Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G1088 Cannabis sativa HOM05D004634 ORTHO05D005502 1.0e-157 560.1 294 100.0
QL11p051507 Quercus lobata HOM05D004634 ORTHO05D005502 3.4e-116 422.2 300 75.7
MD05G1124500 Malus domestica HOM05D004634 ORTHO05D005502 1.6e-113 413.3 295 75.3
Cfa005282 Carpinus fangiana HOM05D004634 ORTHO05D005502 2.0e-113 412.9 294 75.5
COL.COLO4_17371 Corchorus olitorius HOM05D004634 ORTHO05D005502 6.5e-112 407.9 291 76.3
MD10G1127300 Malus domestica HOM05D004634 ORTHO05D005502 1.6e-110 403.3 295 73.6
Prupe.8G168200 Prunus persica HOM05D004634 ORTHO05D005502 1.6e-110 403.3 278 77.0
CiPaw.06G120500 Carya illinoinensis HOM05D004634 ORTHO05D005502 2.1e-110 402.9 294 74.5
FAN15G1522 Fragaria x ananassa HOM05D004634 ORTHO05D005502 2.7e-110 402.5 294 75.2
FAN24G0083 Fragaria x ananassa HOM05D004634 ORTHO05D005502 4.7e-110 401.7 294 75.2
RcHm_v2.0_Chr6g0278771 Rosa chinensis HOM05D004634 ORTHO05D005502 6.1e-110 401.4 294 74.1
CiPaw.05G084700 Carya illinoinensis HOM05D004634 ORTHO05D005502 8.0e-110 401.0 294 74.1
FAN20G2203 Fragaria x ananassa HOM05D004634 ORTHO05D005502 8.0e-110 401.0 294 75.2
Ciclev10028955m.g Citrus clementina HOM05D004634 ORTHO05D005502 6.8e-109 397.9 295 74.9
Cpa.g.sc20.107 Carica papaya HOM05D004634 ORTHO05D005502 1.2e-108 397.1 298 72.1
FAN27G3200 Fragaria x ananassa HOM05D004634 ORTHO05D005502 1.2e-108 397.1 294 74.8
Hma1.2p1_0163F.1_g072640 Hydrangea macrophylla HOM05D004634 ORTHO05D005502 5.7e-108 394.8 299 71.9
Potri.004G177300 Populus trichocarpa HOM05D004634 ORTHO05D005502 7.5e-108 394.4 297 75.8
Potri.009G137600 Populus trichocarpa HOM05D004634 ORTHO05D005502 2.8e-107 392.5 299 73.9
FvH4_2g15590 Fragaria vesca HOM05D004634 ORTHO05D005502 4.9e-107 391.7 309 71.5
Atru.chr5.3387 Acer truncatum HOM05D004634 ORTHO05D005502 8.3e-107 391.0 296 72.3
Dinv14123 Davidia involucrata HOM05D004634 ORTHO05D005502 2.4e-106 389.4 299 70.9
Gohir.D12G036100 Gossypium hirsutum HOM05D004634 ORTHO05D005502 2.4e-106 389.4 293 73.4
Gohir.A12G036500 Gossypium hirsutum HOM05D004634 ORTHO05D005502 3.1e-106 389.0 293 73.7
Sabra09G0106800 Salix brachista HOM05D004634 ORTHO05D005502 5.4e-106 388.3 299 73.6
TWI31G0086 Tripterygium wilfordii HOM05D004634 ORTHO05D005502 5.4e-106 388.3 296 71.6
Ca_03299_v3 Cicer arietinum L. HOM05D004634 ORTHO05D005502 1.2e-105 387.1 296 72.3
Sabra04G0119200 Salix brachista HOM05D004634 ORTHO05D005502 1.6e-105 386.7 297 73.7
Gorai.008G037300 Gossypium raimondii HOM05D004634 ORTHO05D005502 2.0e-105 386.3 293 73.0
