Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G1043 Cannabis sativa HOM05D003913 ORTHO05D004803 8.7e-112 407.9 392 100.0
Dinv13071 Davidia involucrata HOM05D003913 ORTHO05D004803 1.0e-80 304.7 392 59.7
Atru.chr13.1880 Acer truncatum HOM05D003913 ORTHO05D004803 9.7e-79 298.1 392 84.9
Actinidia29569 Actinidia chinensis HOM05D003913 ORTHO05D004803 2.4e-77 293.5 393 83.2
Dinv44716 Davidia involucrata HOM05D003913 ORTHO05D004803 7.0e-77 292.0 392 60.5
Lj4A109T49 Lonicera japonica HOM05D003913 ORTHO05D004803 1.3e-75 287.7 392 83.4
Lj2C196T3 Lonicera japonica HOM05D003913 ORTHO05D004803 6.1e-73 278.9 396 60.6
PGR031G2719 Punica granatum HOM05D003913 ORTHO05D004803 1.2e-71 274.6 393 77.6
Sabra13G0099000 Salix brachista HOM05D003913 ORTHO05D004803 3.7e-70 269.6 397 81.1
TAR625G1217 Trochodendron aralioides HOM05D003913 ORTHO05D004803 6.3e-70 268.9 391 80.3
Prupe.8G049100 Prunus persica HOM05D003913 ORTHO05D004803 1.2e-68 264.6 397 75.6
Potri.019G087200 Populus trichocarpa HOM05D003913 ORTHO05D004803 1.6e-68 264.2 397 75.3
ClCG08G002560 Citrullus lanatus HOM05D003913 ORTHO05D004803 5.9e-68 262.3 392 75.8
Sed0012824 Sechium edule HOM05D003913 ORTHO05D004803 7.7e-68 261.9 394 67.5
Manes.02G188000 Manihot esculenta HOM05D003913 ORTHO05D004803 1.0e-67 261.5 396 74.7
CsaV3_6G002750 Cucumis sativus L. HOM05D003913 ORTHO05D004803 1.3e-67 261.2 392 75.3
Lalb_Chr20g0121511 Lupinus albus HOM05D003913 ORTHO05D004803 1.3e-67 261.2 391 50.9
MELO3C024997.2 Cucumis melo HOM05D003913 ORTHO05D004803 5.0e-67 259.2 392 75.0
Lj5g0008809 Lotus japonicus HOM05D003913 ORTHO05D004803 1.5e-66 257.7 389 47.0
Ciclev10008663m.g Citrus clementina HOM05D003913 ORTHO05D004803 7.2e-66 255.4 394 74.9
Sed0004416 Sechium edule HOM05D003913 ORTHO05D004803 7.2e-66 255.4 393 75.3
FvH4_5g22350 Fragaria vesca HOM05D003913 ORTHO05D004803 9.5e-66 255.0 393 75.8
FAN18G2025 Fragaria x ananassa HOM05D003913 ORTHO05D004803 9.5e-66 255.0 393 75.8
FAN18G2798 Fragaria x ananassa HOM05D003913 ORTHO05D004803 9.5e-66 255.0 393 75.8
RcHm_v2.0_Chr7g0210071 Rosa chinensis HOM05D003913 ORTHO05D004803 1.2e-65 254.6 393 75.8
PGSC0003DMG400028735 Solanum tuberosum HOM05D003913 ORTHO05D004803 1.6e-65 254.2 394 79.2
Sopen07g004790 Solanum pennellii HOM05D003913 ORTHO05D004803 3.6e-65 253.1 394 79.9
FAN08G0696 Fragaria x ananassa HOM05D003913 ORTHO05D004803 4.7e-65 252.7 394 75.4
Solyc07g008860.3 Solanum lycopersicum HOM05D003913 ORTHO05D004803 1.8e-64 250.8 394 79.4
Oeu053831.1 Olea europaea HOM05D003913 ORTHO05D004803 1.5e-63 247.7 388 67.8
CSS0047372 Camellia sinensis var. sinensis HOM05D003913 ORTHO05D004803 3.7e-62 243.0 395 73.7
MD07G1041000 Malus domestica HOM05D003913 ORTHO05D004803 4.9e-62 242.7 398 72.9
Potri.013G116900 Populus trichocarpa HOM05D003913 ORTHO05D004803 1.1e-61 241.5 394 65.0
Lsat_1_v5_gn_9_43060 Lactuca sativa HOM05D003913 ORTHO05D004803 4.5e-60 236.1 392 71.7
