Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G1237 Cannabis sativa HOM05D004910 ORTHO05D006864 0.0e+00 4091.6 2142 100.0
Cfa003693 Carpinus fangiana HOM05D004910 ORTHO05D006864 0.0e+00 2809.2 2168 70.5
RcHm_v2.0_Chr1g0342311 Rosa chinensis HOM05D004910 ORTHO05D006864 0.0e+00 2763.0 2160 69.8
Prupe.2G105000 Prunus persica HOM05D004910 ORTHO05D006864 0.0e+00 2744.5 2166 69.9
MD07G1080500 Malus domestica HOM05D004910 ORTHO05D006864 0.0e+00 2718.7 2173 68.8
FAN10G3403 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 2699.5 2164 68.0
FvH4_7g07740 Fragaria vesca HOM05D004910 ORTHO05D006864 0.0e+00 2679.4 2164 68.1
FAN03G0816 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 2671.0 2187 67.1
FAN06G0636 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 2666.0 2184 67.3
Potri.013G071800 Populus trichocarpa HOM05D004910 ORTHO05D006864 0.0e+00 2659.0 2180 66.8
CiPaw.02G046700 Carya illinoinensis HOM05D004910 ORTHO05D006864 0.0e+00 2650.5 2170 66.8
FAN01G0980 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 2650.2 2257 65.4
Thecc.05G234000 Theobroma cacao HOM05D004910 ORTHO05D006864 0.0e+00 2612.0 2178 66.0
Manes.08G157000 Manihot esculenta HOM05D004910 ORTHO05D006864 0.0e+00 2539.6 2180 64.8
TAR629G2465 Trochodendron aralioides HOM05D004910 ORTHO05D006864 0.0e+00 2539.2 2205 64.0
Duzib177G0285 Durio zibethinus HOM05D004910 ORTHO05D006864 0.0e+00 2529.6 2179 64.8
Gorai.007G249800 Gossypium raimondii HOM05D004910 ORTHO05D006864 0.0e+00 2515.7 2187 64.4
Glyma.03G099800 Glycine max HOM05D004910 ORTHO05D006864 0.0e+00 2514.6 2178 63.5
Glyma.07G122900 Glycine max HOM05D004910 ORTHO05D006864 0.0e+00 2462.2 2174 62.6
Phvul.010G039700 Phaseolus vulgaris HOM05D004910 ORTHO05D006864 0.0e+00 2460.3 2174 62.3
TWI34G0933 Tripterygium wilfordii HOM05D004910 ORTHO05D006864 0.0e+00 2453.3 2193 62.3
Dinv43524 Davidia involucrata HOM05D004910 ORTHO05D006864 0.0e+00 2451.8 2176 63.5
GSVIVG01019298001 Vitis vinifera HOM05D004910 ORTHO05D006864 0.0e+00 2441.0 2209 61.7
Lj3g0022995 Lotus japonicus HOM05D004910 ORTHO05D006864 0.0e+00 2414.4 2174 61.3
TPR.G17367 Trifolium pratense HOM05D004910 ORTHO05D006864 0.0e+00 2414.4 2173 61.3
Ca_25886_v3 Cicer arietinum L. HOM05D004910 ORTHO05D006864 0.0e+00 2404.0 2175 61.4
Lalb_Chr07g0194851 Lupinus albus HOM05D004910 ORTHO05D006864 0.0e+00 2388.2 2176 61.3
Haze_15792 Corylus avellana HOM05D004910 ORTHO05D006864 0.0e+00 2385.5 1953 67.7
Medtr8g009780 Medicago truncatula HOM05D004910 ORTHO05D006864 0.0e+00 2384.0 2178 60.8
MELO3C006215.2 Cucumis melo HOM05D004910 ORTHO05D006864 0.0e+00 2382.8 2170 61.0
Sed0008127 Sechium edule HOM05D004910 ORTHO05D006864 0.0e+00 2368.6 2179 60.5
CsaV3_3G009930 Cucumis sativus L. HOM05D004910 ORTHO05D006864 0.0e+00 2358.2 2167 60.5
Ciclev10030475m.g Citrus clementina HOM05D004910 ORTHO05D006864 0.0e+00 2338.1 2182 60.6
Eucgr.D01069 Eucalyptus grandis HOM05D004910 ORTHO05D006864 0.0e+00 2282.3 2177 60.3
Rhsim07G0047300 Rhododendron simsii HOM05D004910 ORTHO05D006864 0.0e+00 2226.8 2027 60.3
DCAR_029567 Daucus carota HOM05D004910 ORTHO05D006864 0.0e+00 2223.7 2193 57.3
Aqoxy3G02002 Aquilegia oxysepala HOM05D004910 ORTHO05D006864 0.0e+00 2217.2 2199 57.4