Duzib052G0999 Durio zibethinus HOM05D004634 ORTHO05D005502 2.7e-105 386.0 293 71.7
Actinidia21473 Actinidia chinensis HOM05D004634 ORTHO05D005502 7.7e-105 384.4 297 71.0
Dinv41921 Davidia involucrata HOM05D004634 ORTHO05D005502 7.7e-105 384.4 299 69.9
Aqoxy6G02026 Aquilegia oxysepala HOM05D004634 ORTHO05D005502 1.3e-104 383.6 303 69.3
Manes.11G097500 Manihot esculenta HOM05D004634 ORTHO05D005502 2.3e-104 382.9 294 70.4
Phvul.007G018100 Phaseolus vulgaris HOM05D004634 ORTHO05D005502 5.0e-104 381.7 294 71.1
Gohir.A01G170200 Gossypium hirsutum HOM05D004634 ORTHO05D005502 6.6e-104 381.3 295 71.5
VMungo0720G0537 Vigna mungo HOM05D004634 ORTHO05D005502 6.6e-104 381.3 293 71.3
Hma1.2p1_0032F.1_g019265 Hydrangea macrophylla HOM05D004634 ORTHO05D005502 1.1e-103 380.6 311 69.1
Gohir.D01G161300 Gossypium hirsutum HOM05D004634 ORTHO05D005502 1.5e-103 380.2 295 71.5
Gorai.002G199900 Gossypium raimondii HOM05D004634 ORTHO05D005502 1.5e-103 380.2 295 71.5
Manes.04G071300 Manihot esculenta HOM05D004634 ORTHO05D005502 1.5e-103 380.2 293 70.3
ClCG02G012070 Citrullus lanatus HOM05D004634 ORTHO05D005502 3.3e-103 379.0 297 69.7
Thecc.02G056100 Theobroma cacao HOM05D004634 ORTHO05D005502 3.3e-103 379.0 278 74.1
ClCG02G003930 Citrullus lanatus HOM05D004634 ORTHO05D005502 5.6e-103 378.3 292 70.2
PGR042G2401 Punica granatum HOM05D004634 ORTHO05D005502 7.3e-103 377.9 294 72.8
Glyma.20G106600 Glycine max HOM05D004634 ORTHO05D005502 1.6e-102 376.7 292 72.3
Actinidia20523 Actinidia chinensis HOM05D004634 ORTHO05D005502 8.0e-102 374.4 237 82.3
Eucgr.G01787 Eucalyptus grandis HOM05D004634 ORTHO05D005502 1.4e-101 373.6 310 67.4
Lalb_Chr21g0307021 Lupinus albus HOM05D004634 ORTHO05D005502 1.4e-101 373.6 296 68.2
Sed0005362 Sechium edule HOM05D004634 ORTHO05D005502 1.4e-101 373.6 295 69.8
Glyma.10G283100 Glycine max HOM05D004634 ORTHO05D005502 1.8e-101 373.2 293 71.7
Duzib132G0372 Durio zibethinus HOM05D004634 ORTHO05D005502 2.3e-101 372.9 295 70.8
Lj5g0018549 Lotus japonicus HOM05D004634 ORTHO05D005502 2.3e-101 372.9 295 69.5
AUR62010016 Chenopodium quinoa HOM05D004634 ORTHO05D005502 3.0e-101 372.5 296 70.6
CSS0049403 Camellia sinensis var. sinensis HOM05D004634 ORTHO05D005502 5.2e-101 371.7 297 68.7
Nitab4.5_0003698g0030 Nicotiana tabacum HOM05D004634 ORTHO05D005502 6.8e-101 371.3 306 68.3
arahy.Tifrunner.gnm1.ann1.X9NSEY Arachis hypogaea HOM05D004634 ORTHO05D005502 1.2e-100 370.5 312 67.6
Sed0028226 Sechium edule HOM05D004634 ORTHO05D005502 2.6e-100 369.4 292 68.5
