Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G1366 Cannabis sativa HOM05D008636 ORTHO05D000137 2.8e-111 405.2 197 100.0
CANSAT35G1851 Cannabis sativa HOM05D008636 ORTHO05D000137 6.6e-108 394.0 195 97.9
CANSAT21G0896 Cannabis sativa HOM05D008636 ORTHO05D000137 2.1e-106 389.0 195 96.9
CANSAT56G1233 Cannabis sativa HOM05D008636 ORTHO05D000137 5.7e-104 380.9 196 95.4
CANSAT01G0053 Cannabis sativa HOM05D008636 ORTHO05D000137 1.2e-90 336.7 164 98.2
CANSAT25G3489 Cannabis sativa HOM05D008636 ORTHO05D000137 8.3e-87 323.9 195 84.1
CANSAT35G0078 Cannabis sativa HOM05D008636 ORTHO05D000137 6.6e-84 314.3 156 96.2
CANSAT56G3453 Cannabis sativa HOM05D008636 ORTHO05D000137 4.7e-82 308.1 195 81.0
CANSAT54G0860 Cannabis sativa HOM05D008636 ORTHO05D000137 1.4e-78 296.6 155 92.3
CANSAT11G0656 Cannabis sativa HOM05D008636 ORTHO05D000137 4.1e-78 295.0 194 76.3
CANSAT11G1535 Cannabis sativa HOM05D008636 ORTHO05D000137 1.5e-75 286.6 149 96.0
CANSAT11G0828 Cannabis sativa HOM05D008636 ORTHO05D000137 4.7e-74 281.6 153 90.2
CANSAT64G2498 Cannabis sativa HOM05D008636 ORTHO05D000137 1.1e-73 280.4 137 98.5
CANSAT54G0660 Cannabis sativa HOM05D008636 ORTHO05D000137 1.5e-67 260.0 122 99.2
CANSAT01G2792 Cannabis sativa HOM05D008636 ORTHO05D000137 4.8e-66 255.0 122 97.5
CANSAT54G2329 Cannabis sativa HOM05D008636 ORTHO05D000137 4.8e-66 255.0 122 97.5
CANSAT11G1407 Cannabis sativa HOM05D008636 ORTHO05D000137 8.1e-66 254.2 131 96.9
CANSAT56G0417 Cannabis sativa HOM05D008636 ORTHO05D000137 8.1e-66 254.2 131 96.2
CANSAT25G3069 Cannabis sativa HOM05D008636 ORTHO05D000482 8.4e-63 244.2 132 93.9
CANSAT80G0150 Cannabis sativa HOM05D002262 ORTHO05D000482 1.3e-60 236.9 135 89.6
CANSAT25G0646 Cannabis sativa HOM05D008636 ORTHO05D000137 5.4e-54 214.9 102 98.0
CANSAT80G1627 Cannabis sativa HOM05D008636 ORTHO05D000137 5.4e-54 214.9 102 98.0
CANSAT78G2078 Cannabis sativa HOM05D008636 ORTHO05D000482 2.6e-48 196.1 161 70.2
CANSAT25G0487 Cannabis sativa HOM05D008721 ORTHO05D000137 8.7e-36 154.5 165 52.1
CANSAT80G0449 Cannabis sativa HOM05D008721 ORTHO05D000137 8.7e-36 154.5 165 52.1
CANSAT21G0858 Cannabis sativa HOM05D008721 ORTHO05D000137 2.5e-35 152.9 165 51.5
CANSAT25G3227 Cannabis sativa HOM05D008721 ORTHO05D000137 4.3e-35 152.1 166 51.2
CANSAT80G1051 Cannabis sativa HOM05D008721 ORTHO05D000137 3.7e-34 149.1 151 55.0
CANSAT11G0393 Cannabis sativa HOM05D008721 ORTHO05D000137 4.1e-33 145.6 151 54.3
CANSAT01G3033 Cannabis sativa HOM05D008721 ORTHO05D000137 1.5e-32 143.7 143 55.2
CANSAT54G1171 Cannabis sativa HOM05D008721 ORTHO05D000482 2.9e-31 139.4 142 55.6
CANSAT11G1365 Cannabis sativa HOM05D008636 ORTHO05D000137 8.8e-28 127.9 105 59.0
