Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G1226 Cannabis sativa HOM05D004179 ORTHO05D005248 0.0e+00 1087.0 574 100.0
CANSAT25G3047 Cannabis sativa HOM05D004179 ORTHO05D005248 0.0e+00 1085.1 574 99.8
Hma1.2p1_0796F.1_g219140 Hydrangea macrophylla HOM05D004179 ORTHO05D005248 1.4e-259 899.4 570 83.5
TWI79G0140 Tripterygium wilfordii HOM05D004179 ORTHO05D005248 9.1e-259 896.7 581 81.4
Cfa004570 Carpinus fangiana HOM05D004179 ORTHO05D005248 4.5e-258 894.4 584 82.2
Potri.009G096700 Populus trichocarpa HOM05D004179 ORTHO05D005248 1.0e-257 893.3 592 82.3
Ciclev10028086m.g Citrus clementina HOM05D004179 ORTHO05D005248 1.4e-256 889.4 581 81.4
Haze_10162 Corylus avellana HOM05D004179 ORTHO05D005248 4.2e-256 887.9 600 80.7
FAN15G2578 Fragaria x ananassa HOM05D004179 ORTHO05D005248 9.4e-256 886.7 580 80.5
FvH4_2g05320 Fragaria vesca HOM05D004179 ORTHO05D005248 3.6e-255 884.8 581 80.6
FAN20G2197 Fragaria x ananassa HOM05D004179 ORTHO05D005248 3.9e-254 881.3 581 80.6
Prupe.8G134200 Prunus persica HOM05D004179 ORTHO05D005248 3.9e-254 881.3 587 80.9
Potri.001G301000 Populus trichocarpa HOM05D004179 ORTHO05D005248 1.1e-253 879.8 589 80.3
arahy.Tifrunner.gnm1.ann1.T2YEM3 Arachis hypogaea HOM05D004179 ORTHO05D005248 2.6e-253 878.6 573 82.7
arahy.Tifrunner.gnm1.ann1.W9R5L5 Arachis hypogaea HOM05D004179 ORTHO05D005248 2.6e-253 878.6 573 82.9
THA.LOC104812909 Tarenaya hassleriana HOM05D004179 ORTHO05D005248 4.4e-253 877.9 578 81.5
TAR628G1050 Trochodendron aralioides HOM05D004179 ORTHO05D005248 6.3e-252 874.0 591 79.5
Gohir.D02G207400 Gossypium hirsutum HOM05D004179 ORTHO05D005248 1.1e-251 873.2 579 79.6
Gorai.005G235300 Gossypium raimondii HOM05D004179 ORTHO05D005248 1.1e-251 873.2 579 79.6
Lj5g0015320 Lotus japonicus HOM05D004179 ORTHO05D005248 1.1e-251 873.2 584 80.5
Psat6g219600 Pisum sativum HOM05D004179 ORTHO05D005248 1.1e-251 873.2 579 80.3
RcHm_v2.0_Chr6g0255511 Rosa chinensis HOM05D004179 ORTHO05D005248 1.8e-251 872.5 583 79.6
Eucgr.G01360 Eucalyptus grandis HOM05D004179 ORTHO05D005248 4.1e-251 871.3 586 79.9
Medtr1g107485 Medicago truncatula HOM05D004179 ORTHO05D005248 1.2e-250 869.8 578 80.6
PGR042G2277 Punica granatum HOM05D004179 ORTHO05D005248 1.2e-250 869.8 587 79.0
Gohir.A03G186600 Gossypium hirsutum HOM05D004179 ORTHO05D005248 2.0e-250 869.0 579 79.1
Sed0014414 Sechium edule HOM05D004179 ORTHO05D005248 2.6e-250 868.6 585 79.0
Manes.07G069700 Manihot esculenta HOM05D004179 ORTHO05D005248 4.5e-250 867.8 582 80.2
Ca_11083_v3 Cicer arietinum L. HOM05D004179 ORTHO05D005248 5.9e-250 867.5 577 80.8
Nn5g30409 Nelumbo nucifera HOM05D004179 ORTHO05D005248 5.9e-250 867.5 523 85.9
Oeu037243.1 Olea europaea HOM05D004179 ORTHO05D005248 7.7e-250 867.1 588 79.8
SGA_v2.0_scaffold225G43075 Striga asiatica HOM05D004179 ORTHO05D005248 5.0e-249 864.4 568 81.0
AL3G32890 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 6.5e-249 864.0 574 79.1
