Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G1370 Cannabis sativa HOM05D005743 ORTHO05D007031 2.4e-306 1054.7 535 100.0
MD03G1288600 Malus domestica HOM05D005743 ORTHO05D007031 1.8e-245 852.4 535 80.4
Dinv19686 Davidia involucrata HOM05D005743 ORTHO05D007031 8.5e-243 843.6 533 79.7
Prupe.8G261900 Prunus persica HOM05D005743 ORTHO05D007031 4.2e-242 841.3 535 79.6
Thecc.01G301000 Theobroma cacao HOM05D005743 ORTHO05D007031 6.3e-238 827.4 535 78.3
FAN20G0637 Fragaria x ananassa HOM05D005743 ORTHO05D007031 1.1e-237 826.6 533 78.6
COL.COLO4_23341 Corchorus olitorius HOM05D005743 ORTHO05D007031 1.8e-237 825.9 536 77.6
FAN15G2676 Fragaria x ananassa HOM05D005743 ORTHO05D007031 1.8e-237 825.9 535 78.7
Hma1.2p1_0491F.1_g164590 Hydrangea macrophylla HOM05D005743 ORTHO05D007031 2.0e-236 822.4 532 77.1
Atru.chr5.1142 Acer truncatum HOM05D005743 ORTHO05D007031 2.6e-236 822.0 536 78.4
RcHm_v2.0_Chr6g0294071 Rosa chinensis HOM05D005743 ORTHO05D007031 3.5e-236 821.6 535 77.9
TAR362G0334 Trochodendron aralioides HOM05D005743 ORTHO05D007031 1.0e-235 820.1 535 77.9
Cfa005908 Carpinus fangiana HOM05D005743 ORTHO05D007031 7.2e-234 813.9 537 77.8
Ciclev10019600m.g Citrus clementina HOM05D005743 ORTHO05D007031 8.0e-233 810.4 530 77.2
Potri.014G128600 Populus trichocarpa HOM05D005743 ORTHO05D007031 1.4e-232 809.7 533 77.5
Sopen06g003890 Solanum pennellii HOM05D005743 ORTHO05D007031 3.0e-232 808.5 533 76.9
QL12p028420 Quercus lobata HOM05D005743 ORTHO05D007031 4.0e-232 808.1 532 76.7
Solyc06g009130.3 Solanum lycopersicum HOM05D005743 ORTHO05D007031 2.0e-231 805.8 533 76.9
Manes.01G219600 Manihot esculenta HOM05D005743 ORTHO05D007031 9.7e-231 803.5 533 76.0
Nitab4.5_0005805g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 6.3e-230 800.8 533 76.9
TWI59G0198 Tripterygium wilfordii HOM05D005743 ORTHO05D007031 7.0e-229 797.3 535 74.8
Rhsim01G0285500 Rhododendron simsii HOM05D005743 ORTHO05D007031 1.6e-228 796.2 524 76.5
Oeu046676.1 Olea europaea HOM05D005743 ORTHO05D007031 2.0e-228 795.8 534 75.1
Gorai.007G127900 Gossypium raimondii HOM05D005743 ORTHO05D007031 2.7e-228 795.4 535 75.1
Cpa.g.sc9.258 Carica papaya HOM05D005743 ORTHO05D007031 5.9e-228 794.3 528 76.1
PSO170G2277 Papaver somniferum HOM05D005743 ORTHO05D007031 5.9e-228 794.3 537 76.5
MBI18_g06031_MAGBIO Magnolia biondii HOM05D005743 ORTHO05D007031 1.0e-227 793.5 535 75.9
Nitab4.5_0002470g0070 Nicotiana tabacum HOM05D005743 ORTHO05D007031 1.3e-227 793.1 533 75.4
Aqoxy2G02938 Aquilegia oxysepala HOM05D005743 ORTHO05D007031 1.7e-227 792.7 535 75.3
Lj5g0015401 Lotus japonicus HOM05D005743 ORTHO05D007031 1.7e-227 792.7 535 75.3
Duzib138G1616 Durio zibethinus HOM05D005743 ORTHO05D007031 5.0e-227 791.2 535 75.3
MELO3C017953.2 Cucumis melo HOM05D005743 ORTHO05D007031 1.1e-226 790.0 525 77.9
PSO407G0387 Papaver somniferum HOM05D005743 ORTHO05D007031 1.1e-226 790.0 537 75.8
Sed0000130 Sechium edule HOM05D005743 ORTHO05D007031 2.5e-226 788.9 534 76.0
CSS0024650 Camellia sinensis var. sinensis HOM05D005743 ORTHO05D007031 4.2e-226 788.1 533 75.0
