Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G0954 Cannabis sativa HOM05D004555 ORTHO05D005305 4.5e-124 448.0 230 100.0
Prupe.1G374200 Prunus persica HOM05D004555 ORTHO05D005305 9.7e-95 350.5 223 75.8
Actinidia29808 Actinidia chinensis HOM05D004555 ORTHO05D005305 1.8e-93 346.3 221 75.1
FAN15G3036 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.2e-92 343.6 227 72.2
FAN26G3263 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.2e-92 343.6 227 72.2
FAN27G1022 Fragaria x ananassa HOM05D004555 ORTHO05D005305 2.0e-92 342.8 227 72.2
MD08G1024400 Malus domestica HOM05D004555 ORTHO05D005305 2.6e-92 342.4 218 75.2
Dinv39456 Davidia involucrata HOM05D004555 ORTHO05D005305 4.5e-92 341.7 222 73.4
FvH4_2g39310 Fragaria vesca HOM05D004555 ORTHO05D005305 5.9e-92 341.3 227 71.8
RcHm_v2.0_Chr6g0301691 Rosa chinensis HOM05D004555 ORTHO05D005305 1.1e-90 337.0 229 71.6
CiPaw.07G156800 Carya illinoinensis HOM05D004555 ORTHO05D005305 3.2e-90 335.5 222 70.7
QL02p009623 Quercus lobata HOM05D004555 ORTHO05D005305 4.2e-90 335.1 218 73.4
Rhsim07G0242300 Rhododendron simsii HOM05D004555 ORTHO05D005305 7.2e-90 334.3 222 73.0
Rhsim07G0242900 Rhododendron simsii HOM05D004555 ORTHO05D005305 7.2e-90 334.3 222 73.0
HanXRQChr09g0269571 Helianthus annuus HOM05D004555 ORTHO05D005305 1.6e-89 333.2 216 72.7
Migut.C00768 Erythranthe guttata HOM05D004555 ORTHO05D005305 2.1e-89 332.8 224 69.6
THA.LOC104812564 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 3.6e-89 332.0 227 70.0
MSTRG.1250 Avicennia marina HOM05D004555 ORTHO05D005305 8.0e-89 330.9 229 69.0
CAN.G847.6 Capsicum annuum HOM05D004555 ORTHO05D005305 3.0e-88 328.9 229 68.6
Solyc12g089230.2 Solanum lycopersicum HOM05D000012 ORTHO05D000567 3.0e-88 328.9 221 71.9
CsaV3_2G029030 Cucumis sativus L. HOM05D004555 ORTHO05D005305 3.9e-88 328.6 217 71.4
QL02p009638 Quercus lobata HOM05D004555 ORTHO05D005305 5.2e-88 328.2 224 71.0
ClCG08G014730 Citrullus lanatus HOM05D004555 ORTHO05D005305 6.7e-88 327.8 216 70.4
Sopen12g031110 Solanum pennellii HOM05D004555 ORTHO05D005305 6.7e-88 327.8 221 71.9
QL02p009656 Quercus lobata HOM05D004555 ORTHO05D005305 8.8e-88 327.4 224 71.0
HanXRQChr16g0501461 Helianthus annuus HOM05D004555 ORTHO05D005305 1.5e-87 326.6 219 71.2
Lsat_1_v5_gn_4_117401 Lactuca sativa HOM05D004555 ORTHO05D005305 1.5e-87 326.6 219 69.9
CSS0029656 Camellia sinensis var. sinensis HOM05D004555 ORTHO05D005305 2.0e-87 326.2 226 70.4
PGSC0003DMG400015428 Solanum tuberosum HOM05D004555 ORTHO05D005305 2.0e-87 326.2 222 71.2
Ciclev10002388m.g Citrus clementina HOM05D004555 ORTHO05D005305 5.7e-87 324.7 218 69.3
SGA_v2.0_scaffold201G41359 Striga asiatica HOM05D004555 ORTHO05D005305 5.7e-87 324.7 227 66.5
GSVIVG01009773001 Vitis vinifera HOM05D004555 ORTHO05D005305 1.7e-86 323.2 223 70.0
