Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 2.9e-140 501.9 255 100.0
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 5.2e-49 198.7 288 46.5
Cfa014094 Carpinus fangiana HOM05D003937 ORTHO05D004583 2.5e-43 179.9 286 41.3
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 2.6e-40 169.9 280 44.3
QL02p014402 Quercus lobata HOM05D003937 ORTHO05D004583 9.9e-40 167.9 290 41.4
Haze_22798 Corylus avellana HOM05D003937 ORTHO05D004583 1.3e-39 167.5 266 42.5
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 1.7e-39 167.2 290 42.8
Actinidia37917 Actinidia chinensis HOM05D003937 ORTHO05D004583 5.4e-38 162.2 273 42.1
FvH4_5g25250 Fragaria vesca HOM05D003937 ORTHO05D004583 2.1e-37 160.2 286 38.8
Haze_22797 Corylus avellana HOM05D003937 ORTHO05D004583 1.8e-33 147.1 266 40.2
FAN18G0752 Fragaria x ananassa HOM05D003937 ORTHO05D004583 4.4e-32 142.5 265 38.9
CsaV3_6G031550 Cucumis sativus L. HOM05D003937 ORTHO05D004583 2.2e-31 140.2 240 42.1
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 4.9e-31 139.0 280 37.9
FAN04G2017 Fragaria x ananassa HOM05D003937 ORTHO05D004583 8.4e-31 138.3 265 38.1
FAN08G1258 Fragaria x ananassa HOM05D003937 ORTHO05D004583 5.4e-30 135.6 263 38.4
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 5.4e-30 135.6 283 37.5
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 3.5e-29 132.9 287 33.1
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 3.5e-29 132.9 282 35.8
Sed0014450 Sechium edule HOM05D003937 ORTHO05D004583 6.0e-29 132.1 256 39.1
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 6.0e-29 132.1 280 35.0
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 1.3e-28 131.0 277 35.0
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 1.3e-28 131.0 286 35.0
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 3.0e-28 129.8 268 38.1
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 5.1e-28 129.0 277 36.5
MELO3C026537.2 Cucumis melo HOM05D003937 ORTHO05D004583 5.6e-27 125.6 253 38.3
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 1.3e-26 124.4 287 36.2
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 4.8e-26 122.5 278 34.2
PGSC0003DMG400009905 Solanum tuberosum HOM05D003937 ORTHO05D004583 1.1e-25 121.3 291 32.6
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 1.8e-25 120.6 274 35.8
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 1.8e-25 120.6 279 35.5
ECA233G5124 Erigeron canadensis HOM05D003937 ORTHO05D004583 3.1e-25 119.8 254 34.6
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 3.1e-25 119.8 287 34.8
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 5.3e-25 119.0 289 35.6
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 1.2e-24 117.9 255 35.7
vmacro04409 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 1.2e-24 117.9 267 36.3
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 4.5e-24 115.9 251 35.9
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 9.9e-24 114.8 280 32.5
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 1.7e-23 114.0 272 34.6
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 3.8e-23 112.8 271 32.5
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 1.9e-22 110.5 262 34.0
Oeu033835.1 Olea europaea HOM05D003937 ORTHO05D004583 2.4e-22 110.2 262 35.9
Migut.N02961 Erythranthe guttata HOM05D003937 ORTHO05D004583 5.4e-22 109.0 249 34.9
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 7.1e-22 108.6 265 36.6
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 7.1e-22 108.6 88 62.5
Haze_02016 Corylus avellana HOM05D003937 ORTHO05D004583 9.3e-22 108.2 263 34.2
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 9.3e-22 108.2 276 35.5
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 9.3e-22 108.2 265 33.6
Peaxi162Scf00711g00414 Petunia axillaris HOM05D003937 ORTHO05D004583 1.2e-21 107.8 226 37.2
Cfa005351 Carpinus fangiana HOM05D003937 ORTHO05D004583 2.1e-21 107.1 254 36.2
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 2.7e-21 106.7 289 32.5
DCAR_016775 Daucus carota HOM05D003937 ORTHO05D004583 3.5e-21 106.3 294 32.3
HanXRQChr12g0367561 Helianthus annuus HOM05D003937 ORTHO05D004583 3.5e-21 106.3 256 31.6
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 3.5e-21 106.3 269 36.1
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 3.5e-21 106.3 271 34.7
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 4.6e-21 105.9 265 36.2
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 4.6e-21 105.9 248 35.9