TWI75G1061 Tripterygium wilfordii HOM05D003913 ORTHO05D004803 4.5e-60 236.1 393 74.6
FAN04G3257 Fragaria x ananassa HOM05D003913 ORTHO05D004803 7.8e-60 235.3 428 62.4
Aqoxy1G00206 Aquilegia oxysepala HOM05D003913 ORTHO05D004803 1.7e-59 234.2 388 69.6
arahy.Tifrunner.gnm1.ann1.0Z7T57 Arachis hypogaea HOM05D003913 ORTHO05D004803 6.6e-59 232.3 389 44.0
Glyma.20G173100 Glycine max HOM05D003913 ORTHO05D004803 1.1e-58 231.5 382 54.5
Nitab4.5_0000366g0190 Nicotiana tabacum HOM05D003913 ORTHO05D004803 1.9e-58 230.7 394 72.8
MD02G1272000 Malus domestica HOM05D003913 ORTHO05D004803 3.3e-58 229.9 398 72.4
Phvul.011G104600 Phaseolus vulgaris HOM05D003913 ORTHO05D004803 3.3e-58 229.9 389 59.6
VMungo1080G1176 Vigna mungo HOM05D003913 ORTHO05D004803 5.6e-58 229.2 389 55.8
TWI12G0147 Tripterygium wilfordii HOM05D003913 ORTHO05D004803 7.3e-58 228.8 395 71.4
DCAR_000644 Daucus carota HOM05D003913 ORTHO05D004803 1.2e-57 228.0 384 51.6
Nn3g16733 Nelumbo nucifera HOM05D003913 ORTHO05D004803 1.2e-57 228.0 392 70.4
Nitab4.5_0002890g0020 Nicotiana tabacum HOM05D003913 ORTHO05D004803 1.2e-57 228.0 350 52.3
arahy.Tifrunner.gnm1.ann1.F1WV5B Arachis hypogaea HOM05D003913 ORTHO05D004803 1.6e-57 227.6 389 43.4
Gorai.006G187200 Gossypium raimondii HOM05D003913 ORTHO05D004803 1.6e-57 227.6 394 44.2
GSVIVG01001592001 Vitis vinifera HOM05D003913 ORTHO05D004803 1.6e-57 227.6 394 74.9
CARHR290910 Cardamine hirsuta HOM05D003913 ORTHO05D004803 2.1e-57 227.3 394 61.9
BolC6t38638H Brassica oleracea HOM05D003913 ORTHO05D004803 2.8e-57 226.9 407 51.1
BraA07t30691Z Brassica rapa HOM05D003913 ORTHO05D004803 4.7e-57 226.1 407 59.7
Ah.03g146560 Amaranthus hybridus HOM05D003913 ORTHO05D004803 6.1e-57 225.7 391 75.4
Gohir.D09G165400 Gossypium hirsutum HOM05D003913 ORTHO05D004803 1.8e-56 224.2 394 43.7
Thecc.08G198300 Theobroma cacao HOM05D003913 ORTHO05D004803 2.3e-56 223.8 399 46.6
Rhsim04G0038100 Rhododendron simsii HOM05D003913 ORTHO05D004803 3.0e-56 223.4 415 68.4
PSO541G3150 Papaver somniferum HOM05D003913 ORTHO05D004803 5.2e-56 222.6 361 76.2
A07p30560 Brassica napus HOM05D003913 ORTHO05D004803 8.9e-56 221.9 421 45.4
C06p35320 Brassica napus HOM05D003913 ORTHO05D004803 1.2e-55 221.5 421 58.9
RcHm_v2.0_Chr6g0272901 Rosa chinensis HOM05D003913 ORTHO05D004803 1.2e-55 221.5 397 71.0
AL2G31420 Arabidopsis lyrata HOM05D003913 ORTHO05D004803 1.5e-55 221.1 394 61.2
ECA236G4407 Erigeron canadensis HOM05D003913 ORTHO05D004803 1.7e-54 217.6 379 45.1
LjContig00222g0022410 Lotus japonicus HOM05D003913 ORTHO05D004803 2.2e-54 217.2 388 42.5
BcaB03g15621 Brassica carinata HOM05D003913 ORTHO05D004803 1.4e-53 214.5 397 60.7
SalBow7G2889 Salvia bowleyana HOM05D003913 ORTHO05D004803 1.4e-53 214.5 393 58.5
FvH4_2g12470 Fragaria vesca HOM05D003913 ORTHO05D004803 2.4e-53 213.8 397 70.5