TAR376G0033 Trochodendron aralioides HOM05D004179 ORTHO05D005248 1.5e-248 862.8 580 78.1
QL11p033970 Quercus lobata HOM05D004179 ORTHO05D005248 4.2e-248 861.3 579 80.0
TPR.G13858 Trifolium pratense HOM05D004179 ORTHO05D005248 5.5e-248 860.9 588 79.4
Thecc.02G107000 Theobroma cacao HOM05D004179 ORTHO05D005248 9.4e-248 860.1 561 82.5
ClCG05G010240 Citrullus lanatus HOM05D004179 ORTHO05D005248 1.2e-247 859.8 584 78.8
GSVIVG01003166001 Vitis vinifera HOM05D004179 ORTHO05D005248 1.2e-247 859.8 579 79.8
Migut.B00382 Erythranthe guttata HOM05D004179 ORTHO05D005248 2.1e-247 859.0 522 85.8
Lj5A213T83 Lonicera japonica HOM05D004179 ORTHO05D005248 4.7e-247 857.8 530 84.3
CARHR094910 Cardamine hirsuta HOM05D004179 ORTHO05D005248 8.0e-247 857.1 580 78.4
Carub.0003s1929 Capsella rubella HOM05D004179 ORTHO05D005248 1.4e-246 856.3 574 78.7
MSTRG.20181 Avicennia marina HOM05D004179 ORTHO05D005248 3.0e-246 855.1 533 84.2
Rhsim05G0087800 Rhododendron simsii HOM05D004179 ORTHO05D005248 3.0e-246 855.1 570 80.2
Sabra09G0074300 Salix brachista HOM05D004179 ORTHO05D005248 3.0e-246 855.1 623 76.9
AT3G19490 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 6.7e-246 854.0 575 78.3
Thhalv10020369m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 6.7e-246 854.0 578 77.9
BolC5t33281H Brassica oleracea HOM05D004179 ORTHO05D005248 3.3e-245 851.7 581 77.8
C05p45560 Brassica napus HOM05D004179 ORTHO05D005248 4.4e-245 851.3 581 78.0
Lalb_Chr06g0165491 Lupinus albus HOM05D004179 ORTHO05D005248 7.5e-245 850.5 590 77.8
SalBow6G5260 Salvia bowleyana HOM05D004179 ORTHO05D005248 7.5e-245 850.5 496 87.3
A05p30130 Brassica napus HOM05D004179 ORTHO05D005248 9.7e-245 850.1 577 78.2
BraA05t21853Z Brassica rapa HOM05D004179 ORTHO05D005248 1.3e-244 849.7 577 78.2
Sp3g17540 Schrenkiella parvula HOM05D004179 ORTHO05D005248 1.7e-244 849.4 577 78.2
CiPaw.05G010800 Carya illinoinensis HOM05D004179 ORTHO05D005248 4.8e-244 847.8 548 82.3
AUR62010284 Chenopodium quinoa HOM05D004179 ORTHO05D005248 2.4e-243 845.5 561 80.7
PGSC0003DMG400022932 Solanum tuberosum HOM05D004179 ORTHO05D005248 3.1e-243 845.1 546 80.6
Aa31LG8G6240 Aethionema arabicum HOM05D004179 ORTHO05D005248 5.3e-243 844.3 588 77.2
Sopen11g020160 Solanum pennellii HOM05D004179 ORTHO05D005248 7.0e-243 844.0 546 80.2
BcaB06g26008 Brassica carinata HOM05D004179 ORTHO05D005248 9.1e-243 843.6 585 77.6
Solyc11g044540.2 Solanum lycopersicum HOM05D004179 ORTHO05D005248 1.2e-242 843.2 547 79.9
VMungo0720G2067 Vigna mungo HOM05D004179 ORTHO05D005248 1.2e-242 843.2 574 77.5
Aqoxy6G02887 Aquilegia oxysepala HOM05D004179 ORTHO05D005248 1.6e-242 842.8 493 87.0
MSTRG.5346 Avicennia marina HOM05D004179 ORTHO05D005248 4.5e-242 841.3 526 83.7
Oeu044290.1 Olea europaea HOM05D004179 ORTHO05D005248 5.9e-242 840.9 569 78.6
COL.COLO4_32603 Corchorus olitorius HOM05D004179 ORTHO05D005248 1.7e-241 839.3 561 79.1
unitig_37.g12803 Utricularia gibba HOM05D004179 ORTHO05D005248 2.9e-241 838.6 556 80.6