arahy.Tifrunner.gnm1.ann1.1RV92X Arachis hypogaea HOM05D004634 ORTHO05D005502 4.4e-100 368.6 312 67.3
AUR62013006 Chenopodium quinoa HOM05D004634 ORTHO05D005502 4.4e-100 368.6 296 69.6
Psat6g232600 Pisum sativum HOM05D004634 ORTHO05D005502 5.7e-100 368.2 298 69.1
Peaxi162Scf00362g00529 Petunia axillaris HOM05D004634 ORTHO05D005502 7.5e-100 367.9 302 69.2
Migut.B00062 Erythranthe guttata HOM05D004634 ORTHO05D005502 9.8e-100 367.5 298 68.8
Sopen01g053790 Solanum pennellii HOM05D004634 ORTHO05D005502 1.7e-99 366.7 302 68.2
Duzib248G1349 Durio zibethinus HOM05D004634 ORTHO05D005502 3.7e-99 365.5 273 72.9
CSS0014782 Camellia sinensis var. sinensis HOM05D004634 ORTHO05D005502 1.8e-98 363.2 295 68.5
Medtr1g112860 Medicago truncatula HOM05D004634 ORTHO05D005502 2.4e-98 362.8 292 69.2
TWI79G0300 Tripterygium wilfordii HOM05D004634 ORTHO05D005502 5.4e-98 361.7 294 69.0
EL10Ac9g21345 Beta vulgaris HOM05D004634 ORTHO05D005502 7.0e-98 361.3 295 69.2
TAR381G1727 Trochodendron aralioides HOM05D004634 ORTHO05D005502 1.6e-97 360.1 285 68.4
vmacro17321 Vaccinium macrocarpon HOM05D004634 ORTHO05D005502 2.7e-97 359.4 298 66.1
MELO3C013335.2 Cucumis melo HOM05D004634 ORTHO05D005502 5.9e-97 358.2 292 67.8
Rhsim11G0193300 Rhododendron simsii HOM05D004634 ORTHO05D005502 5.9e-97 358.2 296 67.6
TPR.G2419 Trifolium pratense HOM05D004634 ORTHO05D005502 3.9e-96 355.5 235 80.0
GSVIVG01023991001 Vitis vinifera HOM05D004634 ORTHO05D005502 3.3e-95 352.4 220 83.6
Ah.01g023190 Amaranthus hybridus HOM05D004634 ORTHO05D005502 4.3e-95 352.1 296 64.9
Hund06448 Selenicereus undatus HOM05D004634 ORTHO05D005502 5.6e-95 351.7 294 66.7
Rhsim05G0053200 Rhododendron simsii HOM05D004634 ORTHO05D005502 8.0e-94 347.8 298 66.1
Nn5g30833 Nelumbo nucifera HOM05D004634 ORTHO05D005502 2.3e-93 346.3 300 68.3
ECA246G0918 Erigeron canadensis HOM05D004634 ORTHO05D005502 3.1e-93 345.9 308 65.9
Solyc01g111750.4 Solanum lycopersicum HOM05D004634 ORTHO05D005502 5.2e-93 345.1 297 65.7
SGA_v2.0_scaffold58G20350 Striga asiatica HOM05D004634 ORTHO05D005502 6.8e-93 344.7 295 65.4
MBI05_g00175_MAGBIO Magnolia biondii HOM05D004634 ORTHO05D005502 8.9e-93 344.4 230 77.0
PGSC0003DMG400018041 Solanum tuberosum HOM05D004634 ORTHO05D005502 2.0e-92 343.2 291 66.7
MSTRG.19978 Avicennia marina HOM05D004634 ORTHO05D005502 2.6e-92 342.8 338 59.5
THA.LOC104824757 Tarenaya hassleriana HOM05D004634 ORTHO05D005502 3.4e-92 342.4 298 64.1
THA.LOC104804086 Tarenaya hassleriana HOM05D004634 ORTHO05D005502 1.7e-91 340.1 294 63.9
CAN.G588.96 Capsicum annuum HOM05D004634 ORTHO05D005502 3.2e-90 335.9 218 80.7