CANSAT54G0513 Cannabis sativa HOM05D008636 ORTHO05D000137 2.6e-19 99.8 164 42.7
CANSAT56G0181 Cannabis sativa HOM05D008897 ORTHO05D014793 8.2e-18 94.7 199 35.7
CANSAT80G0664 Cannabis sativa HOM05D008897 ORTHO05D000137 8.2e-18 94.7 211 34.6
CANSAT21G0297 Cannabis sativa HOM05D008897 ORTHO05D014793 1.8e-17 93.6 159 38.4
CANSAT21G1153 Cannabis sativa HOM05D008897 ORTHO05D000137 1.8e-17 93.6 159 38.4
CANSAT56G3280 Cannabis sativa HOM05D008897 ORTHO05D000137 1.8e-17 93.6 159 38.4
CANSAT54G0249 Cannabis sativa HOM05D008897 ORTHO05D000137 4.1e-17 92.4 151 39.1
CANSAT21G0433 Cannabis sativa HOM05D008897 ORTHO05D000016 9.1e-17 91.3 159 37.7
CANSAT78G1896 Cannabis sativa HOM05D008897 ORTHO05D000137 1.5e-16 90.5 151 38.4
DCAR_010080 Daucus carota HOM05D000679 ORTHO05D000137 1.5e-16 90.5 195 32.3
DCAR_018395 Daucus carota HOM05D000679 ORTHO05D000137 1.0e-15 87.8 136 39.7
CANSAT80G2560 Cannabis sativa HOM05D008897 ORTHO05D000137 2.9e-15 86.3 155 37.4
Nitab4.5_0007904g0010 Nicotiana tabacum HOM05D008636 ORTHO05D000137 2.9e-15 86.3 151 35.8
CANSAT64G1718 Cannabis sativa HOM05D017160 ORTHO05D000137 6.5e-15 85.1 185 30.3
Nitab4.5_0005355g0020 Nicotiana tabacum HOM05D000679 ORTHO05D000137 3.2e-14 82.8 138 37.7
CANSAT25G0378 Cannabis sativa HOM05D000679 ORTHO05D000137 4.2e-14 82.4 139 33.1
CANSAT80G0147 Cannabis sativa HOM05D017160 ORTHO05D000137 4.2e-14 82.4 170 31.2
CANSAT78G2148 Cannabis sativa HOM05D008897 ORTHO05D000137 1.2e-13 80.9 114 40.4
CANSAT54G1268 Cannabis sativa HOM05D008897 ORTHO05D000137 4.7e-13 79.0 101 42.6
CANSAT35G1468 Cannabis sativa HOM05D008897 ORTHO05D000137 1.4e-12 77.4 163 32.5
CANSAT54G2653 Cannabis sativa HOM05D000679 ORTHO05D000137 6.7e-12 75.1 144 34.0
CANSAT56G0862 Cannabis sativa HOM05D000679 ORTHO05D000137 6.7e-12 75.1 144 34.0
CANSAT54G2098 Cannabis sativa HOM05D000679 ORTHO05D000137 8.8e-12 74.7 144 34.0
Sopen00g004650 Solanum pennellii HOM05D000679 ORTHO05D000137 2.0e-11 73.6 79 46.8
Sopen10g028350 Solanum pennellii HOM05D000679 ORTHO05D000137 2.0e-11 73.6 171 33.3
CANSAT54G1761 Cannabis sativa HOM05D008721 ORTHO05D000137 2.6e-11 73.2 106 46.2
Sopen07g017260 Solanum pennellii HOM05D000679 ORTHO05D000137 2.6e-11 73.2 73 50.7
Sopen06g029680 Solanum pennellii HOM05D000679 ORTHO05D000137 4.4e-11 72.4 171 32.7
CANSAT56G1481 Cannabis sativa HOM05D009472 ORTHO05D000482 9.7e-11 71.2 144 35.4
Nitab4.5_0013951g0010 Nicotiana tabacum HOM05D000679 ORTHO05D000137 1.7e-10 70.5 76 39.5
Sopen12g021510 Solanum pennellii HOM05D000679 ORTHO05D000137 2.8e-10 69.7 73 47.9
Sopen01g014180 Solanum pennellii HOM05D000679 ORTHO05D000137 3.7e-10 69.3 190 33.7
