Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G1322 Cannabis sativa HOM05D006215 ORTHO05D007719 6.8e-116 420.6 205 100.0
CANSAT80G2378 Cannabis sativa HOM05D006215 ORTHO05D007719 2.3e-87 325.9 210 77.6
Potri.002G018100 Populus trichocarpa HOM05D006215 ORTHO05D007719 9.3e-81 303.9 201 74.6
Prupe.4G165400 Prunus persica HOM05D006215 ORTHO05D007719 5.1e-79 298.1 197 72.6
FAN11G1504 Fragaria x ananassa HOM05D006215 ORTHO05D007719 4.3e-78 295.0 188 73.4
QL02p012562 Quercus lobata HOM05D006215 ORTHO05D007719 5.6e-78 294.7 194 74.2
Cfa013993 Carpinus fangiana HOM05D006215 ORTHO05D007719 1.6e-77 293.1 198 72.2
RcHm_v2.0_Chr5g0031011 Rosa chinensis HOM05D006215 ORTHO05D007719 2.8e-77 292.4 188 72.9
FAN25G2739 Fragaria x ananassa HOM05D006215 ORTHO05D007719 3.1e-76 288.9 185 73.0
CSS0039588 Camellia sinensis var. sinensis HOM05D006215 ORTHO05D007719 4.0e-76 288.5 176 78.4
Thecc.08G049400 Theobroma cacao HOM05D006215 ORTHO05D007719 4.0e-76 288.5 179 74.9
MD03G1242500 Malus domestica HOM05D006215 ORTHO05D007719 5.3e-76 288.1 188 73.9
Ciclev10002478m.g Citrus clementina HOM05D006215 ORTHO05D007719 6.9e-76 287.7 182 76.4
CSS0005676 Camellia sinensis var. sinensis HOM05D006215 ORTHO05D007719 1.2e-75 287.0 176 77.8
DCAR_009503 Daucus carota HOM05D006215 ORTHO05D007719 1.2e-75 287.0 179 77.1
Manes.18G010300 Manihot esculenta HOM05D006215 ORTHO05D007719 1.5e-75 286.6 179 76.5
CsaV3_3G046060 Cucumis sativus L. HOM05D006215 ORTHO05D007719 2.0e-75 286.2 178 74.2
vmacro21863 Vaccinium macrocarpon HOM05D006215 ORTHO05D007719 4.5e-75 285.0 210 67.6
Lj1g0006385 Lotus japonicus HOM05D006215 ORTHO05D007719 5.8e-75 284.6 177 75.7
Lsat_1_v5_gn_8_29640 Lactuca sativa HOM05D006215 ORTHO05D007719 7.6e-75 284.3 192 69.8
VMungo1215G3215 Vigna mungo HOM05D006215 ORTHO05D007719 9.9e-75 283.9 179 74.9
Phvul.009G018900 Phaseolus vulgaris HOM05D006215 ORTHO05D007719 1.3e-74 283.5 179 74.9
arahy.Tifrunner.gnm1.ann1.89BLSN Arachis hypogaea HOM05D006215 ORTHO05D007719 2.9e-74 282.3 174 77.6
Sabra02G0014400 Salix brachista HOM05D006215 ORTHO05D007719 2.9e-74 282.3 233 63.9
Duzib041G0142 Durio zibethinus HOM05D006215 ORTHO05D007719 3.8e-74 282.0 201 66.2
Rhsim06G0017400 Rhododendron simsii HOM05D006215 ORTHO05D007719 3.8e-74 282.0 180 75.0
Nn5g30812 Nelumbo nucifera HOM05D006215 ORTHO05D007719 6.4e-74 281.2 174 74.7
Solyc04g081850.4 Solanum lycopersicum HOM05D006215 ORTHO05D007719 8.4e-74 280.8 176 73.3
GSVIVG01009974001 Vitis vinifera HOM05D006215 ORTHO05D009429 1.1e-73 280.4 175 76.0
Dinv31883 Davidia involucrata HOM05D006215 ORTHO05D007719 1.4e-73 280.0 218 65.6
Cpa.g.sc26.282 Carica papaya HOM05D006215 ORTHO05D007719 1.9e-73 279.6 201 69.2
HanXRQChr13g0386921 Helianthus annuus HOM05D006215 ORTHO05D007719 1.9e-73 279.6 197 69.0