Sabra19G0097800 Salix brachista HOM05D003913 ORTHO05D004803 7.0e-53 212.2 403 75.2
Sabra19G0101300 Salix brachista HOM05D003913 ORTHO05D004803 7.0e-53 212.2 403 74.2
A07p37990 Brassica napus HOM05D003913 ORTHO05D004803 9.2e-53 211.8 395 60.3
ECA232G2276 Erigeron canadensis HOM05D003913 ORTHO05D004803 1.2e-52 211.5 392 67.9
CANSAT11G1897 Cannabis sativa HOM05D003913 ORTHO05D004803 3.5e-52 209.9 106 98.1
FAN24G0738 Fragaria x ananassa HOM05D003913 ORTHO05D004803 3.5e-52 209.9 397 70.3
BcaC08g46615 Brassica carinata HOM05D003913 ORTHO05D004803 2.3e-51 207.2 390 60.0
CiPaw.15G007000 Carya illinoinensis HOM05D003913 ORTHO05D004803 2.3e-51 207.2 388 62.4
Aa31LG4G8790 Aethionema arabicum HOM05D003913 ORTHO05D004803 1.6e-49 201.1 409 57.9
MSTRG.9615 Avicennia marina HOM05D003913 ORTHO05D004803 3.6e-49 199.9 391 62.7
C06p45910 Brassica napus HOM05D003913 ORTHO05D004803 6.2e-49 199.1 395 59.5
AUR62017935 Chenopodium quinoa HOM05D003913 ORTHO05D004803 1.1e-48 198.4 404 58.4
GSVIVG01015205001 Vitis vinifera HOM05D003913 ORTHO05D004803 1.4e-48 198.0 396 50.0
Sp5g26870 Schrenkiella parvula HOM05D003913 ORTHO05D004803 3.1e-48 196.8 395 59.0
SpUn0020_0100 Schrenkiella parvula HOM05D003913 ORTHO05D004803 3.1e-48 196.8 395 59.0
Cc11_g02860 Coffea canephora HOM05D003913 ORTHO05D004803 4.0e-48 196.4 389 61.2
PSO675G8150 Papaver somniferum HOM05D003913 ORTHO05D004803 4.0e-48 196.4 387 70.0
HanXRQChr11g0320411 Helianthus annuus HOM05D003913 ORTHO05D004803 6.8e-48 195.7 393 67.7
Thhalv10018505m.g Eutrema salsugineum HOM05D003913 ORTHO05D004803 1.5e-47 194.5 385 59.7
CDE08G0059 Ceratophyllum demersum HOM05D003913 ORTHO05D004803 2.0e-47 194.1 384 59.1
Oeu053830.1 Olea europaea HOM05D003913 ORTHO05D004803 2.0e-47 194.1 388 61.3
SGA_v2.0_scaffold114G31919 Striga asiatica HOM05D003913 ORTHO05D004803 2.0e-47 194.1 343 67.3
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 3.4e-47 193.4 274 50.7
Gorai.010G129100 Gossypium raimondii HOM05D003913 ORTHO05D004803 4.4e-47 193.0 394 39.3
BcaC08g45753 Brassica carinata HOM05D003913 ORTHO05D004803 5.8e-47 192.6 397 57.9
BolC6t39643H Brassica oleracea HOM05D003913 ORTHO05D004803 7.5e-47 192.2 389 59.9
AT1G71840 Arabidopsis thaliana HOM05D003913 ORTHO05D004803 9.8e-47 191.8 394 57.6
Gohir.D06G113300 Gossypium hirsutum HOM05D003913 ORTHO05D004803 1.7e-46 191.0 394 39.1
Ca_30575_v3 Cicer arietinum L. HOM05D003913 ORTHO05D004803 2.9e-46 190.3 394 34.5
vmacro21210 Vaccinium macrocarpon HOM05D003913 ORTHO05D004803 8.3e-46 188.7 414 63.0
BraA07t31364Z Brassica rapa HOM05D003913 ORTHO05D004803 3.2e-45 186.8 385 58.7
Gohir.A06G109200 Gossypium hirsutum HOM05D003913 ORTHO05D004803 7.0e-45 185.7 365 41.4
Carub.0002s1860 Capsella rubella HOM05D003913 ORTHO05D004803 1.6e-44 184.5 394 62.4
Hund19608 Selenicereus undatus HOM05D003913 ORTHO05D004803 2.0e-44 184.1 435 56.6
Sc16g0003970 Simmondsia chinensis HOM05D003913 ORTHO05D004803 7.8e-44 182.2 338 71.9
