Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G1232 Cannabis sativa HOM05D006946 ORTHO05D008634 7.2e-198 693.7 353 100.0
Atru.chr5.122 Acer truncatum HOM05D006946 ORTHO05D008634 4.9e-114 415.2 354 60.2
QL04p030124 Quercus lobata HOM05D006946 ORTHO05D008634 4.6e-112 408.7 351 62.1
FAN06G0853 Fragaria x ananassa HOM05D006946 ORTHO05D008634 7.9e-112 407.9 360 60.0
FvH4_7g10220 Fragaria vesca HOM05D006946 ORTHO05D008634 1.3e-111 407.1 360 59.7
FAN03G2893 Fragaria x ananassa HOM05D006946 ORTHO05D008634 1.3e-111 407.1 360 60.6
FAN06G0591 Fragaria x ananassa HOM05D006946 ORTHO05D008634 1.1e-110 404.1 360 59.7
GSVIVG01018284001 Vitis vinifera HOM05D006946 ORTHO05D008634 4.0e-108 395.6 350 59.1
FAN10G0617 Fragaria x ananassa HOM05D006946 ORTHO05D008634 5.3e-108 395.2 358 59.2
FAN10G1802 Fragaria x ananassa HOM05D006946 ORTHO05D008634 1.2e-107 394.0 358 58.9
Haze_02851 Corylus avellana HOM05D006946 ORTHO05D008634 5.8e-107 391.7 344 61.3
Ciclev10020918m.g Citrus clementina HOM05D006946 ORTHO05D008634 2.9e-106 389.4 354 57.1
Cfa011066 Carpinus fangiana HOM05D006946 ORTHO05D008634 1.4e-105 387.1 421 53.0
Thecc.01G395400 Theobroma cacao HOM05D006946 ORTHO05D008634 2.7e-104 382.9 353 56.4
Phvul.010G049700 Phaseolus vulgaris HOM05D006946 ORTHO05D008634 1.3e-103 380.6 361 55.7
VMungo0331G1797 Vigna mungo HOM05D006946 ORTHO05D008634 5.1e-103 378.6 361 55.1
CSS0010598 Camellia sinensis var. sinensis HOM05D006946 ORTHO05D008634 1.1e-102 377.5 353 58.6
RcHm_v2.0_Chr1g0347961 Rosa chinensis HOM05D006946 ORTHO05D008634 1.1e-102 377.5 357 57.4
TAR629G0179 Trochodendron aralioides HOM05D006946 ORTHO05D008634 1.5e-102 377.1 360 57.8
Glyma.03G110700 Glycine max HOM05D006946 ORTHO05D008634 2.5e-102 376.3 364 55.5
Rhsim07G0036200 Rhododendron simsii HOM05D006946 ORTHO05D008634 1.3e-101 374.0 352 58.0
Actinidia32506 Actinidia chinensis HOM05D006946 ORTHO05D008634 4.8e-101 372.1 347 55.9
arahy.Tifrunner.gnm1.ann1.4A1F8H Arachis hypogaea HOM05D006946 ORTHO05D008634 2.4e-100 369.8 364 53.8
Potri.002G138000 Populus trichocarpa HOM05D006946 ORTHO05D008634 3.1e-100 369.4 355 55.8
COL.COLO4_12403 Corchorus olitorius HOM05D006946 ORTHO05D008634 4.0e-100 369.0 358 54.7
arahy.Tifrunner.gnm1.ann1.GB8G30 Arachis hypogaea HOM05D006946 ORTHO05D008634 2.6e-99 366.3 364 53.0
Duzib133G0968 Durio zibethinus HOM05D006946 ORTHO05D008634 4.2e-97 359.0 351 55.3
vmacro13499 Vaccinium macrocarpon HOM05D006946 ORTHO05D008634 2.1e-96 356.7 352 56.2