Gohir.D01G096200 Gossypium hirsutum HOM05D006215 ORTHO05D007719 3.2e-73 278.9 202 67.3
Lalb_Chr23g0266051 Lupinus albus HOM05D006215 ORTHO05D007719 3.2e-73 278.9 178 74.7
Sopen04g035480 Solanum pennellii HOM05D006215 ORTHO05D007719 5.5e-73 278.1 176 72.7
Sed0008956 Sechium edule HOM05D006215 ORTHO05D007719 9.3e-73 277.3 174 72.4
Glyma.06G021900 Glycine max HOM05D006215 ORTHO05D007719 1.2e-72 276.9 201 69.2
Medtr3g114470 Medicago truncatula HOM05D006215 ORTHO05D007719 2.1e-72 276.2 192 67.2
Gorai.002G121700 Gossypium raimondii HOM05D006215 ORTHO05D007719 2.7e-72 275.8 202 66.3
COL.COLO4_26102 Corchorus olitorius HOM05D006215 ORTHO05D007719 3.5e-72 275.4 177 71.2
Gohir.A01G109400 Gossypium hirsutum HOM05D006215 ORTHO05D007719 4.6e-72 275.0 202 66.8
PGSC0003DMG400009949 Solanum tuberosum HOM05D006215 ORTHO05D007719 4.6e-72 275.0 176 72.2
Glyma.04G021700 Glycine max HOM05D006215 ORTHO05D007719 6.0e-72 274.6 199 67.3
Psat5g012560 Pisum sativum HOM05D006215 ORTHO05D007719 1.0e-71 273.9 178 72.5
Atru.chr13.240 Acer truncatum HOM05D006215 ORTHO05D007719 1.3e-71 273.5 185 71.9
Lj4C18G8 Lonicera japonica HOM05D000114 ORTHO05D009837 2.3e-71 272.7 178 70.2
MSTRG.1158 Avicennia marina HOM05D006215 ORTHO05D007719 3.9e-71 271.9 172 73.8
Ca_15473_v3 Cicer arietinum L. HOM05D006215 ORTHO05D007719 4.3e-70 268.5 197 65.5
TWI12G0400 Tripterygium wilfordii HOM05D006215 ORTHO05D007719 4.3e-70 268.5 177 72.9
BcaB02g07052 Brassica carinata HOM05D006215 ORTHO05D007719 1.6e-69 266.5 193 66.8
CAN.G311.58 Capsicum annuum HOM05D006215 ORTHO05D007719 1.6e-69 266.5 184 69.6
ECA233G5922 Erigeron canadensis HOM05D000114 ORTHO05D000075 1.6e-69 266.5 201 64.7
EL10Ac1g02129 Beta vulgaris HOM05D006215 ORTHO05D007719 6.2e-69 264.6 182 67.0
A07p41490 Brassica napus HOM05D006215 ORTHO05D007719 6.2e-69 264.6 202 65.3
BraA07t31681Z Brassica rapa HOM05D006215 ORTHO05D007719 6.2e-69 264.6 202 65.3
BcaB05g24966 Brassica carinata HOM05D006215 ORTHO05D007719 1.1e-68 263.8 203 65.0
Migut.C00887 Erythranthe guttata HOM05D006215 ORTHO05D007719 1.8e-68 263.1 169 72.8
SGA_v2.0_scaffold292G47375 Striga asiatica HOM05D006215 ORTHO05D007719 1.8e-68 263.1 172 72.7
Aqoxy5G01831 Aquilegia oxysepala HOM05D006215 ORTHO05D007719 2.4e-68 262.7 174 70.1
Thhalv10019087m.g Eutrema salsugineum HOM05D006215 ORTHO05D007719 4.0e-68 261.9 174 71.8
C06p32240 Brassica napus HOM05D006215 ORTHO05D007719 5.3e-68 261.5 180 70.6
BolC6t38347H Brassica oleracea HOM05D006215 ORTHO05D007719 5.3e-68 261.5 180 70.6
A07p28630 Brassica napus HOM05D006215 ORTHO05D007719 9.0e-68 260.8 211 63.5
BraA07t30504Z Brassica rapa HOM05D006215 ORTHO05D007719 9.0e-68 260.8 211 63.5
BcaC08g45544 Brassica carinata HOM05D006215 ORTHO05D007719 1.2e-67 260.4 204 64.7