CAN.G1989.8 Capsicum annuum HOM05D005743 ORTHO05D007031 4.2e-226 788.1 533 75.4
CsaV3_4G000840 Cucumis sativus L. HOM05D005743 ORTHO05D007031 1.2e-225 786.6 525 77.0
FvH4_2g25770 Fragaria vesca HOM05D005743 ORTHO05D007031 8.0e-225 783.9 491 81.1
Lj2A1195G24 Lonicera japonica HOM05D005743 ORTHO05D007031 2.0e-223 779.2 533 74.1
PGR044G1461 Punica granatum HOM05D005743 ORTHO05D007031 4.4e-223 778.1 595 69.1
VMungo0720G3165 Vigna mungo HOM05D005743 ORTHO05D007031 1.3e-222 776.5 535 74.0
arahy.Tifrunner.gnm1.ann1.V1RZF6 Arachis hypogaea HOM05D005743 ORTHO05D007031 2.2e-222 775.8 536 74.6
Medtr1g088430 Medicago truncatula HOM05D005743 ORTHO05D007031 2.2e-222 775.8 537 74.7
arahy.Tifrunner.gnm1.ann1.39WPG8 Arachis hypogaea HOM05D005743 ORTHO05D007031 2.8e-222 775.4 536 74.6
Cc01_g20880 Coffea canephora HOM05D005743 ORTHO05D007031 6.3e-222 774.2 525 75.8
FAN24G1083 Fragaria x ananassa HOM05D005743 ORTHO05D007031 1.8e-221 772.7 492 79.5
Gohir.D11G119400 Gossypium hirsutum HOM05D005743 ORTHO05D007031 3.1e-221 771.9 534 73.4
Ca_10331_v3 Cicer arietinum L. HOM05D005743 ORTHO05D007031 5.4e-221 771.2 531 74.4
Sc05g0003820 Simmondsia chinensis HOM05D005743 ORTHO05D007031 7.0e-221 770.8 523 74.6
Glyma.10G018000 Glycine max HOM05D005743 ORTHO05D007031 2.0e-220 769.2 535 73.3
TPR.G33974 Trifolium pratense HOM05D005743 ORTHO05D007031 1.0e-219 766.9 537 74.7
Sabra14G0095500 Salix brachista HOM05D005743 ORTHO05D007031 3.8e-219 765.0 549 71.6
Migut.D00150 Erythranthe guttata HOM05D005743 ORTHO05D007031 5.0e-219 764.6 533 73.4
THA.LOC104817489 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 6.5e-219 764.2 523 73.2
Phvul.007G147000 Phaseolus vulgaris HOM05D005743 ORTHO05D007031 1.5e-218 763.1 535 72.1
GSVIVG01028023001 Vitis vinifera HOM05D005743 ORTHO05D007031 3.2e-218 761.9 526 74.5
CAN.G1280.3 Capsicum annuum HOM05D005743 ORTHO05D007031 7.2e-218 760.8 535 73.6
ClCG10G010970 Citrullus lanatus HOM05D005743 ORTHO05D007031 1.6e-217 759.6 567 71.4
THA.LOC104827666 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 5.2e-216 754.6 523 71.9
Peaxi162Scf00399g00716 Petunia axillaris HOM05D005743 ORTHO05D007031 2.0e-215 752.7 510 73.9
HanXRQChr13g0413001 Helianthus annuus HOM05D005743 ORTHO05D007031 7.5e-215 750.7 530 71.5
Carub.0004s3033 Capsella rubella HOM05D005743 ORTHO05D007031 4.9e-214 748.0 524 72.7
SalBow2G1764 Salvia bowleyana HOM05D005743 ORTHO05D007031 4.9e-214 748.0 535 70.3
Thhalv10001391m.g Eutrema salsugineum HOM05D005743 ORTHO05D007031 8.3e-214 747.3 524 71.9
AL4G47180 Arabidopsis lyrata HOM05D005743 ORTHO05D007031 3.1e-213 745.3 526 71.9
AT2G47600 Arabidopsis thaliana HOM05D005743 ORTHO05D007031 3.1e-213 745.3 526 71.7
CARHR143000 Cardamine hirsuta HOM05D005743 ORTHO05D007031 3.1e-213 745.3 524 71.8
Migut.N01507 Erythranthe guttata HOM05D005743 ORTHO05D007031 4.1e-213 745.0 531 72.7
Migut.O00421 Erythranthe guttata HOM05D005743 ORTHO05D007031 7.0e-213 744.2 531 72.9
BraA05t19031Z Brassica rapa HOM05D005743 ORTHO05D007031 1.2e-212 743.4 525 71.4