TPR.G33124 Trifolium pratense HOM05D006946 ORTHO05D008634 1.9e-94 350.1 364 51.9
Ca_25802_v3 Cicer arietinum L. HOM05D006946 ORTHO05D008634 2.5e-94 349.7 359 51.3
Gorai.008G109100 Gossypium raimondii HOM05D006946 ORTHO05D008634 2.5e-94 349.7 347 55.9
Lj3g0014310 Lotus japonicus HOM05D006946 ORTHO05D008634 4.3e-94 349.0 338 53.8
Medtr8g006950 Medicago truncatula HOM05D006946 ORTHO05D008634 7.4e-94 348.2 362 50.0
PGR042G0965 Punica granatum HOM05D006946 ORTHO05D008634 4.8e-93 345.5 368 50.8
TWI14G0580 Tripterygium wilfordii HOM05D006946 ORTHO05D008634 4.8e-93 345.5 339 55.5
Hma1.2p1_0072F.1_g038310 Hydrangea macrophylla HOM05D006946 ORTHO05D008634 1.8e-92 343.6 352 54.5
Gohir.D12G100200 Gossypium hirsutum HOM05D006946 ORTHO05D008634 2.4e-92 343.2 348 55.5
THA.LOC104817188 Tarenaya hassleriana HOM05D006946 ORTHO05D008634 2.4e-92 343.2 346 52.6
Sp5g02920 Schrenkiella parvula HOM05D006946 ORTHO05D008634 3.8e-90 335.9 280 58.6
HanXRQChr13g0423251 Helianthus annuus HOM05D006946 ORTHO05D008634 6.5e-90 335.1 310 56.1
Lalb_Chr07g0195411 Lupinus albus HOM05D006946 ORTHO05D008634 1.1e-89 334.3 358 52.8
MSTRG.20688 Avicennia marina HOM05D006946 ORTHO05D008634 2.5e-89 333.2 346 53.2
Cc02_g25140 Coffea canephora HOM05D006946 ORTHO05D008634 2.5e-89 333.2 361 52.4
PSO675G1257 Papaver somniferum HOM05D006946 ORTHO05D008634 2.5e-89 333.2 353 50.7
PSO717G0092 Papaver somniferum HOM05D006946 ORTHO05D008634 3.2e-89 332.8 353 51.3
ECA240G0199 Erigeron canadensis HOM05D006946 ORTHO05D008634 7.2e-89 331.6 340 55.6
Lsat_1_v5_gn_3_126900 Lactuca sativa HOM05D006946 ORTHO05D008634 7.2e-89 331.6 353 52.4
Aqoxy1G01627 Aquilegia oxysepala HOM05D006946 ORTHO05D008634 4.6e-88 328.9 357 49.6
vmacro13524 Vaccinium macrocarpon HOM05D006946 ORTHO05D008634 1.3e-87 327.4 412 47.8
Migut.B01532 Erythranthe guttata HOM05D006946 ORTHO05D008634 2.3e-87 326.6 348 52.3
CARHR170620 Cardamine hirsuta HOM05D006946 ORTHO05D008634 3.9e-87 325.9 280 58.6
Carub.0005s2704 Capsella rubella HOM05D006946 ORTHO05D008634 6.7e-87 325.1 280 56.8
Aqoxy5G04137 Aquilegia oxysepala HOM05D006946 ORTHO05D008634 1.5e-86 323.9 356 49.2
Eucgr.E01546 Eucalyptus grandis HOM05D006946 ORTHO05D008634 3.3e-86 322.8 367 50.4
Nitab4.5_0007027g0020 Nicotiana tabacum HOM05D006946 ORTHO05D008634 1.6e-85 320.5 349 50.7
PGSC0003DMG400025996 Solanum tuberosum HOM05D006946 ORTHO05D008634 2.2e-85 320.1 363 51.8
AT3G60300 Arabidopsis thaliana HOM05D006946 ORTHO05D008634 2.8e-85 319.7 288 55.6
