Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G1222 Cannabis sativa HOM05D000267 ORTHO05D009944 4.1e-292 1007.3 499 100.0
Prupe.8G168300 Prunus persica HOM05D000267 ORTHO05D009944 6.1e-203 711.1 482 73.0
QL11p051524 Quercus lobata HOM05D000267 ORTHO05D009944 2.0e-193 679.5 481 71.5
TWI79G0018 Tripterygium wilfordii HOM05D000267 ORTHO05D009944 5.8e-193 677.9 478 67.2
MD05G1124600 Malus domestica HOM05D000267 ORTHO05D009944 2.7e-190 669.1 484 67.8
FAN20G0365 Fragaria x ananassa HOM05D000267 ORTHO05D009944 3.5e-190 668.7 489 67.5
Thecc.02G056000 Theobroma cacao HOM05D000267 ORTHO05D009944 4.6e-190 668.3 460 68.9
CSS0022193 Camellia sinensis var. sinensis HOM05D000267 ORTHO05D009944 1.3e-189 666.8 429 73.4
TAR628G1652 Trochodendron aralioides HOM05D000267 ORTHO05D009944 2.3e-189 666.0 429 73.0
Dinv41920 Davidia involucrata HOM05D000267 ORTHO05D002764 1.1e-188 663.7 476 68.3
FvH4_2g15600 Fragaria vesca HOM05D000267 ORTHO05D009944 1.5e-188 663.3 487 67.6
Hma1.2p1_0163F.1_g072670 Hydrangea macrophylla HOM05D000267 ORTHO05D009944 1.8e-186 656.4 425 72.9
CiPaw.05G084800 Carya illinoinensis HOM05D000267 ORTHO05D009944 4.4e-185 651.7 510 64.3
Manes.11G097600 Manihot esculenta HOM05D000267 ORTHO05D009944 4.4e-185 651.7 423 71.2
Gorai.008G037400 Gossypium raimondii HOM05D000267 ORTHO05D009944 5.8e-185 651.4 423 70.4
CsaV3_2G016240 Cucumis sativus L. HOM05D000267 ORTHO05D009944 1.1e-183 647.1 423 69.5
Actinidia18043 Actinidia chinensis HOM05D000267 ORTHO05D002764 3.2e-183 645.6 429 70.4
Cfa005283 Carpinus fangiana HOM05D000267 ORTHO05D002764 5.4e-183 644.8 453 71.5
Gohir.D12G036200 Gossypium hirsutum HOM05D000267 ORTHO05D009944 9.2e-183 644.0 423 70.0
Duzib132G0985 Durio zibethinus HOM05D000267 ORTHO05D009944 6.6e-181 637.9 423 69.7
Rhsim11G0193400 Rhododendron simsii HOM05D000267 ORTHO05D009944 6.6e-181 637.9 520 62.9
Atru.chr5.3400 Acer truncatum HOM05D000267 ORTHO05D009944 1.9e-180 636.3 484 67.1
ClCG02G012080 Citrullus lanatus HOM05D000267 ORTHO05D009944 3.6e-179 632.1 466 64.6
GSVIVG01023990001 Vitis vinifera HOM05D000267 ORTHO05D009944 1.1e-178 630.6 455 67.0
COL.COLO4_17372 Corchorus olitorius HOM05D000267 ORTHO05D009944 1.4e-178 630.2 460 67.4
FAN24G1303 Fragaria x ananassa HOM05D000267 ORTHO05D009944 9.9e-177 624.0 581 57.0
THA.LOC104807804 Tarenaya hassleriana HOM05D000267 ORTHO05D009944 3.7e-176 622.1 424 67.0
EL10Ac9g21344 Beta vulgaris HOM05D000267 ORTHO05D009944 5.4e-175 618.2 427 69.1
Potri.004G177400 Populus trichocarpa HOM05D000267 ORTHO05D009944 9.2e-175 617.5 423 66.9