Aa31LG1G28940 Aethionema arabicum HOM05D005743 ORTHO05D007031 1.6e-212 743.0 524 72.7
C04p00250 Brassica napus HOM05D005743 ORTHO05D007031 7.8e-212 740.7 525 71.0
BolC4t21668H Brassica oleracea HOM05D005743 ORTHO05D007031 7.8e-212 740.7 525 71.0
Eucgr.K03487 Eucalyptus grandis HOM05D005743 ORTHO05D007031 1.7e-211 739.6 523 73.2
DCAR_005790 Daucus carota HOM05D005743 ORTHO05D007031 2.3e-211 739.2 554 69.0
A05p00330 Brassica napus HOM05D005743 ORTHO05D007031 3.8e-211 738.4 525 71.2
Sc05g0003780 Simmondsia chinensis HOM05D005743 ORTHO05D007031 4.7e-209 731.5 523 71.1
AUR62008667 Chenopodium quinoa HOM05D005743 ORTHO05D007031 1.0e-208 730.3 528 70.5
AUR62025577 Chenopodium quinoa HOM05D005743 ORTHO05D007031 1.0e-208 730.3 530 70.6
SalBow3G4402 Salvia bowleyana HOM05D005743 ORTHO05D007031 1.8e-208 729.6 536 70.3
Lsat_1_v5_gn_5_191280 Lactuca sativa HOM05D005743 ORTHO05D007031 7.5e-207 724.2 532 70.1
Os11g0660000 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 2.9e-206 722.2 524 69.5
CDE02G2026 Ceratophyllum demersum HOM05D005743 ORTHO05D007031 8.3e-206 720.7 532 69.9
SGA_v2.0_scaffold198G41143 Striga asiatica HOM05D005743 ORTHO05D007031 2.4e-205 719.2 552 67.9
EL10Ac7g17510 Beta vulgaris HOM05D005743 ORTHO05D007031 5.4e-205 718.0 520 70.8
ECA248G2514 Erigeron canadensis HOM05D005743 ORTHO05D007031 1.3e-203 713.4 499 73.1
Hund18172 Selenicereus undatus HOM05D005743 ORTHO05D007031 2.5e-202 709.1 532 67.7
Eucgr.K03488 Eucalyptus grandis HOM05D005743 ORTHO05D007031 3.3e-202 708.8 480 74.4
HPP92_016082 Vanilla planifolia HOM05D005743 ORTHO05D007031 7.3e-202 707.6 525 68.4
RcHm_v2.0_Chr6g0294081 Rosa chinensis HOM05D005743 ORTHO05D007031 8.0e-201 704.1 538 69.3
Actinidia24820 Actinidia chinensis HOM05D005743 ORTHO05D007031 2.6e-199 699.1 493 73.4
Ah.08g213420 Amaranthus hybridus HOM05D005743 ORTHO05D007031 1.6e-193 679.9 532 66.0
BcaB02g08759 Brassica carinata HOM05D005743 ORTHO05D007031 2.2e-190 669.5 524 66.2
Haze_04942 Corylus avellana HOM05D005743 ORTHO05D007031 1.2e-188 663.7 578 65.1
Lalb_Chr06g0166491 Lupinus albus HOM05D005743 ORTHO05D007031 6.6e-187 657.9 558 63.8
FAN27G1322 Fragaria x ananassa HOM05D005743 ORTHO05D007031 3.0e-179 632.5 408 78.4
Nn4g25787 Nelumbo nucifera HOM05D005743 ORTHO05D007031 9.0e-176 620.9 414 75.6
SGA_v2.0_scaffold1G00362 Striga asiatica HOM05D005743 ORTHO05D007031 1.3e-174 617.1 514 64.8
Psat6g165240 Pisum sativum HOM05D005743 ORTHO05D007031 1.5e-167 593.6 415 73.7
Peaxi162Scf00001g04234 Petunia axillaris HOM05D005743 ORTHO05D007031 2.2e-126 456.8 543 50.5
Nitab4.5_0001879g0130 Nicotiana tabacum HOM05D005743 ORTHO05D007031 5.5e-125 452.2 542 48.9
vmacro15016 Vaccinium macrocarpon HOM05D005743 ORTHO05D007031 1.2e-124 451.1 358 67.6
CiPaw.08G094900 Carya illinoinensis HOM05D005743 ORTHO05D007031 2.4e-120 436.8 294 73.8
Gohir.A11G114301 Gossypium hirsutum HOM05D005743 ORTHO05D007031 8.0e-116 421.8 298 71.1
Mapoly0134s0038 Marchantia polymorpha HOM05D005743 ORTHO05D007031 1.2e-114 417.9 533 43.9