Atru.chr5.2582 Acer truncatum HOM05D004179 ORTHO05D005248 5.0e-241 837.8 588 76.7
Lsat_1_v5_gn_7_86320 Lactuca sativa HOM05D004179 ORTHO05D005248 6.5e-241 837.4 561 79.1
Phvul.007G039000 Phaseolus vulgaris HOM05D004179 ORTHO05D005248 6.5e-241 837.4 582 77.8
PSO541G5343 Papaver somniferum HOM05D004179 ORTHO05D005248 8.5e-241 837.0 551 80.6
BolC3t17326H Brassica oleracea HOM05D004179 ORTHO05D005248 1.5e-240 836.3 578 76.8
HanXRQChr16g0510101 Helianthus annuus HOM05D004179 ORTHO05D005248 4.2e-240 834.7 558 80.3
Peaxi162Scf00152g00232 Petunia axillaris HOM05D004179 ORTHO05D005248 4.2e-240 834.7 494 86.4
C03p50340 Brassica napus HOM05D004179 ORTHO05D005248 5.5e-240 834.3 577 76.4
AUR62039105 Chenopodium quinoa HOM05D004179 ORTHO05D005248 5.5e-240 834.3 554 79.6
A03p41230 Brassica napus HOM05D004179 ORTHO05D005248 9.4e-240 833.6 577 76.9
EL10Ac9g22290 Beta vulgaris HOM05D004179 ORTHO05D005248 1.2e-239 833.2 602 76.1
Cpa.g.sc106.85 Carica papaya HOM05D004179 ORTHO05D005248 2.7e-239 832.0 545 82.2
BcaC01g03629 Brassica carinata HOM05D004179 ORTHO05D005248 3.6e-239 831.6 577 76.3
BraA03t13276Z Brassica rapa HOM05D004179 ORTHO05D005248 4.7e-239 831.2 578 76.5
PSO675G3501 Papaver somniferum HOM05D004179 ORTHO05D005248 4.7e-239 831.2 549 80.3
ECA236G2359 Erigeron canadensis HOM05D004179 ORTHO05D005248 5.2e-238 827.8 535 80.4
Hund06333 Selenicereus undatus HOM05D004179 ORTHO05D005248 2.6e-237 825.5 572 77.6
CAN.G621.5 Capsicum annuum HOM05D004179 ORTHO05D005248 4.4e-237 824.7 558 78.0
FAN24G2682 Fragaria x ananassa HOM05D004179 ORTHO05D005248 4.4e-237 824.7 615 74.1
BcaB04g19041 Brassica carinata HOM05D004179 ORTHO05D005248 5.7e-237 824.3 580 75.7
DCAR_001640 Daucus carota HOM05D004179 ORTHO05D005248 9.8e-237 823.5 583 75.5
HanXRQChr04g0128091 Helianthus annuus HOM05D004179 ORTHO05D005248 9.8e-237 823.5 499 85.2
ATR0691G115 Amborella trichopoda HOM05D004179 ORTHO05D005248 4.8e-236 821.2 521 82.0
vmacro19521 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 1.4e-235 819.7 535 81.1
Ah.01g018160 Amaranthus hybridus HOM05D004179 ORTHO05D005248 2.0e-234 815.8 527 81.2
Actinidia17883 Actinidia chinensis HOM05D004179 ORTHO05D005248 7.7e-234 813.9 503 85.9
Cc02_g19190 Coffea canephora HOM05D004179 ORTHO05D005248 8.0e-231 803.9 578 77.2
RcHm_v2.0_Chr6g0255521 Rosa chinensis HOM05D004179 ORTHO05D005248 1.3e-228 796.6 504 82.1
Sc17g0003000 Simmondsia chinensis HOM05D004179 ORTHO05D005248 3.8e-225 785.0 516 80.8
HPP92_004767 Vanilla planifolia HOM05D004179 ORTHO05D005248 8.9e-222 773.9 591 71.2
RcHm_v2.0_Chr6g0255491 Rosa chinensis HOM05D004179 ORTHO05D005248 3.4e-221 771.9 466 85.0
Duzib052G0638 Durio zibethinus HOM05D004179 ORTHO05D005248 5.7e-221 771.2 497 81.7
Dinv15758 Davidia involucrata HOM05D004179 ORTHO05D005248 1.8e-219 766.1 433 90.5
SEGI_32792 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 2.7e-218 762.3 506 77.7
MELO3C019541.2 Cucumis melo HOM05D004179 ORTHO05D005248 6.2e-215 751.1 738 61.0