vmacro02287 Vaccinium macrocarpon HOM05D004634 ORTHO05D005502 1.6e-89 333.6 308 60.4
PSO210G1566 Papaver somniferum HOM05D004634 ORTHO05D005502 2.7e-89 332.8 267 68.9
HanXRQChr17g0544171 Helianthus annuus HOM05D004634 ORTHO05D005502 3.5e-89 332.4 220 79.5
PSO170G0173 Papaver somniferum HOM05D004634 ORTHO05D005502 4.6e-89 332.0 299 62.9
MELO3C020831.2 Cucumis melo HOM05D004634 ORTHO05D005502 1.3e-88 330.5 278 66.9
Migut.N01330 Erythranthe guttata HOM05D004634 ORTHO05D005502 3.9e-88 328.9 304 61.2
DCAR_003183 Daucus carota HOM05D004634 ORTHO05D005502 8.6e-88 327.8 283 65.4
Carub.0004s0001 Capsella rubella HOM05D004634 ORTHO05D005502 1.5e-87 327.0 298 64.1
Oeu015555.1 Olea europaea HOM05D004634 ORTHO05D005502 4.3e-87 325.5 297 63.3
CDE05G0405 Ceratophyllum demersum HOM05D004634 ORTHO05D005502 1.6e-86 323.6 258 67.4
AL4G10040 Arabidopsis lyrata HOM05D004634 ORTHO05D005502 3.6e-86 322.4 296 62.8
CsaV3_2G016230 Cucumis sativus L. HOM05D004634 ORTHO05D005502 3.6e-86 322.4 265 67.2
AT2G20920 Arabidopsis thaliana HOM05D004634 ORTHO05D005502 6.2e-86 321.6 299 63.2
Lj9A400T59 Lonicera japonica HOM05D004634 ORTHO05D005502 6.2e-86 321.6 297 59.6
Ah.01g008170 Amaranthus hybridus HOM05D004634 ORTHO05D005502 1.1e-85 320.9 239 70.7
Sp4g00110 Schrenkiella parvula HOM05D004634 ORTHO05D005502 1.8e-85 320.1 299 63.2
Cc09_g10260 Coffea canephora HOM05D004634 ORTHO05D005502 3.1e-85 319.3 220 77.7
Aa31LG7G15710 Aethionema arabicum HOM05D004634 ORTHO05D005502 6.8e-85 318.2 258 68.6
Zm00001eb003030 Zea mays HOM05D004634 ORTHO05D005502 2.0e-84 316.6 234 68.8
CARHR111820 Cardamine hirsuta HOM05D004634 ORTHO05D005502 2.6e-84 316.2 298 62.8
unitig_744.g24280 Utricularia gibba HOM05D004634 ORTHO05D005502 3.4e-84 315.8 220 75.0
Aa31LG6G16660 Aethionema arabicum HOM05D004634 ORTHO05D005502 1.7e-83 313.5 295 60.3
Zm00001eb402730 Zea mays HOM05D004634 ORTHO05D005502 2.9e-83 312.8 234 67.1
CDE05G2434 Ceratophyllum demersum HOM05D004634 ORTHO05D005502 6.4e-83 311.6 232 70.7
Thhalv10000275m.g Eutrema salsugineum HOM05D004634 ORTHO05D005502 8.3e-83 311.2 230 73.5
BcaB01g02957 Brassica carinata HOM05D004634 ORTHO05D005502 1.4e-82 310.5 296 60.8
HPP92_001746 Vanilla planifolia HOM05D004634 ORTHO05D005502 1.0e-80 304.3 231 67.1
BcaC01g04857 Brassica carinata HOM05D004634 ORTHO05D005502 3.9e-80 302.4 233 70.8
BolC3t15633H Brassica oleracea HOM05D004634 ORTHO05D005502 3.9e-80 302.4 233 70.8
A03p27430 Brassica napus HOM05D004634 ORTHO05D005502 1.9e-79 300.1 230 70.4