Atru.chr13.408 Acer truncatum HOM05D004555 ORTHO05D005305 2.8e-86 322.4 218 71.6
Cfa013876 Carpinus fangiana HOM05D004555 ORTHO05D005305 4.8e-86 321.6 219 71.2
PGSC0003DMG400003702 Solanum tuberosum HOM05D004555 ORTHO05D005305 4.8e-86 321.6 216 70.4
Solyc04g080750.4 Solanum lycopersicum HOM05D004555 ORTHO05D005305 6.3e-86 321.2 216 70.8
Sc02g0005680 Simmondsia chinensis HOM05D004555 ORTHO05D005305 8.2e-86 320.9 222 70.7
Potri.005G231600 Populus trichocarpa HOM05D004555 ORTHO05D005305 1.1e-85 320.5 228 68.4
CANSAT25G2211 Cannabis sativa HOM05D004555 ORTHO05D005305 2.4e-85 319.3 225 67.6
Aqoxy5G01553 Aquilegia oxysepala HOM05D004555 ORTHO05D005305 4.1e-85 318.5 222 70.3
Actinidia29807 Actinidia chinensis HOM05D004555 ORTHO05D005305 5.3e-85 318.2 222 68.0
Duzib093G2146 Durio zibethinus HOM05D004555 ORTHO05D005305 5.3e-85 318.2 214 68.2
Lalb_Chr22g0354561 Lupinus albus HOM05D004555 ORTHO05D005305 5.3e-85 318.2 218 67.4
Peaxi162Scf00189g00812 Petunia axillaris HOM05D004555 ORTHO05D005305 5.3e-85 318.2 217 67.3
arahy.Tifrunner.gnm1.ann1.MX0J1Q Arachis hypogaea HOM05D004555 ORTHO05D005305 7.0e-85 317.8 225 67.1
Lj4P789T31 Lonicera japonica HOM05D004555 ORTHO05D005305 9.1e-85 317.4 214 69.2
Glyma.17G253500 Glycine max HOM05D004555 ORTHO05D005305 2.6e-84 315.8 224 67.9
Gohir.D05G194000 Gossypium hirsutum HOM05D004555 ORTHO05D005305 2.6e-84 315.8 220 68.2
Gorai.009G199000 Gossypium raimondii HOM05D004555 ORTHO05D005305 2.6e-84 315.8 220 68.2
Sabra02G0025300 Salix brachista HOM05D004555 ORTHO05D005305 3.5e-84 315.5 228 67.5
Lj5g0004312 Lotus japonicus HOM05D004555 ORTHO05D005305 7.7e-84 314.3 218 67.4
Medtr1g022950 Medicago truncatula HOM05D004555 ORTHO05D005305 1.3e-83 313.5 223 68.2
Gohir.A05G190600 Gossypium hirsutum HOM05D004555 ORTHO05D005305 2.2e-83 312.8 220 67.3
QL02p009603 Quercus lobata HOM05D004555 ORTHO05D005305 2.2e-83 312.8 218 69.7
arahy.Tifrunner.gnm1.ann1.LAIT0P Arachis hypogaea HOM05D004555 ORTHO05D005305 2.9e-83 312.4 226 66.4
THA.LOC104814152 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 2.9e-83 312.4 214 68.2
Glyma.14G071100 Glycine max HOM05D004555 ORTHO05D005305 3.8e-83 312.0 224 67.0
AL1G49880 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 5.0e-83 311.6 229 65.9
Carub.0001s3280 Capsella rubella HOM05D004555 ORTHO05D005305 6.5e-83 311.2 229 65.9
Sed0025869 Sechium edule HOM05D004555 ORTHO05D005305 6.5e-83 311.2 216 67.1
Eucgr.F01860 Eucalyptus grandis HOM05D004555 ORTHO05D005305 8.5e-83 310.8 225 68.0
AT1G35180 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 1.1e-82 310.5 232 64.7
Thecc.08G033700 Theobroma cacao HOM05D004555 ORTHO05D005305 1.5e-82 310.1 216 68.1
DCAR_022455 Daucus carota HOM05D004555 ORTHO05D005305 1.9e-82 309.7 222 67.1
Sp1g29900 Schrenkiella parvula HOM05D004555 ORTHO05D005305 5.5e-82 308.1 220 65.9
