Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G1027 Cannabis sativa HOM05D004564 ORTHO05D006106 0.0e+00 1760.7 919 100.0
Prupe.3G177800 Prunus persica HOM05D004564 ORTHO05D006106 0.0e+00 1460.7 923 82.3
MD09G1148300 Malus domestica HOM05D004564 ORTHO05D006106 0.0e+00 1445.3 923 81.5
RcHm_v2.0_Chr2g0152251 Rosa chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1398.3 923 77.2
QL08p045017 Quercus lobata HOM05D004564 ORTHO05D006106 0.0e+00 1390.9 997 72.8
CiPaw.04G137200 Carya illinoinensis HOM05D004564 ORTHO05D006106 0.0e+00 1383.6 921 76.4
Thecc.01G168400 Theobroma cacao HOM05D004564 ORTHO05D006106 0.0e+00 1373.2 921 77.9
TWI59G1136 Tripterygium wilfordii HOM05D004564 ORTHO05D006106 0.0e+00 1367.8 924 74.7
Gorai.007G175000 Gossypium raimondii HOM05D004564 ORTHO05D006106 0.0e+00 1359.4 918 76.7
FvH4_6g38720 Fragaria vesca HOM05D004564 ORTHO05D006106 0.0e+00 1359.0 923 75.2
FAN09G3866 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1351.3 937 74.0
GSVIVG01020836001 Vitis vinifera HOM05D004564 ORTHO05D006106 0.0e+00 1350.1 924 74.4
CsaV3_4G007910 Cucumis sativus L. HOM05D004564 ORTHO05D006106 0.0e+00 1342.4 921 73.2
CSS0004840 Camellia sinensis var. sinensis HOM05D004564 ORTHO05D006106 0.0e+00 1340.9 909 75.0
FAN14G4455 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1337.8 937 73.7
TAR369G0268 Trochodendron aralioides HOM05D004564 ORTHO05D006106 0.0e+00 1336.6 916 76.0
Gohir.A11G157200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 0.0e+00 1336.2 918 75.7
Gohir.D11G164200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 0.0e+00 1333.9 918 75.5
arahy.Tifrunner.gnm1.ann1.THQ3DC Arachis hypogaea HOM05D004564 ORTHO05D006106 0.0e+00 1331.6 921 75.0
arahy.Tifrunner.gnm1.ann1.PNUX2Z Arachis hypogaea HOM05D004564 ORTHO05D006106 0.0e+00 1327.0 931 74.5
Ca_06263_v3 Cicer arietinum L. HOM05D004564 ORTHO05D006106 0.0e+00 1318.5 961 71.8
Actinidia32511 Actinidia chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1310.4 924 73.2
Glyma.14G030500 Glycine max HOM05D004564 ORTHO05D006106 0.0e+00 1310.0 924 74.5
Potri.004G081200 Populus trichocarpa HOM05D004564 ORTHO05D006106 0.0e+00 1308.5 917 73.0
VMungo0647G1349 Vigna mungo HOM05D004564 ORTHO05D006106 0.0e+00 1304.3 920 73.9
Phvul.008G194400 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 0.0e+00 1296.6 922 73.6
Duzib133G1099 Durio zibethinus HOM05D004564 ORTHO05D006106 0.0e+00 1295.4 916 74.5
Manes.01G123700 Manihot esculenta HOM05D004564 ORTHO05D006106 0.0e+00 1293.9 915 72.8
FAN05G0785 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1286.2 1087 63.8
LjContig00049g0003012 Lotus japonicus HOM05D004564 ORTHO05D006106 0.0e+00 1285.0 932 71.6
TPR.G10155 Trifolium pratense HOM05D004564 ORTHO05D006106 0.0e+00 1283.1 922 71.0
Dinv03683 Davidia involucrata HOM05D004564 ORTHO05D006106 0.0e+00 1278.1 847 76.6
Haze_13558 Corylus avellana HOM05D004564 ORTHO05D006106 0.0e+00 1277.7 1080 64.8
Medtr5g091020 Medicago truncatula HOM05D004564 ORTHO05D006106 0.0e+00 1276.2 922 72.7
Sabra04G0053900 Salix brachista HOM05D004564 ORTHO05D006106 0.0e+00 1272.7 935 70.7
DCAR_016941 Daucus carota HOM05D004564 ORTHO05D006106 0.0e+00 1268.8 922 69.1
COL.COLO4_38399 Corchorus olitorius HOM05D004564 ORTHO05D006106 0.0e+00 1266.9 940 71.3