EL10Ac6g15251 Beta vulgaris HOM05D003913 ORTHO05D004803 1.0e-43 181.8 396 65.9
MBI10_g42737_MAGBIO Magnolia biondii HOM05D003913 ORTHO05D004803 1.3e-43 181.4 347 72.0
Psat6g188560 Pisum sativum HOM05D000168 ORTHO05D004803 2.3e-43 180.6 370 33.8
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 3.0e-43 180.3 406 33.5
Gohir.A09G169700 Gossypium hirsutum HOM05D003913 ORTHO05D004803 3.9e-43 179.9 393 38.2
THA.LOC104826775 Tarenaya hassleriana HOM05D003913 ORTHO05D004803 3.9e-43 179.9 389 57.8
Rhsim06G0087400 Rhododendron simsii HOM05D003913 ORTHO05D004803 1.5e-42 177.9 488 56.4
Aa31LG7G6630 Aethionema arabicum HOM05D003913 ORTHO05D004803 3.3e-42 176.8 395 32.7
Duzib211G0424 Durio zibethinus HOM05D003913 ORTHO05D004803 1.6e-41 174.5 399 40.4
AUR62003626 Chenopodium quinoa HOM05D003913 ORTHO05D004803 3.6e-41 173.3 393 64.1
arahy.Tifrunner.gnm1.ann1.A7TGXU Arachis hypogaea HOM05D003913 ORTHO05D004803 8.1e-41 172.2 409 35.9
Zm00001eb362180 Zea mays HOM05D003913 ORTHO05D004803 1.4e-40 171.4 392 49.2
Hma1.2p1_0276F.1_g111300 Hydrangea macrophylla HOM05D003913 ORTHO05D004803 2.3e-40 170.6 109 75.2
DCAR_004603 Daucus carota HOM05D000366 ORTHO05D000437 1.5e-39 167.9 108 75.0
Cpa.g.sc2399.1 Carica papaya HOM05D003913 ORTHO05D004803 3.4e-39 166.8 113 72.6
TAR381G0993 Trochodendron aralioides HOM05D003913 ORTHO05D004803 9.9e-39 165.2 111 73.0
Cfa018220 Carpinus fangiana HOM05D003913 ORTHO05D004803 1.3e-38 164.9 341 68.6
COL.COLO4_13734 Corchorus olitorius HOM05D003913 ORTHO05D004803 2.2e-38 164.1 337 43.9
VMungo0720G0336 Vigna mungo HOM05D003913 ORTHO05D004803 2.2e-38 164.1 395 50.9
Peaxi162Scf01838g00003 Petunia axillaris HOM05D000173 ORTHO05D000316 3.7e-38 163.3 277 39.4
ATR0001G003 Amborella trichopoda HOM05D003913 ORTHO05D004803 4.9e-38 162.9 343 40.2
EL10Ac5g10958 Beta vulgaris HOM05D003913 ORTHO05D004803 2.4e-37 160.6 393 31.3
Psat6g019720 Pisum sativum HOM05D003913 ORTHO05D004803 2.4e-37 160.6 264 37.5
QL02p034830 Quercus lobata HOM05D003913 ORTHO05D004803 3.2e-37 160.2 103 75.7
Os03g0685600 Oryza sativa ssp. japonica HOM05D003913 ORTHO05D004803 4.1e-37 159.8 390 55.4
Nitab4.5_0002890g0010 Nicotiana tabacum HOM05D003913 ORTHO05D004803 5.4e-37 159.5 328 41.2
MBI10_g41322_MAGBIO Magnolia biondii HOM05D003913 ORTHO05D004803 4.6e-36 156.4 114 67.5
Eucgr.E02330 Eucalyptus grandis HOM05D003913 ORTHO05D004803 6.0e-36 156.0 266 75.6
Zm00001eb139680 Zea mays HOM05D003913 ORTHO05D004803 6.0e-36 156.0 391 58.3
COL.COLO4_03395 Corchorus olitorius HOM05D003913 ORTHO05D004803 7.3e-34 149.1 114 64.0
HPP92_008098 Vanilla planifolia HOM05D003913 ORTHO05D004803 7.3e-34 149.1 391 58.6
Migut.I00088 Erythranthe guttata HOM05D003913 ORTHO05D004803 9.5e-34 148.7 412 42.2
Migut.J01123 Erythranthe guttata HOM05D003913 ORTHO05D004803 2.1e-33 147.5 402 30.8