Nitab4.5_0005654g0010 Nicotiana tabacum HOM05D000679 ORTHO05D000137 6.3e-10 68.6 76 40.8
Sopen05g027730 Solanum pennellii HOM05D000679 ORTHO05D000137 6.3e-10 68.6 73 47.9
Nitab4.5_0001425g0040 Nicotiana tabacum HOM05D002262 ORTHO05D000482 8.2e-10 68.2 140 33.6
Sopen12g024090 Solanum pennellii HOM05D000679 ORTHO05D000137 8.2e-10 68.2 187 32.1
CANSAT50G0005 Cannabis sativa HOM05D009472 ORTHO05D000137 1.1e-09 67.8 177 32.8
CANSAT54G0650 Cannabis sativa HOM05D008721 ORTHO05D000482 1.1e-09 67.8 99 44.4
Nitab4.5_0002373g0140 Nicotiana tabacum HOM05D000679 ORTHO05D000137 1.1e-09 67.8 223 27.4
CANSAT54G2383 Cannabis sativa HOM05D009472 ORTHO05D000137 1.4e-09 67.4 182 33.0
CANSAT54G2039 Cannabis sativa HOM05D009472 ORTHO05D000137 1.8e-09 67.0 187 32.6
Nitab4.5_0002414g0070 Nicotiana tabacum HOM05D002262 ORTHO05D000137 2.4e-09 66.6 161 32.3
CANSAT80G1813 Cannabis sativa HOM05D009472 ORTHO05D000137 3.1e-09 66.2 177 32.2
Nitab4.5_0004308g0010 Nicotiana tabacum HOM05D005877 ORTHO05D010356 3.1e-09 66.2 172 31.4
Sopen12g022620 Solanum pennellii HOM05D010988 ORTHO05D000137 3.1e-09 66.2 148 32.4
Sopen12g024080 Solanum pennellii HOM05D000679 ORTHO05D000137 4.1e-09 65.9 59 52.5
ATR0441G001 Amborella trichopoda HOM05D008721 ORTHO05D000137 5.3e-09 65.5 165 32.1
CANSAT25G1620 Cannabis sativa HOM05D008721 ORTHO05D000482 5.3e-09 65.5 99 42.4
Sopen11g022980 Solanum pennellii HOM05D000679 ORTHO05D000137 5.3e-09 65.5 59 52.5
PGSC0003DMG400043182 Solanum tuberosum HOM05D000679 ORTHO05D000137 5.3e-09 65.5 145 31.0
CAN.G1862.3 Capsicum annuum HOM05D000361 ORTHO05D000137 7.0e-09 65.1 171 26.9
Nitab4.5_0006179g0010 Nicotiana tabacum HOM05D000679 ORTHO05D000137 7.0e-09 65.1 144 29.2
CANSAT35G0617 Cannabis sativa HOM05D009472 ORTHO05D000137 9.1e-09 64.7 172 32.6
Nitab4.5_0019772g0010 Nicotiana tabacum HOM05D005877 ORTHO05D010356 9.1e-09 64.7 171 29.8
Sopen09g026450 Solanum pennellii HOM05D000679 ORTHO05D000137 9.1e-09 64.7 186 30.1
Sopen12g007430 Solanum pennellii HOM05D000679 ORTHO05D000137 9.1e-09 64.7 186 30.1
Sopen06g003040 Solanum pennellii HOM05D000679 ORTHO05D000137 2.0e-08 63.5 158 32.3
CANSAT25G1234 Cannabis sativa HOM05D023333 ORTHO05D000137 2.6e-08 63.2 141 32.6
Nitab4.5_0008647g0030 Nicotiana tabacum HOM05D000679 ORTHO05D000482 2.6e-08 63.2 81 35.8
SGA_v2.0_scaffold276G46661 Striga asiatica HOM05D000679 ORTHO05D000137 2.6e-08 63.2 98 36.7
Nitab4.5_0008752g0040 Nicotiana tabacum HOM05D000679 ORTHO05D000482 4.5e-08 62.4 76 36.8
CANSAT80G2652 Cannabis sativa HOM05D023333 ORTHO05D000137 5.9e-08 62.0 141 31.9
DCAR_024959 Daucus carota HOM05D000679 ORTHO05D000137 7.7e-08 61.6 105 36.2