HPP92_025438 Vanilla planifolia HOM05D006215 ORTHO05D007719 1.5e-67 260.0 176 67.6
MELO3C003734.2 Cucumis melo HOM05D006215 ORTHO05D007719 2.0e-67 259.6 161 75.8
AT1G75980 Arabidopsis thaliana HOM05D006215 ORTHO05D007719 2.6e-67 259.2 174 71.3
AL2G36000 Arabidopsis lyrata HOM05D006215 ORTHO05D007719 5.8e-67 258.1 171 73.1
PSO339G6481 Papaver somniferum HOM05D006215 ORTHO05D007719 5.8e-67 258.1 209 62.2
C06p49900 Brassica napus HOM05D006215 ORTHO05D007719 1.3e-66 256.9 173 69.9
Carub.0002s2287 Capsella rubella HOM05D006215 ORTHO05D007719 2.2e-66 256.1 174 70.7
PSO384G0480 Papaver somniferum HOM05D006215 ORTHO05D007719 3.8e-66 255.4 209 61.7
BcaC08g47309 Brassica carinata HOM05D006215 ORTHO05D007719 1.1e-65 253.8 173 69.4
Sp5g31100 Schrenkiella parvula HOM05D006215 ORTHO05D007719 2.5e-65 252.7 173 69.4
THA.LOC104811433 Tarenaya hassleriana HOM05D006215 ORTHO05D007719 4.2e-65 251.9 197 65.5
CARHR069510 Cardamine hirsuta HOM05D006215 ORTHO05D007719 5.5e-65 251.5 187 64.2
Oeu033622.1 Olea europaea HOM05D006215 ORTHO05D007719 1.2e-64 250.4 177 67.2
Hund01696 Selenicereus undatus HOM05D006215 ORTHO05D007719 1.2e-64 250.4 188 62.2
Zm00001eb209250 Zea mays HOM05D006215 ORTHO05D007719 1.2e-64 250.4 188 61.7
AUR62013912 Chenopodium quinoa HOM05D006215 ORTHO05D007719 6.0e-64 248.1 171 68.4
SalBow7G2905 Salvia bowleyana HOM05D006215 ORTHO05D007719 3.0e-63 245.7 212 58.0
ClCG05G015490 Citrullus lanatus HOM05D006215 ORTHO05D007719 2.5e-62 242.7 178 66.9
Rhsim06G0015300 Rhododendron simsii HOM05D006215 ORTHO05D007719 4.8e-61 238.4 186 65.1
unitig_32.g11202 Utricularia gibba HOM05D006215 ORTHO05D007719 1.1e-60 237.3 201 58.2
CDE04G3084 Ceratophyllum demersum HOM05D006215 ORTHO05D007719 6.9e-60 234.6 165 67.9
CiPaw.07G144900 Carya illinoinensis HOM05D006215 ORTHO05D007719 1.5e-59 233.4 147 76.2
FvH4_3g18360 Fragaria vesca HOM05D006215 ORTHO05D007719 2.2e-58 229.6 156 69.2
Os02g0120400 Oryza sativa ssp. japonica HOM05D006215 ORTHO05D007719 1.4e-57 226.9 141 73.8
Nitab4.5_0004361g0040 Nicotiana tabacum HOM05D006215 ORTHO05D007719 1.9e-57 226.5 163 68.7
Actinidia15453 Actinidia chinensis HOM05D006215 ORTHO05D007719 4.6e-56 221.9 178 61.8
Eucgr.F03725 Eucalyptus grandis HOM05D006215 ORTHO05D007719 7.9e-56 221.1 149 71.1
TPR.G38171 Trifolium pratense HOM05D006215 ORTHO05D007719 2.8e-53 212.6 131 77.1
TAR625G0502 Trochodendron aralioides HOM05D006215 ORTHO05D007719 4.1e-52 208.8 145 71.0
arahy.Tifrunner.gnm1.ann1.SEC0EX Arachis hypogaea HOM05D006215 ORTHO05D007719 7.7e-51 204.5 190 56.3
PGR083G2507 Punica granatum HOM05D006215 ORTHO05D007719 1.3e-50 203.8 196 58.2
Peaxi162Scf00860g00212 Petunia axillaris HOM05D006215 ORTHO05D007719 1.7e-50 203.4 178 57.9