Duzib132G1089 Durio zibethinus HOM05D004179 ORTHO05D005248 4.1e-211 738.4 486 79.8
QL11p034034 Quercus lobata HOM05D004179 ORTHO05D005248 7.8e-210 734.2 436 86.5
Zm00001eb307330 Zea mays HOM05D004179 ORTHO05D005248 3.9e-209 731.9 456 81.6
Duzib052G0741 Durio zibethinus HOM05D004179 ORTHO05D005248 1.1e-206 723.8 581 70.2
QL11p034002 Quercus lobata HOM05D004179 ORTHO05D005248 1.8e-206 723.0 436 84.9
AagrBONN_evm.TU.Sc2ySwM_117.488 Anthoceros agrestis HOM05D004179 ORTHO05D005248 2.6e-205 719.2 526 71.5
Rhsim05G0087900 Rhododendron simsii HOM05D004179 ORTHO05D005248 3.4e-205 718.8 436 85.3
Mapoly0030s0013 Marchantia polymorpha HOM05D004179 ORTHO05D005248 4.4e-205 718.4 556 70.0
Hund00144 Selenicereus undatus HOM05D004179 ORTHO05D005248 2.1e-202 709.5 566 69.3
Pp3c12_4070 Physcomitrium patens HOM05D004179 ORTHO05D005248 1.6e-199 699.9 580 65.2
Pp3c4_21490 Physcomitrium patens HOM05D004179 ORTHO05D005248 2.0e-197 693.0 578 64.5
Nitab4.5_0001596g0010 Nicotiana tabacum HOM05D004179 ORTHO05D005248 6.9e-190 667.9 394 86.3
Duzib132G1182 Durio zibethinus HOM05D004179 ORTHO05D005248 1.2e-186 657.1 395 84.3
Glyma.20G129500 Glycine max HOM05D004179 ORTHO05D005248 3.5e-186 655.6 437 78.7
SMO347G0195 Selaginella moellendorffii HOM05D004179 ORTHO05D005248 6.9e-182 641.3 438 76.9
Thhalv10012248m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 9.0e-182 641.0 427 77.5
AT1G49810 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 7.6e-181 637.9 421 78.9
Ciclev10030164m.g Citrus clementina HOM05D004179 ORTHO05D005248 2.2e-180 636.3 389 84.1
Os09g0109800 Oryza sativa ssp. japonica HOM05D004179 ORTHO05D005248 8.4e-180 634.4 404 80.7
CSS0041442 Camellia sinensis var. sinensis HOM05D004179 ORTHO05D005248 3.2e-179 632.5 447 77.6
VMungo0720G0258 Vigna mungo HOM05D004179 ORTHO05D005248 1.3e-177 627.1 420 77.9
AL1G57290 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 5.1e-177 625.2 425 76.0
BcaC05g28472 Brassica carinata HOM05D004179 ORTHO05D005248 4.6e-170 602.1 581 60.2
MD05G1088200 Malus domestica HOM05D004179 ORTHO05D005248 4.5e-165 585.5 468 69.7
CDE04G0108 Ceratophyllum demersum HOM05D004179 ORTHO05D005248 5.1e-153 545.4 584 56.3
CsaV3_3G018250 Cucumis sativus L. HOM05D004179 ORTHO05D005248 2.8e-151 539.7 386 76.9
vmacro23441 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 6.9e-150 535.0 443 67.7
BcaB06g26006 Brassica carinata HOM05D004179 ORTHO05D005248 1.3e-148 530.8 314 85.7
Eucgr.H03221 Eucalyptus grandis HOM05D004179 ORTHO05D005248 2.4e-142 510.0 452 66.2
CiPaw.06G169900 Carya illinoinensis HOM05D004179 ORTHO05D005248 3.1e-134 483.0 299 82.6
Carub.0001s3900 Capsella rubella HOM05D004179 ORTHO05D005248 1.2e-133 481.1 354 69.8
Dinv42185 Davidia involucrata HOM05D004179 ORTHO05D005248 3.7e-127 459.5 306 83.0
MBI16_g34668_MAGBIO Magnolia biondii HOM05D004179 ORTHO05D005248 2.9e-124 449.9 269 84.8
Cre09.g395288 Chlamydomonas reinhardtii HOM05D004179 ORTHO05D005248 2.5e-123 446.8 523 48.4