Atru.chr13.407 Acer truncatum HOM05D004555 ORTHO05D005305 9.4e-82 307.4 219 68.5
Cfa013877 Carpinus fangiana HOM05D004555 ORTHO05D005305 1.2e-81 307.0 220 67.7
COL.COLO4_26241 Corchorus olitorius HOM05D004555 ORTHO05D005305 1.2e-81 307.0 222 66.2
Nn1g05806 Nelumbo nucifera HOM05D004555 ORTHO05D005305 1.6e-81 306.6 225 66.7
Thecc.08G033500 Theobroma cacao HOM05D004555 ORTHO05D005305 2.1e-81 306.2 213 68.5
TPR.G30491 Trifolium pratense HOM05D004555 ORTHO05D005305 2.1e-81 306.2 227 64.3
ECA232G1060 Erigeron canadensis HOM05D004555 ORTHO05D005305 6.1e-81 304.7 202 70.8
PSO724G1102 Papaver somniferum HOM05D004555 ORTHO05D005305 1.0e-80 303.9 229 65.9
EL10Ac1g00613 Beta vulgaris HOM05D004555 ORTHO05D005305 4.0e-80 302.0 220 67.7
BcaB03g13672 Brassica carinata HOM05D004555 ORTHO05D005305 4.0e-80 302.0 229 63.3
A05p23860 Brassica napus HOM05D004555 ORTHO05D005305 4.0e-80 302.0 224 64.7
BraA05t21262Z Brassica rapa HOM05D004555 ORTHO05D005305 4.0e-80 302.0 224 64.7
MBI16_g23832_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 4.0e-80 302.0 230 65.7
Thhalv10001837m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 6.7e-80 301.2 224 65.2
CARHR288350 Cardamine hirsuta HOM05D004555 ORTHO05D005305 1.5e-79 300.1 219 64.8
BcaC05g27748 Brassica carinata HOM05D004555 ORTHO05D005305 3.3e-79 298.9 224 63.8
C05p37330 Brassica napus HOM05D004555 ORTHO05D005305 3.3e-79 298.9 224 63.8
Phvul.001G011500 Phaseolus vulgaris HOM05D004555 ORTHO05D005305 7.5e-79 297.7 212 66.0
BolC5t32477H Brassica oleracea HOM05D004555 ORTHO05D005305 9.7e-79 297.4 224 64.3
VMungo0647G2091 Vigna mungo HOM05D004555 ORTHO05D005305 9.7e-79 297.4 215 65.6
TWI56G1140 Tripterygium wilfordii HOM05D004555 ORTHO05D005305 1.7e-78 296.6 245 61.2
Duzib116G0274 Durio zibethinus HOM05D004555 ORTHO05D005305 2.2e-78 296.2 195 72.3
Peaxi162Scf00064g00530 Petunia axillaris HOM05D000012 ORTHO05D000567 8.2e-78 294.3 220 65.0
BcaB04g17579 Brassica carinata HOM05D004555 ORTHO05D005305 1.1e-77 293.9 229 61.6
COL.COLO4_26242 Corchorus olitorius HOM05D004555 ORTHO05D005305 1.1e-77 293.9 187 73.8
Sp1g33840 Schrenkiella parvula HOM05D004555 ORTHO05D005305 1.4e-77 293.5 217 64.5
PSO729G0189 Papaver somniferum HOM05D004555 ORTHO05D005305 1.8e-77 293.1 250 60.8
Thhalv10011751m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 3.1e-77 292.4 226 61.5
Hund17186 Selenicereus undatus HOM05D004555 ORTHO05D005305 1.6e-76 290.0 227 63.9
AT1G35170 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 2.7e-76 289.3 229 62.0
A08p06280 Brassica napus HOM05D004555 ORTHO05D005305 5.9e-76 288.1 230 60.9
BraA08t32631Z Brassica rapa HOM05D004555 ORTHO05D005305 5.9e-76 288.1 230 60.9
BcaC07g37280 Brassica carinata HOM05D004555 ORTHO05D005305 1.7e-75 286.6 230 60.4
C08p07100 Brassica napus HOM05D004555 ORTHO05D005305 1.7e-75 286.6 230 60.4