Lj1g0025808 Lotus japonicus HOM05D004564 ORTHO05D006106 0.0e+00 1252.7 932 70.0
Cc05_g01430 Coffea canephora HOM05D004564 ORTHO05D006106 0.0e+00 1241.5 923 67.6
MSTRG.6616 Avicennia marina HOM05D004564 ORTHO05D006106 0.0e+00 1232.2 921 67.1
ClCG07G010420 Citrullus lanatus HOM05D004564 ORTHO05D006106 0.0e+00 1229.5 873 71.7
Nn7g37923 Nelumbo nucifera HOM05D004564 ORTHO05D006106 0.0e+00 1223.0 869 71.1
Cpa.g.sc119.28 Carica papaya HOM05D004564 ORTHO05D006106 0.0e+00 1218.0 929 68.7
PSO782G0424 Papaver somniferum HOM05D004564 ORTHO05D006106 0.0e+00 1213.0 908 68.4
PSO170G0418 Papaver somniferum HOM05D004564 ORTHO05D006106 0.0e+00 1212.6 907 68.8
Sopen08g021130 Solanum pennellii HOM05D004564 ORTHO05D006106 0.0e+00 1208.7 911 67.4
PGR042G1847 Punica granatum HOM05D004564 ORTHO05D006106 0.0e+00 1205.7 914 69.1
Migut.M00072 Erythranthe guttata HOM05D004564 ORTHO05D006106 0.0e+00 1204.5 918 68.1
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 0.0e+00 1202.2 923 65.1
THA.LOC104800817 Tarenaya hassleriana HOM05D004564 ORTHO05D006106 0.0e+00 1192.6 910 68.7
Aa31LG1G7670 Aethionema arabicum HOM05D004564 ORTHO05D006106 0.0e+00 1187.2 913 67.6
Solyc08g067190.4 Solanum lycopersicum HOM05D004564 ORTHO05D006106 0.0e+00 1180.2 963 63.9
BcaB02g06779 Brassica carinata HOM05D004564 ORTHO05D006106 0.0e+00 1175.6 914 66.8
BraA10t42789Z Brassica rapa HOM05D004564 ORTHO05D006106 0.0e+00 1175.6 917 66.7
A10p05220 Brassica napus HOM05D004564 ORTHO05D006106 0.0e+00 1174.5 914 66.6
C05p04820 Brassica napus HOM05D004564 ORTHO05D006106 0.0e+00 1174.5 920 66.6
Lsat_1_v5_gn_9_29980 Lactuca sativa HOM05D004564 ORTHO05D006106 0.0e+00 1171.8 926 66.1
BolC5t29255H Brassica oleracea HOM05D004564 ORTHO05D006106 0.0e+00 1167.5 920 66.4
Sp1g05350 Schrenkiella parvula HOM05D004564 ORTHO05D006106 0.0e+00 1162.5 914 67.3
AT1G06590 Arabidopsis thaliana HOM05D004564 ORTHO05D006106 0.0e+00 1161.0 916 66.8
AL1G16620 Arabidopsis lyrata HOM05D004564 ORTHO05D006106 0.0e+00 1160.6 920 67.1
CAN.G348.3 Capsicum annuum HOM05D004564 ORTHO05D006106 0.0e+00 1158.3 870 67.8
Carub.0001s0595 Capsella rubella HOM05D004564 ORTHO05D006106 0.0e+00 1157.1 916 66.4
ECA247G1853 Erigeron canadensis HOM05D004564 ORTHO05D006106 0.0e+00 1145.2 910 65.3
SGA_v2.0_scaffold181G39711 Striga asiatica HOM05D004564 ORTHO05D006106 0.0e+00 1142.1 988 62.4
HanXRQChr10g0292821 Helianthus annuus HOM05D004564 ORTHO05D006106 0.0e+00 1141.7 911 65.6
Aqoxy1G01488 Aquilegia oxysepala HOM05D004564 ORTHO05D006106 0.0e+00 1124.4 915 66.7
Cfa023356 Carpinus fangiana HOM05D004564 ORTHO05D006106 0.0e+00 1119.0 931 65.5
Thhalv10006743m.g Eutrema salsugineum HOM05D004564 ORTHO05D006106 0.0e+00 1117.1 915 65.4
Ciclev10030760m.g Citrus clementina HOM05D004564 ORTHO05D006106 0.0e+00 1112.8 772 74.2
Sed0025117 Sechium edule HOM05D004564 ORTHO05D006106 0.0e+00 1111.3 760 73.6
Rhsim12G0010800 Rhododendron simsii HOM05D004564 ORTHO05D006106 0.0e+00 1106.7 913 64.6
A09p66910 Brassica napus HOM05D004564 ORTHO05D006106 0.0e+00 1104.4 915 63.8
EL10Ac1g01740 Beta vulgaris HOM05D004564 ORTHO05D006106 0.0e+00 1098.6 913 61.1
BraA09t42026Z Brassica rapa HOM05D004564 ORTHO05D006106 0.0e+00 1087.8 943 62.0
Sc06g0007580 Simmondsia chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1085.5 922 61.5
