTHO05D007224 1.7e-25 119.8 85 71.8
VMungo0720G1137 Vigna mungo HOM05D006057 ORTHO05D007224 2.2e-25 119.4 94 64.9
Aqoxy5G02874 Aquilegia oxysepala HOM05D006057 ORTHO05D007224 3.8e-25 118.6 132 52.3
PSO339G1810 Papaver somniferum HOM05D006057 ORTHO05D007224 1.1e-24 117.1 122 53.3
Nitab4.5_0010904g0040 Nicotiana tabacum HOM05D006057 ORTHO05D007224 1.5e-24 116.7 137 49.6
Lsat_1_v5_gn_2_108401 Lactuca sativa HOM05D006057 ORTHO05D007224 1.9e-24 116.3 128 53.1
PSO170G4276 Papaver somniferum HOM05D006057 ORTHO05D007224 7.2e-24 114.4 127 50.4
PSO081G0045 Papaver somniferum HOM05D006057 ORTHO05D007224 4.7e-23 111.7 122 51.6
Cc08_g05070 Coffea canephora HOM05D006057 ORTHO05D007224 1.4e-22 110.2 110 56.4
Glyma.20G089200 Glycine max HOM05D006057 ORTHO05D007224 1.8e-22 109.8 146 48.6
unitig_26.g10007 Utricularia gibba HOM05D006057 ORTHO05D007224 3.0e-22 109.0 119 47.9
CDE12G0816 Ceratophyllum demersum HOM05D006057 ORTHO05D007224 8.8e-22 107.5 71 74.6
Hund22023 Selenicereus undatus HOM05D006057 ORTHO05D007224 1.5e-21 106.7 136 45.6
Sc09g0000780 Simmondsia chinensis HOM05D006057 ORTHO05D007224 3.4e-21 105.5 95 57.9
EL10Ac4g10232 Beta vulgaris HOM05D006057 ORTHO05D007224 5.7e-21 104.8 135 43.0
HPP92_026861 Vanilla planifolia HOM05D006057 ORTHO05D007224 1.7e-20 103.2 100 54.0
AUR62000136 Chenopodium quinoa HOM05D006057 ORTHO05D007224 1.1e-19 100.5 98 50.0
Ah.04g162100 Amaranthus hybridus HOM05D006057 ORTHO05D007224 5.4e-19 98.2 95 51.6
Ah.06g194050 Amaranthus hybridus HOM05D006057 ORTHO05D007224 7.0e-19 97.8 94 53.2
Gorai.001G149000 Gossypium raimondii HOM05D006057 ORTHO05D007224 1.6e-18 96.7 68 73.5
CiPaw.07G127700 Carya illinoinensis HOM05D006057 ORTHO05D007224 5.9e-18 94.7 102 52.9
BcaNung05508 Brassica carinata HOM05D006057 ORTHO05D007224 7.7e-18 94.4 92 52.2
ATR0019G040 Amborella trichopoda HOM05D006057 ORTHO05D007224 1.0e-17 94.0 85 56.5
AUR62019316 Chenopodium quinoa HOM05D006057 ORTHO05D007224 1.3e-17 93.6 84 53.6
Gohir.D07G136950 Gossypium hirsutum HOM05D006057 ORTHO05D007224 1.7e-17 93.2 68 73.5
Zm00001eb000680 Zea mays HOM05D006057 ORTHO05D007224 2.9e-17 92.4 91 50.5
Potri.002G184600 Populus trichocarpa HOM05D006057 ORTHO05D007224 5.0e-17 91.7 102 52.9
CANSAT25G3159 Cannabis sativa HOM05D006057 ORTHO05D007224 8.6e-17 90.9 76 68.4
SEGI_31615 Sequoiadendron giganteum HOM05D006057 ORTHO05D007224 8.6e-17 90.9 100 50.0
Os03g0108700 Oryza sativa ssp. japonica HOM05D006057 ORTHO05D007224 7.2e-16 87.8 78 52.6
SMO361G0765 Selaginella moellendorffii HOM05D006057 ORTHO05D007224 3.4e-13 79.0 86 48.8
Dinv05504 Davidia involucrata HOM05D006057 ORTHO05D007224 5.7e-13 78.2 88 52.3
TPR.G3076 Trifolium pratense HOM05D006057 ORTHO05D007224 1.1e-11 73.9 82 51.2
Pp3c25_8550 Physcomitrium patens HOM05D006057 ORTHO05D007224 6.6e-09 64.7 88 42.0
CBR_g39249 Chara braunii HOM05D006057 ORTHO05D007224 1.1e-08 63.9 80 40.0


User provided reference genes

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