ATR1088G027 Amborella trichopoda HOM05D006215 ORTHO05D007719 2.9e-50 202.6 151 66.9
AUR62018279 Chenopodium quinoa HOM05D006215 ORTHO05D007719 6.5e-50 201.4 169 58.6
Mapoly0001s0313 Marchantia polymorpha HOM05D006215 ORTHO05D007719 3.0e-47 192.6 169 53.3
Pp3c20_3890 Physcomitrium patens HOM05D006215 ORTHO05D007719 9.7e-46 187.6 167 53.3
FAN21G0515 Fragaria x ananassa HOM05D006215 ORTHO05D007719 3.7e-45 185.7 185 50.8
Duzib093G1443 Durio zibethinus HOM05D006215 ORTHO05D007719 1.8e-44 183.3 128 70.3
Actinidia17011 Actinidia chinensis HOM05D006215 ORTHO05D007719 1.5e-43 180.3 161 59.0
Aa31LG4G6130 Aethionema arabicum HOM05D006215 ORTHO05D007719 4.5e-43 178.7 179 52.5
SMO367G0408 Selaginella moellendorffii HOM05D006215 ORTHO05D007719 1.9e-41 173.3 179 46.4
Sc15g0004750 Simmondsia chinensis HOM05D006215 ORTHO05D007719 1.6e-40 170.2 139 58.3
CANSAT25G3730 Cannabis sativa HOM05D006215 ORTHO05D007719 2.1e-40 169.9 113 75.2
Cc10_g01280 Coffea canephora HOM05D006215 ORTHO05D007719 6.3e-37 158.3 101 70.3
SHI08014 Sapria himalayana HOM05D006215 ORTHO05D007719 3.2e-33 146.0 102 64.7
BolC6t40028H Brassica oleracea HOM05D006215 ORTHO05D007719 5.5e-33 145.2 123 61.0
Haze_22683 Corylus avellana HOM05D006215 ORTHO05D007719 9.4e-33 144.4 127 60.6
Ah.06g187190 Amaranthus hybridus HOM05D006215 ORTHO05D007719 2.3e-31 139.8 131 55.7
Eucgr.F03727 Eucalyptus grandis HOM05D006215 ORTHO05D007719 8.8e-31 137.9 88 72.7
CBR_g54848 Chara braunii HOM05D006215 ORTHO05D007719 4.5e-27 125.6 126 53.2
SEGI_18034 Sequoiadendron giganteum HOM05D006215 ORTHO05D007719 6.5e-26 121.7 93 58.1
Cc10_g01290 Coffea canephora HOM05D006215 ORTHO05D007719 1.5e-25 120.6 86 65.1
Glyma.02G160800 Glycine max HOM05D006215 ORTHO05D007719 5.2e-23 112.1 63 77.8
AagrBONN_evm.TU.Sc2ySwM_117.1002 Anthoceros agrestis HOM05D006215 ORTHO05D007719 1.3e-21 107.5 113 48.7
Carub.0005s0222 Capsella rubella HOM05D006215 ORTHO05D007719 2.0e-19 100.1 70 72.9
Medtr6g083100 Medicago truncatula HOM05D006215 ORTHO05D007719 1.3e-18 97.4 141 43.3
BcaC03g15638 Brassica carinata HOM05D006215 ORTHO05D007719 9.5e-17 91.3 99 53.5
C02p33520 Brassica napus HOM05D006215 ORTHO05D007719 3.4e-14 82.8 69 65.2
Lsat_1_v5_gn_4_111221 Lactuca sativa HOM05D006215 ORTHO05D007719 1.7e-13 80.5 54 72.2
BolC2t09353H Brassica oleracea HOM05D006215 ORTHO05D007719 1.8e-12 77.0 101 46.5
MCO13G478 Micromonas commoda HOM05D006215 ORTHO05D007719 1.8e-12 77.0 111 35.1
TPR.G38152 Trifolium pratense HOM05D006215 ORTHO05D007719 9.5e-09 64.7 40 65.0
A02p20380 Brassica napus HOM05D006215 ORTHO05D007719 3.0e-07 59.7 57 56.1
MD11G1262900 Malus domestica HOM05D006215 ORTHO05D007719 2.6e-06 56.6 39 74.4


User provided reference genes

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