Gohir.A12G097300 Gossypium hirsutum HOM05D006946 ORTHO05D008634 8.2e-85 318.2 251 63.7
Sopen01g036020 Solanum pennellii HOM05D006946 ORTHO05D008634 8.2e-85 318.2 364 51.9
Thhalv10006060m.g Eutrema salsugineum HOM05D006946 ORTHO05D008634 3.1e-84 316.2 281 54.8
Nn1g00836 Nelumbo nucifera HOM05D006946 ORTHO05D008634 4.1e-84 315.8 354 51.7
Aa31LG10G14420 Aethionema arabicum HOM05D006946 ORTHO05D008634 1.2e-83 314.3 288 55.6
Sabra02G0106500 Salix brachista HOM05D006946 ORTHO05D008634 1.2e-83 314.3 436 45.9
Solyc01g090220.4 Solanum lycopersicum HOM05D006946 ORTHO05D008634 1.0e-82 311.2 360 50.0
SalBow5G3575 Salvia bowleyana HOM05D006946 ORTHO05D008634 1.3e-82 310.8 364 49.7
SGA_v2.0_scaffold340G49324 Striga asiatica HOM05D006946 ORTHO05D008634 1.7e-82 310.5 372 48.4
Sc02g0003120 Simmondsia chinensis HOM05D006946 ORTHO05D008634 2.5e-81 306.6 369 48.5
CAN.G1473.5 Capsicum annuum HOM05D006946 ORTHO05D008634 3.6e-80 302.8 356 49.4
Psat4g224200 Pisum sativum HOM05D006946 ORTHO05D008634 1.4e-79 300.8 342 49.1
C04p32350 Brassica napus HOM05D006946 ORTHO05D008634 4.4e-78 295.8 282 54.6
AL5G42520 Arabidopsis lyrata HOM05D006946 ORTHO05D008634 6.3e-77 292.0 280 54.6
A04p01710 Brassica napus HOM05D006946 ORTHO05D008634 2.0e-75 287.0 278 52.9
CiPaw.14G020200 Carya illinoinensis HOM05D006946 ORTHO05D008634 1.0e-74 284.6 203 68.0
Zm00001eb200010 Zea mays HOM05D006946 ORTHO05D008634 2.2e-74 283.5 357 48.2
BolC4t24784H Brassica oleracea HOM05D006946 ORTHO05D008634 6.5e-74 282.0 300 51.3
Ah.05g177890 Amaranthus hybridus HOM05D006946 ORTHO05D008634 1.4e-71 274.2 311 50.5
EL10Ac1g00757 Beta vulgaris HOM05D006946 ORTHO05D008634 1.4e-71 274.2 353 46.2
BraA04t15895Z Brassica rapa HOM05D006946 ORTHO05D008634 1.4e-71 274.2 296 49.7
ATR0057G021 Amborella trichopoda HOM05D006946 ORTHO05D008634 1.5e-70 270.8 290 49.7
Nitab4.5_0000920g0010 Nicotiana tabacum HOM05D006946 ORTHO05D008634 1.3e-69 267.7 367 44.4
AUR62023403 Chenopodium quinoa HOM05D006946 ORTHO05D008634 9.1e-68 261.5 302 50.0
Prupe.2G132200 Prunus persica HOM05D006946 ORTHO05D008634 9.1e-68 261.5 264 53.4
Manes.05G055200 Manihot esculenta HOM05D006946 ORTHO05D008634 2.9e-66 256.5 260 56.5
HPP92_022105 Vanilla planifolia HOM05D006946 ORTHO05D008634 8.5e-66 255.0 356 42.1
HPP92_022132 Vanilla planifolia HOM05D006946 ORTHO05D008634 1.6e-64 250.8 356 41.9
unitig_750.g28410 Utricularia gibba HOM05D006946 ORTHO05D008634 3.3e-62 243.0 364 44.8
Dinv43613 Davidia involucrata HOM05D006946 ORTHO05D008634 5.7e-62 242.3 243 54.7