C03p33070 Brassica napus HOM05D004634 ORTHO05D005502 1.9e-79 300.1 233 70.4
BraA03t11955Z Brassica rapa HOM05D004634 ORTHO05D005502 1.9e-79 300.1 230 70.4
Nn6g31925 Nelumbo nucifera HOM05D004634 ORTHO05D005502 1.6e-78 297.0 228 69.7
Lsat_1_v5_gn_3_47561 Lactuca sativa HOM05D004634 ORTHO05D005502 6.2e-78 295.0 203 76.8
TAR376G0880 Trochodendron aralioides HOM05D004634 ORTHO05D005502 2.2e-75 286.6 255 65.1
Os03g0137300 Oryza sativa ssp. japonica HOM05D004634 ORTHO05D005502 2.9e-75 286.2 208 67.8
PSO541G4751 Papaver somniferum HOM05D004634 ORTHO05D005502 1.1e-74 284.3 245 63.3
ATR0661G512 Amborella trichopoda HOM05D004634 ORTHO05D005502 1.9e-74 283.5 205 71.2
Lj5A177T58 Lonicera japonica HOM05D004634 ORTHO05D005502 1.9e-74 283.5 272 62.9
Haze_02111 Corylus avellana HOM05D004634 ORTHO05D005502 2.8e-70 269.6 182 75.8
PSO675G7052 Papaver somniferum HOM05D004634 ORTHO05D005502 1.1e-69 267.7 244 60.2
Sc18g0006360 Simmondsia chinensis HOM05D004634 ORTHO05D005502 3.1e-69 266.2 241 60.6
TAR381G0316 Trochodendron aralioides HOM05D004634 ORTHO05D005502 1.1e-66 257.7 171 77.8
Mapoly0158s0035 Marchantia polymorpha HOM05D004634 ORTHO05D005502 6.0e-65 251.9 255 54.5
AagrBONN_evm.TU.Sc2ySwM_344.2768 Anthoceros agrestis HOM05D004634 ORTHO05D005502 5.6e-63 245.4 288 51.0
Pp3c10_20920 Physcomitrium patens HOM05D004634 ORTHO05D005502 2.8e-62 243.0 241 56.8
Pp3c20_20480 Physcomitrium patens HOM05D004634 ORTHO05D005502 1.5e-60 237.3 244 55.7
Lj9A397T37 Lonicera japonica HOM05D004634 ORTHO05D005502 2.1e-57 226.9 181 64.6
Actinidia32031 Actinidia chinensis HOM05D004634 ORTHO05D005502 4.8e-54 215.7 143 77.6
SMO356G0675 Selaginella moellendorffii HOM05D004634 ORTHO05D005502 1.2e-49 201.1 235 49.8
CBR_g40579 Chara braunii HOM05D004634 ORTHO05D000002 2.7e-49 199.9 256 41.8
Atru.chr5.3399 Acer truncatum HOM05D004634 ORTHO05D005502 6.7e-48 195.3 175 63.4
Actinidia18044 Actinidia chinensis HOM05D004634 ORTHO05D005502 6.9e-45 185.3 157 64.3
DCAR_003186 Daucus carota HOM05D004634 ORTHO05D005502 2.7e-41 173.3 113 77.0
ECA246G0196 Erigeron canadensis HOM05D004634 ORTHO05D005502 2.8e-38 163.3 121 73.6
Sed0025180 Sechium edule HOM05D004634 ORTHO05D005502 2.2e-35 153.7 234 44.9
Actinidia37338 Actinidia chinensis HOM05D004634 ORTHO05D005502 3.2e-34 149.8 94 80.9
Oeu029649.1 Olea europaea HOM05D004634 ORTHO05D005502 3.6e-33 146.4 118 64.4
MCO05G599 Micromonas commoda HOM05D004634 ORTHO05D005502 2.8e-30 136.7 235 37.4
CsaV3_7G001200 Cucumis sativus L. HOM05D004634 ORTHO05D005502 8.2e-30 135.2 157 53.5