arahy.Tifrunner.gnm1.ann1.7UUD9R Arachis hypogaea HOM05D004910 ORTHO05D006864 0.0e+00 2199.9 2093 58.6
MBI04_g30775_MAGBIO Magnolia biondii HOM05D004910 ORTHO05D006864 0.0e+00 2197.9 2247 56.7
Nitab4.5_0006461g0010 Nicotiana tabacum HOM05D004910 ORTHO05D006864 0.0e+00 2191.4 2181 57.4
Nitab4.5_0000792g0070 Nicotiana tabacum HOM05D004910 ORTHO05D006864 0.0e+00 2184.5 2192 57.3
PSO782G5450 Papaver somniferum HOM05D004910 ORTHO05D006864 0.0e+00 2184.1 2195 57.2
SalBow4G1969 Salvia bowleyana HOM05D004910 ORTHO05D006864 0.0e+00 2176.4 2181 56.1
Cc08_g05600 Coffea canephora HOM05D004910 ORTHO05D006864 0.0e+00 2175.2 2176 56.2
ClCG05G002500 Citrullus lanatus HOM05D004910 ORTHO05D006864 0.0e+00 2172.5 2098 57.7
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 0.0e+00 2169.8 2168 58.0
THA.LOC104805731 Tarenaya hassleriana HOM05D004910 ORTHO05D006864 0.0e+00 2162.9 2172 57.0
CAN.G992.20 Capsicum annuum HOM05D004910 ORTHO05D006864 0.0e+00 2158.6 2178 56.6
VMungo0331G1962 Vigna mungo HOM05D004910 ORTHO05D006864 0.0e+00 2156.3 2048 59.1
Lsat_1_v5_gn_4_42261 Lactuca sativa HOM05D004910 ORTHO05D006864 0.0e+00 2114.0 2164 56.8
Sopen01g032990 Solanum pennellii HOM05D004910 ORTHO05D006864 0.0e+00 2110.1 2178 56.0
Gohir.D11G236600 Gossypium hirsutum HOM05D004910 ORTHO05D006864 0.0e+00 2078.9 1890 62.8
QL04p053216 Quercus lobata HOM05D004910 ORTHO05D006864 0.0e+00 2078.5 1668 67.7
ECA234G3354 Erigeron canadensis HOM05D004910 ORTHO05D006864 0.0e+00 2074.3 2145 56.7
Gohir.A11G225700 Gossypium hirsutum HOM05D004910 ORTHO05D006864 0.0e+00 2064.7 1887 62.4
vmacro13594 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 0.0e+00 2035.8 2132 54.4
HanXRQChr15g0492621 Helianthus annuus HOM05D004910 ORTHO05D006864 0.0e+00 2012.3 2147 55.0
Migut.N01670 Erythranthe guttata HOM05D004910 ORTHO05D006864 0.0e+00 2004.9 2175 53.9
EL10Ac1g00665 Beta vulgaris HOM05D004910 ORTHO05D006864 0.0e+00 2000.7 2286 52.4
CSS0017393 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 0.0e+00 2000.7 1909 60.3
AL7G44770 Arabidopsis lyrata HOM05D004910 ORTHO05D006864 0.0e+00 1934.8 2159 53.3
Aa31LG9G17970 Aethionema arabicum HOM05D004910 ORTHO05D006864 0.0e+00 1919.8 2245 51.2
ATR0829G021 Amborella trichopoda HOM05D004910 ORTHO05D006864 0.0e+00 1908.6 2187 52.2
Ah.05g177140 Amaranthus hybridus HOM05D004910 ORTHO05D006864 0.0e+00 1887.8 2131 51.7
Lj9A617T56 Lonicera japonica HOM05D004910 ORTHO05D006864 0.0e+00 1878.6 1854 57.1
Hund26917 Selenicereus undatus HOM05D004910 ORTHO05D006864 0.0e+00 1865.5 2093 51.8
SGA_v2.0_scaffold4G02226 Striga asiatica HOM05D004910 ORTHO05D006864 0.0e+00 1837.4 2022 53.1
Peaxi162Scf00907g00121 Petunia axillaris HOM05D004910 ORTHO05D006864 0.0e+00 1797.3 1995 53.8
Solyc01g081430.4 Solanum lycopersicum HOM05D004910 ORTHO05D006864 0.0e+00 1784.6 1961 53.9
PGR083G1400 Punica granatum HOM05D004910 ORTHO05D006864 0.0e+00 1689.9 1537 59.5
Zm00001eb025470 Zea mays HOM05D004910 ORTHO05D006864 0.0e+00 1619.8 1972 47.1
Oeu002050.1 Olea europaea HOM05D004910 ORTHO05D006864 0.0e+00 1559.3 1667 54.5
AUR62038026 Chenopodium quinoa HOM05D004910 ORTHO05D006864 0.0e+00 1556.2 1752 52.4
CARHR216720 Cardamine hirsuta HOM05D004910 ORTHO05D006864 0.0e+00 1496.5 1684 53.0