AagrBONN_evm.TU.Sc2ySwM_344.5359 Anthoceros agrestis HOM05D005743 ORTHO05D007031 9.7e-114 414.8 537 44.5
Pp3c1_39250 Physcomitrium patens HOM05D005743 ORTHO05D007031 3.7e-113 412.9 547 43.1
ATR0706G014 Amborella trichopoda HOM05D005743 ORTHO05D007031 1.1e-112 411.4 266 75.6
Hund18173 Selenicereus undatus HOM05D005743 ORTHO05D007031 3.4e-106 389.8 269 72.1
Pp3c2_6060 Physcomitrium patens HOM05D005743 ORTHO05D007031 2.2e-105 387.1 547 41.3
Zm00001eb165450 Zea mays HOM05D005743 ORTHO05D007031 1.6e-103 380.9 342 58.8
AagrBONN_evm.TU.Sc2ySwM_368.1084 Anthoceros agrestis HOM05D005743 ORTHO05D007031 1.5e-98 364.4 547 38.8
SMO351G0556 Selaginella moellendorffii HOM05D005743 ORTHO05D007031 6.6e-86 322.4 426 42.5
CBR_g22437 Chara braunii HOM05D005743 ORTHO05D007031 2.3e-75 287.3 628 32.5
Actinidia26720 Actinidia chinensis HOM05D005743 ORTHO05D007031 6.8e-75 285.8 321 52.6
THA.LOC104798829 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 3.7e-73 280.0 168 80.4
Os02g0644900 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 2.1e-63 247.7 228 58.8
Nitab4.5_0002433g0030 Nicotiana tabacum HOM05D005743 ORTHO05D007031 3.8e-57 226.9 270 50.4
SEGI_24798 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 8.7e-54 215.7 162 67.9
PRCOL_00004461 Prasinoderma coloniale HOM05D005743 ORTHO05D007031 1.9e-53 214.5 705 27.8
EL10Ac3g06395 Beta vulgaris HOM05D005743 ORTHO05D007031 1.1e-51 208.8 152 69.7
Zm00001eb407450 Zea mays HOM05D005743 ORTHO05D007031 8.4e-49 199.1 174 59.8
Actinidia21045 Actinidia chinensis HOM05D005743 ORTHO05D007031 1.1e-48 198.7 106 86.8
SEGI_13510 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 3.8e-41 173.7 115 73.9
Rhsim05G0173900 Rhododendron simsii HOM05D005743 ORTHO05D007031 1.2e-39 168.7 120 70.8
Actinidia21044 Actinidia chinensis HOM05D005743 ORTHO05D007031 6.2e-36 156.4 122 63.9
Nitab4.5_0002433g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 2.3e-30 137.9 97 72.2
Cre11.g479600 Chlamydomonas reinhardtii HOM05D005743 ORTHO05D007031 3.1e-27 127.5 799 22.7
Glyma.02G017550 Glycine max HOM05D005743 ORTHO05D007031 7.7e-26 122.9 83 74.7
SEGI_31813 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 4.3e-21 107.1 98 55.1
SEGI_40223 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 6.9e-19 99.8 98 51.0
ATR0706G260 Amborella trichopoda HOM05D005743 ORTHO05D007031 4.2e-16 90.5 51 88.2
PRCOL_00000753 Prasinoderma coloniale HOM05D018879 ORTHO05D018932 2.0e-10 71.6 184 29.3
Medtr7g112660 Medicago truncatula HOM05D005743 ORTHO05D007031 1.9e-08 65.1 52 69.2
MCO03G398 Micromonas commoda HOM05D018879 ORTHO05D018932 5.5e-08 63.5 376 24.2
Medtr3g062620 Medicago truncatula HOM05D005743 ORTHO05D007031 3.0e-06 57.8 40 75.0
MCO14G031 Micromonas commoda HOM05D018879 ORTHO05D018932 5.2e-06 57.0 118 35.6
MCO14G228 Micromonas commoda HOM05D018879 ORTHO05D018932 5.2e-06 57.0 118 35.6
PRCOL_00000097 Prasinoderma coloniale HOM05D018879 ORTHO05D018932 6.7e-06 56.6 157 28.0


User provided reference genes

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