Cre03.g190150 Chlamydomonas reinhardtii HOM05D004634 ORTHO05D005502 1.4e-24 117.9 269 33.5
Actinidia32030 Actinidia chinensis HOM05D004634 ORTHO05D005502 1.1e-21 108.2 122 55.7
CsaV3_7G001190 Cucumis sativus L. HOM05D004634 ORTHO05D005502 5.9e-20 102.4 63 85.7
Dinv01013 Davidia involucrata HOM05D004634 ORTHO05D005502 1.2e-09 68.2 58 69.0
Pp3c11_16200 Physcomitrium patens HOM05D000764 ORTHO05D002819 2.7e-09 67.0 255 26.3
AUR62032163 Chenopodium quinoa HOM05D000764 ORTHO05D002819 1.4e-08 64.7 220 27.3
BcaC07g41182 Brassica carinata HOM05D004634 ORTHO05D005502 1.8e-08 64.3 60 56.7
Hund02536 Selenicereus undatus HOM05D000764 ORTHO05D002819 3.0e-08 63.5 191 27.2
Pp3c15_20170 Physcomitrium patens HOM05D000764 ORTHO05D002819 4.0e-08 63.2 208 28.8
TWI60G0248 Tripterygium wilfordii HOM05D000764 ORTHO05D002819 4.0e-08 63.2 198 29.3
AUR62036921 Chenopodium quinoa HOM05D000764 ORTHO05D002819 5.2e-08 62.8 220 27.3
Dinv09272 Davidia involucrata HOM05D004634 ORTHO05D005502 6.7e-08 62.4 53 66.0
PRCOL_00007096 Prasinoderma coloniale HOM05D004634 ORTHO05D005502 6.7e-08 62.4 230 29.1
Solyc03g114470.2 Solanum lycopersicum HOM05D000764 ORTHO05D002819 1.2e-07 61.6 192 28.1
EL10Ac5g11218 Beta vulgaris HOM05D000764 ORTHO05D002819 1.5e-07 61.2 192 28.1
Sopen03g033570 Solanum pennellii HOM05D000764 ORTHO05D002819 1.5e-07 61.2 223 27.8
Pp3c9_17650 Physcomitrium patens HOM05D000764 ORTHO05D002819 2.0e-07 60.8 208 27.4
TWI81G0887 Tripterygium wilfordii HOM05D000764 ORTHO05D002819 2.6e-07 60.5 198 28.8
PGSC0003DMG403024509 Solanum tuberosum HOM05D000764 ORTHO05D002819 3.3e-07 60.1 223 27.4
Phvul.003G180200 Phaseolus vulgaris HOM05D000764 ORTHO05D002819 1.7e-06 57.8 182 30.2
CAN.G982.7 Capsicum annuum HOM05D000764 ORTHO05D002819 2.8e-06 57.0 222 27.5
Lj9A434G78 Lonicera japonica HOM05D000764 ORTHO05D002819 2.8e-06 57.0 191 26.7
Sc10g0009640 Simmondsia chinensis HOM05D000764 ORTHO05D002819 2.8e-06 57.0 192 28.6
Nitab4.5_0004342g0070 Nicotiana tabacum HOM05D000764 ORTHO05D002819 4.8e-06 56.2 284 26.1
Sed0013361 Sechium edule HOM05D000764 ORTHO05D002819 4.8e-06 56.2 175 28.6
SGA_v2.0_scaffold144G35872 Striga asiatica HOM05D000764 ORTHO05D002819 4.8e-06 56.2 178 28.7
CDE02G0712 Ceratophyllum demersum HOM05D000764 ORTHO05D002819 6.3e-06 55.8 221 27.6
Potri.012G057700 Populus trichocarpa HOM05D000764 ORTHO05D002819 6.3e-06 55.8 224 25.4
Sabra12G0042300 Salix brachista HOM05D000764 ORTHO05D002819 8.2e-06 55.5 195 27.2


User provided reference genes

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