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 7.9e-21 105.1 282 32.6
ClCG08G009390 Citrullus lanatus HOM05D003937 ORTHO05D004583 1.0e-20 104.8 236 36.4
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 1.3e-20 104.4 273 35.2
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.3e-20 104.4 251 34.3
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 1.8e-20 104.0 284 35.2
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.8e-20 104.0 251 33.5
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 1.8e-20 104.0 251 33.5
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 1.8e-20 104.0 265 33.2
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 2.3e-20 103.6 271 33.2
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 3.9e-20 102.8 255 37.3
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 5.1e-20 102.4 255 35.3
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 6.7e-20 102.1 281 29.2
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 6.7e-20 102.1 252 34.5
SGA_v2.0_scaffold364G49977 Striga asiatica HOM05D003937 ORTHO05D004583 8.7e-20 101.7 251 33.5
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 1.1e-19 101.3 270 33.0
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 1.5e-19 100.9 269 34.2
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 1.5e-19 100.9 293 33.1
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 1.9e-19 100.5 273 33.3
Gorai.005G258900 Gossypium raimondii HOM05D003937 ORTHO05D004583 3.3e-19 99.8 265 35.1
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 4.3e-19 99.4 263 32.7
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 5.6e-19 99.0 274 33.2
Lsat_1_v5_gn_8_26360 Lactuca sativa HOM05D003937 ORTHO05D004583 9.6e-19 98.2 237 35.0
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 2.1e-18 97.1 254 32.3
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 2.8e-18 96.7 271 33.2
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 6.2e-18 95.5 274 32.5
Dinv31951 Davidia involucrata HOM05D003937 ORTHO05D004583 1.1e-17 94.7 94 54.3
unitig_8.g3603 Utricularia gibba HOM05D000001 ORTHO05D000003 1.1e-17 94.7 272 36.0
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 1.4e-17 94.4 275 30.9
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.8e-17 94.0 264 33.7
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 2.4e-17 93.6 250 32.0
TWI79G1491 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 9.0e-17 91.7 253 30.8
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 1.2e-16 91.3 265 32.1
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 1.2e-16 91.3 278 32.7
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 1.2e-16 91.3 245 33.5
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 2.0e-16 90.5 253 33.2
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 2.6e-16 90.1 271 34.7
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 3.4e-16 89.7 255 31.8
HanXRQChr13g0409731 Helianthus annuus HOM05D003937 ORTHO05D004583 5.8e-16 89.0 82 53.7
CiPaw.07G137900 Carya illinoinensis HOM05D003937 ORTHO05D004583 7.6e-16 88.6 132 40.9
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 1.3e-15 87.8 282 30.5
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 2.2e-15 87.0 266 33.8
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 8.4e-15 85.1 237 33.3
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 8.4e-15 85.1 263 30.8
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 1.4e-14 84.3 278 29.9
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 1.4e-14 84.3 270 30.0
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 2.5e-14 83.6 251 33.5
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 3.2e-14 83.2 242 33.5
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 4.2e-14 82.8 262 28.6
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 5.5e-14 82.4 123 43.1
AT4G38280 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 7.1e-14 82.0 97 46.4
Carub.0007s0022 Capsella rubella HOM05D003937 ORTHO05D004583 1.2e-13 81.3 178 37.1
vmacro08750 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 1.6e-13 80.9 65 61.5
AL7G10200 Arabidopsis lyrata HOM05D003937 ORTHO05D004583 2.1e-13 80.5 70 54.3
AT2G45250 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 2.1e-13 80.5 70 54.3
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 2.1e-13 80.5 65 61.5
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 4.6e-13 79.3 65 60.0
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 6.0e-13 79.0 114 44.7