Nitab4.5_0004917g0010 Nicotiana tabacum HOM05D000679 ORTHO05D000137 7.7e-08 61.6 186 29.0
Nitab4.5_0006628g0010 Nicotiana tabacum HOM05D000679 ORTHO05D000137 7.7e-08 61.6 91 34.1
Nitab4.5_0001889g0010 Nicotiana tabacum HOM05D002262 ORTHO05D000137 1.0e-07 61.2 120 34.2
Solyc11g042805.1 Solanum lycopersicum HOM05D009268 ORTHO05D000137 1.0e-07 61.2 87 41.4
CANSAT56G1504 Cannabis sativa HOM05D000679 ORTHO05D000137 1.3e-07 60.8 36 72.2
CAN.G1344.11 Capsicum annuum HOM05D000679 ORTHO05D000482 1.3e-07 60.8 67 40.3
CAN.G453.11 Capsicum annuum HOM05D000679 ORTHO05D000137 1.3e-07 60.8 77 35.1
Solyc09g150106.1 Solanum lycopersicum HOM05D009268 ORTHO05D011733 1.3e-07 60.8 85 40.0
SGA_v2.0_scaffold59G20643 Striga asiatica HOM05D000679 ORTHO05D000137 1.3e-07 60.8 98 35.7
Nitab4.5_0000404g0150 Nicotiana tabacum HOM05D002262 ORTHO05D000482 1.7e-07 60.5 193 28.5
Nitab4.5_0002879g0090 Nicotiana tabacum HOM05D000679 ORTHO05D000137 1.7e-07 60.5 158 29.7
PGSC0003DMG400037565 Solanum tuberosum HOM05D000679 ORTHO05D000137 1.7e-07 60.5 77 36.4
CANSAT54G1484 Cannabis sativa HOM05D000679 ORTHO05D000137 2.2e-07 60.1 130 29.2
CAN.G1245.5 Capsicum annuum HOM05D000679 ORTHO05D000137 2.2e-07 60.1 162 29.6
Nitab4.5_0000425g0130 Nicotiana tabacum HOM05D000679 ORTHO05D000137 2.2e-07 60.1 58 41.4
Solyc07g041820.3 Solanum lycopersicum HOM05D010988 ORTHO05D000137 2.2e-07 60.1 78 37.2
Sopen05g031060 Solanum pennellii HOM05D009268 ORTHO05D011733 2.2e-07 60.1 85 38.8
Sopen06g017270 Solanum pennellii HOM05D009268 ORTHO05D011733 2.2e-07 60.1 85 38.8
Sopen09g021100 Solanum pennellii HOM05D009268 ORTHO05D011733 2.2e-07 60.1 85 38.8
Nitab4.5_0000074g0140 Nicotiana tabacum HOM05D002262 ORTHO05D000137 2.9e-07 59.7 55 52.7
Nitab4.5_0000632g0110 Nicotiana tabacum HOM05D000679 ORTHO05D000137 2.9e-07 59.7 58 48.3
Sopen01g020370 Solanum pennellii HOM05D009268 ORTHO05D011733 2.9e-07 59.7 85 38.8
Sopen01g030890 Solanum pennellii HOM05D000679 ORTHO05D000137 2.9e-07 59.7 67 46.3
Sopen05g027230 Solanum pennellii HOM05D000002 ORTHO05D000001 2.9e-07 59.7 65 38.5
CANSAT35G0046 Cannabis sativa HOM05D000679 ORTHO05D000137 3.8e-07 59.3 36 69.4
Nitab4.5_0000902g0220 Nicotiana tabacum HOM05D002262 ORTHO05D000137 3.8e-07 59.3 151 34.4
Nitab4.5_0011972g0010 Nicotiana tabacum HOM05D008108 ORTHO05D000137 3.8e-07 59.3 177 28.8
Sopen07g004240 Solanum pennellii HOM05D000635 ORTHO05D000488 3.8e-07 59.3 90 40.0
PGSC0003DMG400008245 Solanum tuberosum HOM05D011278 ORTHO05D014267 3.8e-07 59.3 112 34.8
Nitab4.5_0000347g0110 Nicotiana tabacum HOM05D000679 ORTHO05D000137 5.0e-07 58.9 62 43.5
Nitab4.5_0000725g0160 Nicotiana tabacum HOM05D000679 ORTHO05D000137 5.0e-07 58.9 53 43.4