Migut.B00061 Erythranthe guttata HOM05D000267 ORTHO05D009944 1.6e-174 616.7 429 66.9
Ciclev10028457m.g Citrus clementina HOM05D000267 ORTHO05D009944 2.7e-174 615.9 421 70.3
Sc14g0002320 Simmondsia chinensis HOM05D000267 ORTHO05D009944 1.4e-170 603.6 424 66.7
MBI05_g00165_MAGBIO Magnolia biondii HOM05D000267 ORTHO05D009944 4.0e-170 602.1 434 65.7
FAN27G0796 Fragaria x ananassa HOM05D000267 ORTHO05D009944 2.0e-169 599.7 540 59.1
AUR62010015 Chenopodium quinoa HOM05D000267 ORTHO05D009944 2.6e-169 599.4 427 66.5
Eucgr.I01454 Eucalyptus grandis HOM05D000267 ORTHO05D009944 9.9e-169 597.4 476 59.5
vmacro02289 Vaccinium macrocarpon HOM05D000267 ORTHO05D009944 2.2e-168 596.3 393 71.5
AUR62013005 Chenopodium quinoa HOM05D000267 ORTHO05D009944 9.3e-167 590.9 465 61.9
Cpa.g.sc20.108 Carica papaya HOM05D000267 ORTHO05D009944 3.0e-165 585.9 480 59.8
Cc09_g10270 Coffea canephora HOM05D000267 ORTHO05D009944 1.6e-163 580.1 431 64.5
Sed0004064 Sechium edule HOM05D000267 ORTHO05D009944 6.2e-163 578.2 461 60.7
AagrBONN_evm.TU.Sc2ySwM_344.2069 Anthoceros agrestis HOM05D000267 ORTHO05D009944 5.3e-162 575.1 464 56.2
FAN15G3022 Fragaria x ananassa HOM05D000267 ORTHO05D009944 4.2e-159 565.5 505 60.2
SMO367G0708 Selaginella moellendorffii HOM05D000267 ORTHO05D009944 4.2e-159 565.5 434 59.9
MELO3C020832.2 Cucumis melo HOM05D000267 ORTHO05D009944 6.0e-158 561.6 454 59.9
Nitab4.5_0000079g0250 Nicotiana tabacum HOM05D000267 ORTHO05D000298 7.9e-158 561.2 429 62.0
ATR0661G537 Amborella trichopoda HOM05D000267 ORTHO05D009944 1.3e-157 560.5 434 61.5
Pp3c3_37260 Physcomitrium patens HOM05D000267 ORTHO05D009944 3.0e-157 559.3 434 59.2
Nn5g30837 Nelumbo nucifera HOM05D000267 ORTHO05D009944 5.1e-157 558.5 385 67.8
Mapoly0001s0154 Marchantia polymorpha HOM05D000267 ORTHO05D009944 1.1e-156 557.4 434 59.9
AUR62015150 Chenopodium quinoa HOM05D000267 ORTHO05D009944 1.6e-155 553.5 427 63.0
Haze_02110 Corylus avellana HOM05D000267 ORTHO05D009944 2.0e-153 546.6 467 63.0
Nitab4.5_0007484g0010 Nicotiana tabacum HOM05D000267 ORTHO05D009944 3.2e-151 539.3 483 55.9
Gohir.A12G036400 Gossypium hirsutum HOM05D000267 ORTHO05D009944 6.5e-144 515.0 349 67.9
Os04g0560500 Oryza sativa ssp. japonica HOM05D000267 ORTHO05D009944 1.5e-140 503.8 439 52.2
SalBow1G0833 Salvia bowleyana HOM05D000267 ORTHO05D009944 1.5e-140 503.8 384 61.2
Oeu015554.3 Olea europaea HOM05D000267 ORTHO05D002764 8.4e-136 488.0 331 69.5
Zm00001eb074100 Zea mays HOM05D000267 ORTHO05D009944 3.0e-125 453.0 422 49.1
RcHm_v2.0_Chr6g0278781 Rosa chinensis HOM05D000267 ORTHO05D009944 3.3e-124 449.5 326 70.2