Actinidia18349 Actinidia chinensis HOM05D006946 ORTHO05D008634 1.4e-60 237.7 251 51.8
Peaxi162Scf00475g00422 Petunia axillaris HOM05D000253 ORTHO05D000149 1.3e-58 231.1 424 37.5
Medtr5g027110 Medicago truncatula HOM05D006946 ORTHO05D008634 7.5e-54 215.3 253 45.8
Hund27407 Selenicereus undatus HOM05D006946 ORTHO05D008634 4.8e-53 212.6 565 32.6
AUR62013748 Chenopodium quinoa HOM05D006946 ORTHO05D008634 1.8e-52 210.7 373 40.2
Mapoly0040s0025 Marchantia polymorpha HOM05D006946 ORTHO05D008634 5.0e-50 202.6 341 39.0
Lj9A556T13 Lonicera japonica HOM05D006946 ORTHO05D008634 3.2e-49 199.9 257 45.1
Hma1.2p1_0072F.1_g038320 Hydrangea macrophylla HOM05D006946 ORTHO05D008634 8.0e-48 195.3 163 61.3
PSO017G5203 Papaver somniferum HOM05D006946 ORTHO05D008634 2.9e-42 176.8 182 50.5
Potri.014G048000 Populus trichocarpa HOM05D006946 ORTHO05D008634 2.9e-42 176.8 208 48.6
AagrBONN_evm.TU.Sc2ySwM_117.2461 Anthoceros agrestis HOM05D006946 ORTHO05D008634 2.6e-38 163.7 299 35.5
Cpa.g.sc22.64 Carica papaya HOM05D006946 ORTHO05D008634 5.6e-33 146.0 104 70.2
SMO352G0084 Selaginella moellendorffii HOM05D006946 ORTHO05D008634 1.2e-30 138.3 164 43.9
CBR_g38735 Chara braunii HOM05D000019 ORTHO05D000353 1.2e-27 128.3 327 30.9
Cpa.g.sc22.65 Carica papaya HOM05D006946 ORTHO05D008634 2.3e-23 114.0 234 38.0
Psat1g142640 Pisum sativum HOM05D006946 ORTHO05D008634 1.0e-18 98.6 126 42.1
MCO13G420 Micromonas commoda HOM05D006946 ORTHO05D008634 7.3e-17 92.4 173 32.4
Psat2g026240 Pisum sativum HOM05D006946 ORTHO05D008634 2.1e-16 90.9 109 42.2
Psat1g142600 Pisum sativum HOM05D006946 ORTHO05D008634 6.8e-15 85.9 107 42.1
MD02G1213400 Malus domestica HOM05D006946 ORTHO05D008634 9.9e-14 82.0 114 43.0
Psat5g300840 Pisum sativum HOM05D006946 ORTHO05D008634 7.1e-12 75.9 63 52.4
Cre13.g581801 Chlamydomonas reinhardtii HOM05D006946 ORTHO05D008634 3.0e-10 70.5 233 27.0
Hma1.2p1_0072F.1_g038330 Hydrangea macrophylla HOM05D006946 ORTHO05D008634 5.6e-09 66.2 44 59.1
AUR62044571 Chenopodium quinoa HOM05D006946 ORTHO05D008634 7.3e-09 65.9 383 25.1
QL04p089514 Quercus lobata HOM05D006946 ORTHO05D008634 9.6e-09 65.5 37 75.7
SEGI_22555 Sequoiadendron giganteum HOM05D006946 ORTHO05D000002 2.1e-08 64.3 127 35.4
Os11g0565400 Oryza sativa ssp. japonica HOM05D006946 ORTHO05D008634 9.0e-07 58.9 47 57.4
Psat6g138360 Pisum sativum HOM05D000346 ORTHO05D008634 1.2e-06 58.5 89 36.0


User provided reference genes

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