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 6.0e-13 79.0 114 44.7
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 6.0e-13 79.0 114 44.7
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 7.9e-13 78.6 96 49.0
DCAR_015663 Daucus carota HOM05D003937 ORTHO05D004583 1.0e-12 78.2 237 30.8
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 1.0e-12 78.2 65 55.4
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 1.0e-12 78.2 65 60.0
Sp7g37440 Schrenkiella parvula HOM05D003937 ORTHO05D004583 1.0e-12 78.2 70 57.1
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.3e-12 77.8 96 49.0
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 1.3e-12 77.8 89 51.7
Aa31LG6G16740 Aethionema arabicum HOM05D003937 ORTHO05D004583 3.0e-12 76.6 106 43.4
Hund06165 Selenicereus undatus HOM05D003937 ORTHO05D004583 3.0e-12 76.6 258 29.8
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 3.0e-12 76.6 273 28.6
Thhalv10026442m.g Eutrema salsugineum HOM05D003937 ORTHO05D004583 3.9e-12 76.3 141 38.3
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 3.9e-12 76.3 123 43.1
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 3.9e-12 76.3 274 28.1
Cc09_g10730 Coffea canephora HOM05D003937 ORTHO05D004583 5.1e-12 75.9 85 50.6
Migut.B00012 Erythranthe guttata HOM05D003937 ORTHO05D004583 6.7e-12 75.5 65 56.9
Prupe.8G178200 Prunus persica HOM05D003937 ORTHO05D004583 6.7e-12 75.5 287 30.3
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 8.7e-12 75.1 236 33.1
Nn6g31719 Nelumbo nucifera HOM05D003937 ORTHO05D004583 1.5e-11 74.3 78 50.0
BolC3t20032H Brassica oleracea HOM05D003937 ORTHO05D004583 1.9e-11 73.9 70 54.3
HPP92_021046 Vanilla planifolia HOM05D003937 ORTHO05D004583 1.9e-11 73.9 249 30.5
C03p77740 Brassica napus HOM05D003937 ORTHO05D004583 3.3e-11 73.2 70 54.3
Zm00001eb104250 Zea mays HOM05D003937 ORTHO05D004583 3.3e-11 73.2 81 43.2
Lalb_Chr11g0061231 Lupinus albus HOM05D003937 ORTHO05D004583 5.7e-11 72.4 85 49.4
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 5.7e-11 72.4 286 30.8
Nitab4.5_0011212g0050 Nicotiana tabacum HOM05D003937 ORTHO05D004583 5.7e-11 72.4 266 27.4
HanXRQChr12g0374421 Helianthus annuus HOM05D003937 ORTHO05D004583 7.4e-11 72.0 216 33.3
CAN.G1725.8 Capsicum annuum HOM05D003937 ORTHO05D004583 1.3e-10 71.2 133 37.6
BraA08t34322Z Brassica rapa HOM05D003937 ORTHO05D004583 1.6e-10 70.9 84 48.8
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 1.6e-10 70.9 127 35.4
BcaB03g12256 Brassica carinata HOM05D003937 ORTHO05D004583 2.1e-10 70.5 66 56.1
CDE05G2511 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 8.2e-10 68.6 241 29.0
A08p23700 Brassica napus HOM05D003937 ORTHO05D004583 1.1e-09 68.2 65 53.8
ECA246G4591 Erigeron canadensis HOM05D003937 ORTHO05D004583 1.4e-09 67.8 196 34.2
Lsat_1_v5_gn_3_48780 Lactuca sativa HOM05D003937 ORTHO05D004583 1.4e-09 67.8 82 46.3
GSVIVG01026659001 Vitis vinifera HOM05D003937 ORTHO05D004583 1.8e-09 67.4 98 42.9
Os04g0136900 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 9.0e-09 65.1 106 38.7
arahy.Tifrunner.gnm1.ann1.BKYH70 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.2e-08 64.7 240 30.0
Nitab4.5_0000783g0190 Nicotiana tabacum HOM05D003937 ORTHO05D004583 1.2e-08 64.7 261 26.1
SGA_v2.0_scaffold32G13344 Striga asiatica HOM05D003937 ORTHO05D004583 1.2e-08 64.7 123 41.5
CDE06G0218 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 1.5e-08 64.3 112 34.8
ECA233G2935 Erigeron canadensis HOM05D003937 ORTHO05D004583 2.0e-08 63.9 64 56.2
SMO347G0358 Selaginella moellendorffii HOM05D003937 ORTHO05D004583 1.0e-07 61.6 111 36.9
Rhsim12G0014000 Rhododendron simsii HOM05D005440 ORTHO05D007314 1.3e-07 61.2 55 56.4
Zm00001eb420050 Zea mays HOM05D003937 ORTHO05D004583 1.3e-07 61.2 155 32.3
arahy.Tifrunner.gnm1.ann1.13SVP6 Arachis hypogaea HOM05D003937 ORTHO05D004583 2.9e-07 60.1 51 60.8
Os09g0549400 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 3.8e-07 59.7 70 42.9
SEGI_28645 Sequoiadendron giganteum HOM05D003937 ORTHO05D004583 3.8e-07 59.7 138 32.6
Pp3c19_6980 Physcomitrium patens HOM05D003937 ORTHO05D004583 6.5e-07 58.9 100 33.0
ATR0661G493 Amborella trichopoda HOM05D003937 ORTHO05D004583 8.4e-07 58.5 115 33.9
CARHR294070 Cardamine hirsuta HOM05D003937 ORTHO05D004583 8.4e-07 58.5 51 54.9
Mapoly0074s0020 Marchantia polymorpha HOM05D003937 ORTHO05D004583 4.2e-06 56.2 109 33.9


User provided reference genes

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