Pp3c14_20020 Physcomitrium patens HOM05D003913 ORTHO05D004803 8.1e-33 145.6 401 60.1
CARHR124080 Cardamine hirsuta HOM05D003913 ORTHO05D004803 1.2e-31 141.7 373 29.5
Glyma.10G218600 Glycine max HOM05D003913 ORTHO05D004803 1.5e-31 141.4 115 61.7
Haze_17883 Corylus avellana HOM05D003913 ORTHO05D004803 9.9e-31 138.7 483 51.8
FAN20G2057 Fragaria x ananassa HOM05D003913 ORTHO05D004803 1.3e-30 138.3 120 59.2
TPR.G30584 Trifolium pratense HOM05D003913 ORTHO05D004803 4.1e-29 133.3 396 28.8
SEGI_39165 Sequoiadendron giganteum HOM05D003913 ORTHO05D004803 3.5e-28 130.2 391 53.7
unitig_747.g21315 Utricularia gibba HOM05D003913 ORTHO05D004803 7.8e-28 129.0 392 28.6
AUR62024845 Chenopodium quinoa HOM05D003913 ORTHO05D004803 1.7e-27 127.9 384 27.3
Hma1.2p1_0276F.1_g111310 Hydrangea macrophylla HOM05D003913 ORTHO05D004803 2.3e-27 127.5 116 56.9
Mapoly0155s0005 Marchantia polymorpha HOM05D003913 ORTHO05D004803 7.3e-26 122.5 397 33.0
Glyma.09G057500 Glycine max HOM05D003913 ORTHO05D004803 8.1e-25 119.0 167 41.3
Migut.D01748 Erythranthe guttata HOM05D003913 ORTHO05D004803 1.8e-24 117.9 393 53.9
AagrBONN_evm.TU.Sc2ySwM_368.376 Anthoceros agrestis HOM05D003913 ORTHO05D004803 2.4e-24 117.5 118 54.2
PSO455G0073 Papaver somniferum HOM05D003913 ORTHO05D004803 8.4e-22 109.0 60 83.3
Lj4C56G20 Lonicera japonica HOM05D003913 ORTHO05D004803 1.9e-21 107.8 213 34.7
Thecc.09G236800 Theobroma cacao HOM05D003913 ORTHO05D004803 2.4e-21 107.5 380 26.6
SMO347G0114 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 7.1e-21 105.9 112 48.2
EL10Ac9g21859 Beta vulgaris HOM05D003913 ORTHO05D004803 1.7e-19 101.3 332 25.6
AUR62001664 Chenopodium quinoa HOM05D003913 ORTHO05D004803 1.3e-17 95.1 343 23.9
SMO367G0065 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 3.6e-17 93.6 351 24.8
SHI13909 Sapria himalayana HOM05D003913 ORTHO05D004803 3.4e-15 87.0 95 50.5
Cre12.g487200 Chlamydomonas reinhardtii HOM05D003913 ORTHO05D004803 1.7e-14 84.7 348 26.7
Medtr7g079470 Medicago truncatula HOM05D003913 ORTHO05D004803 6.4e-14 82.8 70 61.4
BraA02t06789Z Brassica rapa HOM05D003913 ORTHO05D004803 1.9e-13 81.3 50 74.0
A02p17440 Brassica napus HOM05D003913 ORTHO05D004803 7.1e-13 79.3 50 72.0
Glyma.17G173200 Glycine max HOM05D003913 ORTHO05D004803 9.3e-13 79.0 41 82.9
Glyma.10G218500 Glycine max HOM05D003913 ORTHO05D004803 4.6e-12 76.6 98 43.9
BolC6t38649H Brassica oleracea HOM05D003913 ORTHO05D004803 1.9e-10 71.2 150 32.0
SMO343G0013 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 9.6e-10 68.9 381 22.6
Medtr7g111550 Medicago truncatula HOM05D003913 ORTHO05D004803 3.7e-09 67.0 92 41.3
Psat6g021120 Pisum sativum HOM05D003913 ORTHO05D004803 1.2e-07 62.0 89 40.4
CBR_g49506 Chara braunii HOM05D003913 ORTHO05D004803 7.6e-07 59.3 100 36.0
BolC6t38648H Brassica oleracea HOM05D003420 ORTHO05D003970 4.9e-06 56.6 46 58.7


User provided reference genes

Program Settings