Pp3c21_13310 Physcomitrium patens HOM05D000267 ORTHO05D009944 1.4e-109 401.0 457 44.2
Ah.01g023200 Amaranthus hybridus HOM05D000267 ORTHO05D009944 1.0e-104 384.8 314 58.0
Atru.chr5.3388 Acer truncatum HOM05D000267 ORTHO05D009944 7.2e-103 378.6 371 53.4
Cre13.g587500 Chlamydomonas reinhardtii HOM05D000267 ORTHO05D009944 2.1e-94 350.5 435 41.4
HPP92_001748 Vanilla planifolia HOM05D000267 ORTHO05D009944 7.5e-92 342.0 265 58.9
Cre17.g719500 Chlamydomonas reinhardtii HOM05D000267 ORTHO05D009944 6.1e-86 322.4 455 40.7
RcHm_v2.0_Chr6g0255801 Rosa chinensis HOM05D000267 ORTHO05D009944 8.9e-85 318.5 274 61.3
MCO05G576 Micromonas commoda HOM05D000267 ORTHO05D009944 1.7e-75 287.7 478 36.0
Peaxi162Scf00078g01332 Petunia axillaris HOM05D000267 ORTHO05D009944 9.2e-74 282.0 246 58.1
AagrBONN_evm.TU.Sc2ySwM_228.1198 Anthoceros agrestis HOM05D000267 ORTHO05D009944 3.5e-65 253.4 305 42.6
Atru.chr5.3392 Acer truncatum HOM05D000267 ORTHO05D009944 8.9e-61 238.8 244 50.8
Actinidia20524 Actinidia chinensis HOM05D000267 ORTHO05D002764 1.2e-60 238.4 370 42.2
MCO05G735 Micromonas commoda HOM05D000267 ORTHO05D009944 2.4e-58 230.7 449 34.5
Hund06449 Selenicereus undatus HOM05D000267 ORTHO05D009944 8.7e-48 195.7 152 59.9
SEGI_17018 Sequoiadendron giganteum HOM05D000267 ORTHO05D009944 8.7e-48 195.7 199 47.7
PRCOL_00001600 Prasinoderma coloniale HOM05D000267 ORTHO05D009944 1.9e-47 194.5 466 30.5
RcHm_v2.0_Chr6g0278801 Rosa chinensis HOM05D000267 ORTHO05D009944 1.8e-45 188.0 129 66.7
SEGI_10216 Sequoiadendron giganteum HOM05D000267 ORTHO05D009944 2.3e-32 144.4 189 34.9
RcHm_v2.0_Chr6g0255791 Rosa chinensis HOM05D000267 ORTHO05D009944 3.7e-30 137.1 91 71.4
Lj9A400T56 Lonicera japonica HOM05D000267 ORTHO05D009944 7.1e-26 122.9 74 79.7
Thecc.02G059600 Theobroma cacao HOM05D000267 ORTHO05D009944 1.8e-21 108.2 104 56.7
Sabra04G0119300 Salix brachista HOM05D000267 ORTHO05D009944 1.0e-19 102.4 81 54.3
Peaxi162Scf00078g01331 Petunia axillaris HOM05D000267 ORTHO05D009944 1.1e-18 99.0 67 62.7
RcHm_v2.0_Chr2g0123001 Rosa chinensis HOM05D000267 ORTHO05D009944 3.9e-16 90.5 70 64.3
SEGI_37732 Sequoiadendron giganteum HOM05D000267 ORTHO05D009944 1.5e-15 88.6 94 45.7
SEGI_00421 Sequoiadendron giganteum HOM05D000267 ORTHO05D009944 2.8e-14 84.3 117 34.2
Cre07.g314150 Chlamydomonas reinhardtii HOM05D002360 ORTHO05D006297 1.9e-10 71.6 477 21.0
vmacro02288 Vaccinium macrocarpon HOM05D000267 ORTHO05D009944 2.0e-07 61.6 72 50.0


User provided reference genes

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