RcHm_v2.0_Chr6g0255461 Rosa chinensis HOM05D004179 ORTHO05D005248 6.1e-122 442.2 284 81.3
Nitab4.5_0001539g0020 Nicotiana tabacum HOM05D004179 ORTHO05D005248 3.0e-121 439.9 259 85.3
Actinidia27968 Actinidia chinensis HOM05D004179 ORTHO05D005248 1.6e-90 337.8 484 47.1
Sabra16G0189200 Salix brachista HOM05D004179 ORTHO05D005248 3.9e-84 316.6 579 41.6
SEGI_35862 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 1.9e-78 297.7 213 69.5
Glyma.10G261350 Glycine max HOM05D004179 ORTHO05D005248 5.6e-75 286.2 188 76.1
CBR_g29563 Chara braunii HOM05D004179 ORTHO05D005248 7.1e-70 269.2 285 55.8
Glyma.20G127600 Glycine max HOM05D004179 ORTHO05D005248 1.3e-68 265.0 196 73.5
HanXRQChr02g0055551 Helianthus annuus HOM05D004179 ORTHO05D005248 8.1e-58 229.2 144 81.9
SEGI_39751 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 1.6e-53 214.9 202 56.9
CBR_g39138 Chara braunii HOM05D004179 ORTHO05D005248 2.3e-52 211.1 193 57.5
TPR.G27121 Trifolium pratense HOM05D004179 ORTHO05D005248 2.6e-48 197.6 126 79.4
RcHm_v2.0_Chr6g0255471 Rosa chinensis HOM05D004179 ORTHO05D005248 3.4e-48 197.2 119 84.9
Hund13342 Selenicereus undatus HOM05D004179 ORTHO05D005248 7.4e-35 152.9 111 72.1
Hund09393 Selenicereus undatus HOM05D004179 ORTHO05D005248 6.3e-34 149.8 190 50.0
SEGI_40595 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 1.2e-32 145.6 88 77.3
arahy.Tifrunner.gnm1.ann1.38ITRC Arachis hypogaea HOM05D000846 ORTHO05D021490 1.7e-31 141.7 109 76.1
BcaB01g01792 Brassica carinata HOM05D002587 ORTHO05D002778 1.8e-28 131.7 158 54.4
HanXRQChr02g0055561 Helianthus annuus HOM05D004179 ORTHO05D021490 3.7e-26 124.0 78 85.9
Manes.04G059624 Manihot esculenta HOM05D004179 ORTHO05D021490 3.7e-26 124.0 69 88.4
PSO832G1539 Papaver somniferum HOM05D000003 ORTHO05D000004 9.1e-25 119.4 97 66.0
TPR.G23074 Trifolium pratense HOM05D001509 ORTHO05D001361 1.7e-23 115.2 79 75.9
CBR_g29562 Chara braunii HOM05D004179 ORTHO05D005248 2.5e-22 111.3 93 59.1
MD05G1088300 Malus domestica HOM05D004179 ORTHO05D005248 3.0e-20 104.4 68 76.5
arahy.Tifrunner.gnm1.ann1.38IWEY Arachis hypogaea HOM05D004179 ORTHO05D005248 4.4e-19 100.5 61 83.6
arahy.Tifrunner.gnm1.ann1.JR6IQW Arachis hypogaea HOM05D004179 ORTHO05D021490 7.7e-16 89.7 53 86.8
CARHR039870 Cardamine hirsuta HOM05D004179 ORTHO05D021490 1.4e-12 79.0 58 70.7
BcaC02g11330 Brassica carinata HOM05D004179 ORTHO05D092784 1.8e-12 78.6 141 36.9
HanXRQChr04g0106691 Helianthus annuus HOM05D004179 ORTHO05D020814 2.2e-10 71.6 49 69.4
SMO199G0121 Selaginella moellendorffii HOM05D004179 ORTHO05D374621 5.3e-09 67.0 93 47.3
VMungo1215G0907 Vigna mungo HOM05D004179 ORTHO05D020814 2.9e-07 61.2 52 57.7
Hund25982 Selenicereus undatus HOM05D004179 ORTHO05D021490 3.8e-07 60.8 39 82.1
VMungo0720G0416 Vigna mungo HOM05D004179 ORTHO05D020814 3.8e-07 60.8 52 55.8


User provided reference genes

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