Nitab4.5_0004346g0010 Nicotiana tabacum HOM05D004564 ORTHO05D006106 6.3e-312 1074.3 871 64.3
C08p51140 Brassica napus HOM05D004564 ORTHO05D006106 9.9e-308 1060.1 915 62.0
BolC8t52640H Brassica oleracea HOM05D004564 ORTHO05D006106 7.9e-305 1050.4 932 60.6
Oeu022916.1 Olea europaea HOM05D004564 ORTHO05D006106 2.1e-302 1042.3 1157 50.4
AUR62034940 Chenopodium quinoa HOM05D004564 ORTHO05D006106 3.8e-299 1031.6 864 60.9
AUR62022316 Chenopodium quinoa HOM05D004564 ORTHO05D006106 5.5e-298 1027.7 924 57.9
Nitab4.5_0000508g0020 Nicotiana tabacum HOM05D004564 ORTHO05D006106 1.6e-297 1026.2 920 60.8
Hund26665 Selenicereus undatus HOM05D004564 ORTHO05D006106 2.1e-294 1015.8 1019 55.1
Ah.05g168440 Amaranthus hybridus HOM05D004564 ORTHO05D006106 1.6e-289 999.6 911 59.5
Lj1A591G26 Lonicera japonica HOM05D004564 ORTHO05D006106 4.6e-289 998.0 720 72.1
unitig_37.g12587 Utricularia gibba HOM05D004564 ORTHO05D006106 2.0e-276 956.1 945 53.8
Eucgr.A02026 Eucalyptus grandis HOM05D004564 ORTHO05D006106 1.9e-274 949.5 731 69.8
Os12g0626300 Oryza sativa ssp. japonica HOM05D004564 ORTHO05D006106 2.5e-274 949.1 922 55.4
MELO3C016147.2 Cucumis melo HOM05D004564 ORTHO05D006106 7.9e-273 944.1 642 73.4
Atru.chr6.2044 Acer truncatum HOM05D004564 ORTHO05D006106 1.4e-272 943.3 641 78.6
Peaxi162Scf00922g00319 Petunia axillaris HOM05D004564 ORTHO05D006106 5.3e-269 931.4 772 62.7
SalBow1G3587 Salvia bowleyana HOM05D004564 ORTHO05D006106 3.4e-268 928.7 726 64.3
QL93p2016_0008 Quercus lobata HOM05D004564 ORTHO05D006106 5.5e-266 921.4 599 77.1
Zm00001eb128180 Zea mays HOM05D004564 ORTHO05D006106 1.4e-261 906.7 916 53.5
Lalb_Chr10g0106571 Lupinus albus HOM05D004564 ORTHO05D006106 1.4e-224 783.9 571 69.4
CARHR006200 Cardamine hirsuta HOM05D004564 ORTHO05D006106 2.7e-212 743.0 568 69.4
vmacro08736 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 2.6e-207 726.5 514 73.9
Psat2g017160 Pisum sativum HOM05D004564 ORTHO05D006106 3.2e-197 693.0 487 72.7
ATR0763G133 Amborella trichopoda HOM05D004564 ORTHO05D006106 2.5e-173 613.6 548 63.3
MBI18_g13604_MAGBIO Magnolia biondii HOM05D004564 ORTHO05D006106 9.3e-173 611.7 911 45.1
Psat2g017120 Pisum sativum HOM05D004564 ORTHO05D006106 1.6e-169 600.9 430 70.5
BcaNung07074 Brassica carinata HOM05D004564 ORTHO05D006106 2.2e-166 590.5 439 71.8
Pp3c3_33140 Physcomitrium patens HOM05D004564 ORTHO05D006106 2.2e-166 590.5 919 40.6
FAN02G2671 Fragaria x ananassa HOM05D004564 ORTHO05D006106 4.6e-164 582.8 473 67.2
Hma1.2p1_0539F.1_g174590 Hydrangea macrophylla HOM05D004564 ORTHO05D006106 3.7e-153 546.6 412 67.2
AagrBONN_evm.TU.Sc2ySwM_228.5505 Anthoceros agrestis HOM05D004564 ORTHO05D006106 3.8e-142 510.0 906 37.0
SMO174G0184 Selaginella moellendorffii HOM05D004564 ORTHO05D006106 3.3e-138 496.9 895 36.2
SHI30099 Sapria himalayana HOM05D004564 ORTHO05D006106 5.3e-136 489.6 605 47.8
vmacro08737 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 4.2e-133 479.9 633 45.2
Mapoly0007s0190 Marchantia polymorpha HOM05D004564 ORTHO05D006106 4.7e-124 449.9 917 34.6
Lalb_Chr10g0106581 Lupinus albus HOM05D004564 ORTHO05D006106 5.7e-122 443.0 297 78.1
arahy.Tifrunner.gnm1.ann1.UKG9X7 Arachis hypogaea HOM05D004564 ORTHO05D006106 2.7e-119 434.1 349 63.6