BolC8t47554H Brassica oleracea HOM05D004555 ORTHO05D005305 1.7e-75 286.6 230 60.4
BraA02t08192Z Brassica rapa HOM05D004555 ORTHO05D005305 2.9e-75 285.8 230 60.0
Nitab4.5_0007928g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 6.5e-75 284.6 243 60.1
AL1G52650 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 8.5e-75 284.3 229 61.6
Cpa.g.sc99.8 Carica papaya HOM05D004555 ORTHO05D005305 1.5e-74 283.5 214 68.7
Psat6g009720 Pisum sativum HOM05D004555 ORTHO05D005305 1.9e-74 283.1 194 69.6
unitig_26.g9839 Utricularia gibba HOM05D004555 ORTHO05D005305 1.9e-74 283.1 210 63.8
A02p31830 Brassica napus HOM05D004555 ORTHO05D005305 2.5e-74 282.7 230 59.1
Hund17243 Selenicereus undatus HOM05D004555 ORTHO05D005305 2.5e-74 282.7 230 61.3
Oeu030598.1 Olea europaea HOM05D004555 ORTHO05D005305 4.2e-74 282.0 230 63.0
AUR62014481 Chenopodium quinoa HOM05D004555 ORTHO05D005305 5.5e-74 281.6 220 62.3
Carub.0001s3550 Capsella rubella HOM05D004555 ORTHO05D005305 9.4e-74 280.8 217 64.1
vmacro04301 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 9.4e-74 280.8 194 70.6
vmacro22853 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 9.4e-74 280.8 194 70.6
SalBow7G0356 Salvia bowleyana HOM05D004555 ORTHO05D005305 1.2e-73 280.4 283 53.7
AT1G45010 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 1.6e-73 280.0 229 61.1
Haze_22549 Corylus avellana HOM05D004555 ORTHO05D005305 8.0e-73 277.7 192 69.3
Hma1.2p1_1194F.1_g265760 Hydrangea macrophylla HOM05D004555 ORTHO05D005305 1.7e-70 270.0 187 70.1
Cc10_g14070 Coffea canephora HOM05D004555 ORTHO05D005305 2.2e-70 269.6 213 63.4
Manes.18G021200 Manihot esculenta HOM05D004555 ORTHO05D005305 6.3e-70 268.1 218 61.9
Nitab4.5_0000577g0020 Nicotiana tabacum HOM05D004555 ORTHO05D005305 3.1e-69 265.8 220 60.9
Os01g0262500 Oryza sativa ssp. japonica HOM05D004555 ORTHO05D005305 4.1e-69 265.4 217 58.5
BcaC03g17015 Brassica carinata HOM05D004555 ORTHO05D005305 4.5e-68 261.9 235 57.0
BolC2t11011H Brassica oleracea HOM05D004555 ORTHO05D005305 4.5e-68 261.9 235 57.0
ATR1154G019 Amborella trichopoda HOM05D004555 ORTHO05D005305 1.2e-65 253.8 191 63.4
SEGI_11700 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 1.2e-65 253.8 204 58.3
CARHR036190 Cardamine hirsuta HOM05D004555 ORTHO05D005305 8.0e-65 251.1 193 60.1
AUR62034520 Chenopodium quinoa HOM05D004555 ORTHO05D005305 6.8e-64 248.1 184 64.7
MELO3C010969.2 Cucumis melo HOM05D004555 ORTHO05D005305 2.0e-63 246.5 157 73.9
Nitab4.5_0001091g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 3.1e-61 239.2 220 56.4
Cc10_g02450 Coffea canephora HOM05D004555 ORTHO05D005305 1.6e-60 236.9 150 71.3
Aa31LG6G8640 Aethionema arabicum HOM05D004555 ORTHO05D005305 5.9e-60 235.0 180 66.7
TPR.G17924 Trifolium pratense HOM05D004555 ORTHO05D005305 4.3e-58 228.8 161 65.8
Sopen04g034340 Solanum pennellii HOM05D004555 ORTHO05D005305 5.6e-58 228.4 147 71.4