CDE12G0362 Ceratophyllum demersum HOM05D004910 ORTHO05D006864 0.0e+00 1446.8 1793 46.2
AUR62014509 Chenopodium quinoa HOM05D004910 ORTHO05D006864 0.0e+00 1429.8 1698 50.8
Sc26g0002020 Simmondsia chinensis HOM05D004910 ORTHO05D006864 0.0e+00 1425.6 1682 50.9
arahy.Tifrunner.gnm1.ann1.X9S6DI Arachis hypogaea HOM05D004910 ORTHO05D006864 0.0e+00 1424.8 1555 54.2
Atru.chr2.1651 Acer truncatum HOM05D004910 ORTHO05D006864 0.0e+00 1415.2 1121 66.4
Mapoly0032s0018 Marchantia polymorpha HOM05D004910 ORTHO05D006864 0.0e+00 1387.5 2291 41.3
AagrBONN_evm.TU.Sc2ySwM_362.1947 Anthoceros agrestis HOM05D004910 ORTHO05D006864 0.0e+00 1230.3 1949 40.0
Pp3c7_26820 Physcomitrium patens HOM05D004910 ORTHO05D006864 0.0e+00 1214.5 2257 37.7
Atru.chr2.1650 Acer truncatum HOM05D004910 ORTHO05D006864 0.0e+00 1182.9 1019 65.7
Psat4g216280 Pisum sativum HOM05D004910 ORTHO05D006864 0.0e+00 1160.2 1318 50.5
arahy.Tifrunner.gnm1.ann1.L1X5S4 Arachis hypogaea HOM05D004910 ORTHO05D006864 0.0e+00 1104.0 1140 56.7
Cpa.g.sc73.58 Carica papaya HOM05D004910 ORTHO05D006864 2.9e-311 1073.2 1029 58.4
PSO063G2935 Papaver somniferum HOM05D004910 ORTHO05D006864 1.0e-299 1034.6 957 58.5
PSO063G6831 Papaver somniferum HOM05D004910 ORTHO05D006864 4.2e-293 1012.7 1123 55.7
SEGI_03249 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 1.3e-270 937.9 1382 40.7
Os04g0218600 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 6.8e-251 872.5 975 50.6
QL04p053202 Quercus lobata HOM05D004910 ORTHO05D006864 3.3e-229 800.4 504 80.6
Actinidia21201 Actinidia chinensis HOM05D004910 ORTHO05D006864 1.6e-220 771.5 879 49.9
CBR_g49462 Chara braunii HOM05D004910 ORTHO05D006864 1.6e-220 771.5 2733 28.8
unitig_578.g16705 Utricularia gibba HOM05D004910 ORTHO05D006864 2.1e-199 701.4 628 59.4
Psat4g215960 Pisum sativum HOM05D004910 ORTHO05D006864 2.7e-199 701.0 504 70.8
SMO347G0286 Selaginella moellendorffii HOM05D004910 ORTHO05D006864 3.2e-192 677.6 1468 32.8
Hma1.2p1_0353F.1_g133240 Hydrangea macrophylla HOM05D004910 ORTHO05D006864 1.8e-155 555.4 413 69.7
arahy.Tifrunner.gnm1.ann1.2JI1W5 Arachis hypogaea HOM05D004910 ORTHO05D006864 1.4e-139 502.7 377 66.8
PGR083G0666 Punica granatum HOM05D004910 ORTHO05D006864 9.2e-131 473.4 559 56.0
Prupe.2G100700 Prunus persica HOM05D004910 ORTHO05D006864 4.6e-122 444.5 354 66.4
AUR62014510 Chenopodium quinoa HOM05D004910 ORTHO05D006864 5.3e-118 431.0 405 59.0
AUR62038025 Chenopodium quinoa HOM05D004910 ORTHO05D006864 8.4e-116 423.7 408 58.3
CSS0010640 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 2.4e-110 405.6 342 65.5
Cpa.g.sc73.62 Carica papaya HOM05D004910 ORTHO05D006864 1.3e-100 373.2 227 80.6
Actinidia21200 Actinidia chinensis HOM05D004910 ORTHO05D006864 4.3e-96 358.2 345 60.0
Solyc01g081420.3 Solanum lycopersicum HOM05D004910 ORTHO05D006864 1.6e-95 356.3 216 78.7
Peaxi162Scf00907g00123 Petunia axillaris HOM05D004910 ORTHO05D006864 4.2e-91 341.7 230 73.9
Haze_15794 Corylus avellana HOM05D004910 ORTHO05D006864 7.4e-88 330.9 183 86.9
Cpa.g.sc73.57 Carica papaya HOM05D004910 ORTHO05D006864 1.4e-78 300.1 347 61.7
Actinidia31737 Actinidia chinensis HOM05D004910 ORTHO05D006864 1.0e-76 293.9 552 38.0