HPP92_001899 Vanilla planifolia HOM05D004564 ORTHO05D006106 2.9e-105 387.5 685 39.3
CBR_g44342 Chara braunii HOM05D000019 ORTHO05D000353 4.0e-99 367.1 570 40.5
GSVIVG01013077001 Vitis vinifera HOM05D004564 ORTHO05D006106 1.3e-94 352.1 244 76.2
CAN.G3149.1 Capsicum annuum HOM05D004564 ORTHO05D006106 5.6e-85 320.1 228 71.1
SEGI_14916 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 9.9e-82 309.3 280 58.2
Glyma.02G284500 Glycine max HOM05D004564 ORTHO05D006106 6.2e-76 290.0 221 76.0
MD17G1134700 Malus domestica HOM05D004564 ORTHO05D006106 2.4e-75 288.1 283 59.4
HPP92_001867 Vanilla planifolia HOM05D004564 ORTHO05D006106 2.2e-73 281.6 603 35.7
MD17G1134600 Malus domestica HOM05D004564 ORTHO05D006106 2.7e-71 274.6 261 57.1
TAR626G0359 Trochodendron aralioides HOM05D004564 ORTHO05D006106 2.1e-68 265.0 151 84.1
CDE02G3007 Ceratophyllum demersum HOM05D004564 ORTHO05D006106 4.3e-45 187.6 152 60.5
Peaxi162Scf00922g00318 Petunia axillaris HOM05D004564 ORTHO05D006106 1.5e-42 179.1 124 71.8
arahy.Tifrunner.gnm1.ann1.RHC2N4 Arachis hypogaea HOM05D000056 ORTHO05D006106 1.3e-41 176.0 157 56.7
TAR626G0994 Trochodendron aralioides HOM05D004564 ORTHO05D006106 2.2e-36 158.7 102 73.5
Phvul.001G172501 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 4.8e-36 157.5 132 61.4
SHI30097 Sapria himalayana HOM05D004564 ORTHO05D006106 1.5e-34 152.5 243 39.5
Lj5g0002046 Lotus japonicus HOM05D004564 ORTHO05D000491 2.0e-34 152.1 195 47.7
BcaNung07000 Brassica carinata HOM05D004564 ORTHO05D006106 5.9e-34 150.6 118 61.0
ATR0763G243 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.4e-32 146.0 195 42.6
Rhsim02G0232100 Rhododendron simsii HOM05D000252 ORTHO05D000307 2.4e-27 128.6 150 54.0
ATR0820G167 Amborella trichopoda HOM05D004564 ORTHO05D006106 2.9e-25 121.7 120 55.0
Lj5g0014248 Lotus japonicus HOM05D004564 ORTHO05D006106 3.2e-24 118.2 169 45.6
ATR0763G128 Amborella trichopoda HOM05D004564 ORTHO05D006106 2.7e-23 115.2 75 66.7
TPR.G10922 Trifolium pratense HOM05D004564 ORTHO05D006106 1.0e-22 113.2 84 75.0
Rhsim12G0011200 Rhododendron simsii HOM05D004564 ORTHO05D000827 3.4e-21 108.2 100 63.0
ATR0598G245 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.8e-19 102.4 105 57.1
Lalb_Chr10g0106561 Lupinus albus HOM05D004564 ORTHO05D006106 3.2e-16 91.7 58 72.4
TPR.G7402 Trifolium pratense HOM05D023930 ORTHO05D006106 4.8e-12 77.8 139 39.6
Rhsim12G0011100 Rhododendron simsii HOM05D004564 ORTHO05D006106 6.3e-12 77.4 69 55.1
Rhsim12G0011600 Rhododendron simsii HOM05D004564 ORTHO05D000827 8.3e-12 77.0 66 66.7
SHI30098 Sapria himalayana HOM05D004564 ORTHO05D006106 1.1e-11 76.6 246 28.5
TPR.G35705 Trifolium pratense HOM05D023930 ORTHO05D018030 5.4e-11 74.3 141 36.2
Rhsim12G0011500 Rhododendron simsii HOM05D004564 ORTHO05D006106 2.7e-10 72.0 67 50.7
Cre01.g034650 Chlamydomonas reinhardtii HOM05D004564 ORTHO05D006106 7.7e-10 70.5 862 20.8
Zm00001eb370760 Zea mays HOM05D004564 ORTHO05D006106 7.7e-10 70.5 65 53.8
SEGI_30840 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 1.5e-08 66.2 113 40.7
TPR.G8869 Trifolium pratense HOM05D020190 ORTHO05D018030 6.1e-07 60.8 98 34.7
SEGI_33722 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 8.9e-06 57.0 83 48.2


User provided reference genes

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