Zm00001eb333330 Zea mays HOM05D004555 ORTHO05D005305 1.6e-57 226.9 204 53.4
Sed0024456 Sechium edule HOM05D004555 ORTHO05D005305 2.0e-55 219.9 177 61.6
C02p49220 Brassica napus HOM05D004555 ORTHO05D005305 5.8e-55 218.4 201 56.2
MBI16_g23833_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 7.5e-55 218.0 240 51.2
Nitab4.5_0001861g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 2.0e-52 209.9 217 50.7
AagrBONN_evm.TU.Sc2ySwM_369.584 Anthoceros agrestis HOM05D004555 ORTHO05D005305 2.7e-52 209.5 210 48.1
SMO259G0011 Selaginella moellendorffii HOM05D004555 ORTHO05D005305 4.6e-52 208.8 213 48.8
FAN20G2579 Fragaria x ananassa HOM05D004555 ORTHO05D005305 7.8e-52 208.0 222 52.7
Mapoly0020s0017 Marchantia polymorpha HOM05D004555 ORTHO05D005305 6.6e-51 204.9 213 46.9
SEGI_31948 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 1.6e-49 200.3 144 62.5
HanXRQChr09g0269541 Helianthus annuus HOM05D004555 ORTHO05D005305 9.5e-42 174.5 118 70.3
TPR.G29885 Trifolium pratense HOM05D004555 ORTHO05D005305 2.6e-39 166.4 121 64.5
Lalb_Chr14g0369521 Lupinus albus HOM05D004555 ORTHO05D005305 7.5e-39 164.9 112 63.4
CBR_g32335 Chara braunii HOM05D004555 ORTHO05D005305 8.3e-38 161.4 197 44.7
Nitab4.5_0007928g0040 Nicotiana tabacum HOM05D004555 ORTHO05D005305 5.2e-32 142.1 131 52.7
Haze_22557 Corylus avellana HOM05D004555 ORTHO05D005305 4.9e-30 135.6 90 70.0
Pp3c7_6700 Physcomitrium patens HOM05D004555 ORTHO05D005305 2.1e-28 130.2 147 42.9
Lalb_Chr14g0369531 Lupinus albus HOM05D004555 ORTHO05D005305 4.6e-28 129.0 84 72.6
MCO11G540 Micromonas commoda HOM05D004555 ORTHO05D005305 2.1e-25 120.2 209 34.9
vmacro04300 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 1.4e-21 107.5 150 42.7
vmacro22852 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 1.4e-21 107.5 150 42.7
PGR031G0233 Punica granatum HOM05D004555 ORTHO05D005305 2.8e-17 93.2 70 60.0
QL02p009653 Quercus lobata HOM05D004555 ORTHO05D005305 1.4e-16 90.9 64 68.8
CARHR263530 Cardamine hirsuta HOM05D004555 ORTHO05D005305 3.1e-16 89.7 69 65.2
Cc11_g05350 Coffea canephora HOM05D004555 ORTHO05D005305 3.1e-16 89.7 69 60.9
Hund17190 Selenicereus undatus HOM05D004555 ORTHO05D005305 8.4e-14 81.6 79 55.7
CAN.G851.44 Capsicum annuum HOM05D007089 ORTHO05D005305 7.1e-13 78.6 46 73.9
ClCG02G018910 Citrullus lanatus HOM05D001742 ORTHO05D001689 1.2e-07 61.2 206 28.6
arahy.Tifrunner.gnm1.ann1.5FL4AU Arachis hypogaea HOM05D000229 ORTHO05D005305 2.6e-07 60.1 38 65.8
CAN.G1190.2 Capsicum annuum HOM05D001742 ORTHO05D001689 5.8e-07 58.9 221 25.8
CsaV3_6G013280 Cucumis sativus L. HOM05D001742 ORTHO05D001689 8.4e-06 55.1 205 27.8
HanXRQChr09g0269551 Helianthus annuus HOM05D004555 ORTHO05D005305 8.4e-06 55.1 50 56.0


User provided reference genes

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