CDE12G0963 Ceratophyllum demersum HOM05D004910 ORTHO05D006864 1.1e-72 280.4 379 54.9
Psat4g216320 Pisum sativum HOM05D004910 ORTHO05D006864 4.8e-71 275.0 306 63.4
Cpa.g.sc73.59 Carica papaya HOM05D004910 ORTHO05D006864 1.0e-60 240.7 282 52.1
VMungo0331G1288 Vigna mungo HOM05D004910 ORTHO05D010195 2.5e-59 236.1 128 85.2
Gohir.A11G225602 Gossypium hirsutum HOM05D004910 ORTHO05D006864 4.4e-56 225.3 148 74.3
AagrBONN_evm.TU.Sc2ySwM_117.2552 Anthoceros agrestis HOM05D004910 ORTHO05D006864 6.3e-55 221.5 209 55.5
PGSC0003DMG400031109 Solanum tuberosum HOM05D004910 ORTHO05D006864 1.8e-49 203.4 217 65.4
CSS0010022 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 5.4e-46 191.8 120 81.7
CSS0036242 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 5.4e-46 191.8 120 81.7
Rhsim07G0047400 Rhododendron simsii HOM05D004910 ORTHO05D006864 1.2e-45 190.7 178 68.0
vmacro13596 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 5.9e-45 188.3 164 70.1
CSS0011325 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 1.2e-42 180.6 133 66.9
Os10g0581000 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 2.0e-40 173.3 331 48.3
Lj9A617T57 Lonicera japonica HOM05D004910 ORTHO05D006864 1.1e-38 167.5 143 70.6
CSS0002002 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 1.8e-33 150.2 73 90.4
CSS0008041 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 1.8e-33 150.2 73 90.4
FvH4_1g21580 Fragaria vesca HOM05D004910 ORTHO05D045425 4.0e-33 149.1 135 60.0
Psat6g100000 Pisum sativum HOM05D004910 ORTHO05D030483 4.1e-30 139.0 211 42.2
Actinidia21203 Actinidia chinensis HOM05D004910 ORTHO05D006864 1.1e-27 131.0 64 89.1
Os04g0218701 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 1.2e-26 127.5 367 41.1
SEGI_03241 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 2.8e-26 126.3 95 65.3
RcHm_v2.0_Chr4g0408121 Rosa chinensis HOM05D004910 ORTHO05D006864 8.9e-25 121.3 85 71.8
SEGI_03420 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 4.9e-23 115.5 200 44.5
RcHm_v2.0_Chr4g0407941 Rosa chinensis HOM05D004910 ORTHO05D019205 1.2e-18 100.9 65 73.8
Psat0s999g0120 Pisum sativum HOM05D004910 ORTHO05D030483 8.9e-17 94.7 146 39.7
CSS0032650 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 8.4e-15 88.2 57 73.7
Nitab4.5_0011076g0010 Nicotiana tabacum HOM05D004910 ORTHO05D006864 3.2e-14 86.3 73 63.0
ClCG00G006380 Citrullus lanatus HOM05D004910 ORTHO05D006864 4.2e-14 85.9 53 79.2
Dinv00622 Davidia involucrata HOM05D004910 ORTHO05D006864 4.2e-14 85.9 56 71.4
FAN23G3082 Fragaria x ananassa HOM05D004910 ORTHO05D045425 5.4e-14 85.5 65 69.2
vmacro13595 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 5.4e-14 85.5 82 76.8
FAN03G1104 Fragaria x ananassa HOM05D004910 ORTHO05D019205 1.2e-10 74.3 51 70.6
Phvul.010G039400 Phaseolus vulgaris HOM05D004910 ORTHO05D006864 1.4e-09 70.9 55 67.3
Gohir.D06G038650 Gossypium hirsutum HOM05D004910 ORTHO05D030909 2.0e-08 67.0 55 65.5
Actinidia21202 Actinidia chinensis HOM05D004910 ORTHO05D030909 2.2e-07 63.5 49 71.4
Haze_15793 Corylus avellana HOM05D004910 ORTHO05D006864 7.1e-06 58.5 50 60.0


User provided reference genes

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