Nitab4.5_0005924g0030 Nicotiana tabacum HOM05D005877 ORTHO05D010356 5.0e-07 58.9 60 43.3
Solyc08g066625.1 Solanum lycopersicum HOM05D009268 ORTHO05D011733 5.0e-07 58.9 85 38.8
Nitab4.5_0001300g0020 Nicotiana tabacum HOM05D000679 ORTHO05D000137 6.5e-07 58.5 53 45.3
SGA_v2.0_scaffold2G00971 Striga asiatica HOM05D000679 ORTHO05D000137 6.5e-07 58.5 105 36.2
SGA_v2.0_scaffold1G00046 Striga asiatica HOM05D000679 ORTHO05D000137 8.5e-07 58.2 100 39.0
Nitab4.5_0023553g0010 Nicotiana tabacum HOM05D005877 ORTHO05D010356 1.1e-06 57.8 66 43.9
Sopen09g004400 Solanum pennellii HOM05D009268 ORTHO05D011733 1.1e-06 57.8 46 52.2
Sopen12g014500 Solanum pennellii HOM05D000002 ORTHO05D000001 1.1e-06 57.8 67 43.3
CANSAT11G1718 Cannabis sativa HOM05D009472 ORTHO05D000137 1.5e-06 57.4 123 35.0
CAN.G639.25 Capsicum annuum HOM05D000679 ORTHO05D000137 1.5e-06 57.4 82 34.1
SGA_v2.0_scaffold240G44055 Striga asiatica HOM05D000679 ORTHO05D000137 1.5e-06 57.4 100 40.0
CAN.G53.24 Capsicum annuum HOM05D000679 ORTHO05D000137 1.9e-06 57.0 195 26.2
Nitab4.5_0000034g0070 Nicotiana tabacum HOM05D002262 ORTHO05D000137 1.9e-06 57.0 88 44.3
Nitab4.5_0000125g0050 Nicotiana tabacum HOM05D002262 ORTHO05D000137 2.5e-06 56.6 55 49.1
Nitab4.5_0000688g0110 Nicotiana tabacum HOM05D006812 ORTHO05D000482 2.5e-06 56.6 167 28.7
Nitab4.5_0004282g0010 Nicotiana tabacum HOM05D000679 ORTHO05D000137 2.5e-06 56.6 62 40.3
Nitab4.5_0010618g0020 Nicotiana tabacum HOM05D000679 ORTHO05D000137 2.5e-06 56.6 203 25.1
Oeu055636.1 Olea europaea HOM05D002749 ORTHO05D000708 2.5e-06 56.6 156 27.6
CAN.G1273.10 Capsicum annuum HOM05D000679 ORTHO05D000137 3.2e-06 56.2 53 47.2
Nitab4.5_0009434g0020 Nicotiana tabacum HOM05D008108 ORTHO05D011004 3.2e-06 56.2 96 34.4
Sopen09g020240 Solanum pennellii HOM05D010988 ORTHO05D000137 3.2e-06 56.2 152 28.9
CAN.G219.52 Capsicum annuum HOM05D000679 ORTHO05D000137 4.2e-06 55.8 50 46.0
DCAR_029854 Daucus carota HOM05D002749 ORTHO05D000137 4.2e-06 55.8 55 40.0
Nitab4.5_0001109g0050 Nicotiana tabacum HOM05D008108 ORTHO05D011004 5.5e-06 55.5 96 31.2
Oeu014738.1 Olea europaea HOM05D002749 ORTHO05D000708 5.5e-06 55.5 156 27.6
Sopen00g005360 Solanum pennellii HOM05D000541 ORTHO05D000137 5.5e-06 55.5 139 30.9
CANSAT80G2627 Cannabis sativa HOM05D009472 ORTHO05D000137 7.2e-06 55.1 158 29.7
CAN.G211.8 Capsicum annuum HOM05D000679 ORTHO05D000137 9.4e-06 54.7 46 50.0
Nitab4.5_0000864g0180 Nicotiana tabacum HOM05D002262 ORTHO05D000137 9.4e-06 54.7 44 54.5
SGA_v2.0_scaffold76G25157 Striga asiatica HOM05D002262 ORTHO05D000137 9.4e-06 54.7 58 46.6


User provided reference genes

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