Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G0942 Cannabis sativa HOM05D006153 ORTHO05D007701 7.6e-86 320.5 163 100.0
MD10G1102200 Malus domestica HOM05D006153 ORTHO05D007701 5.6e-20 101.7 160 40.6
TWI23G0900 Tripterygium wilfordii HOM05D006153 ORTHO05D007701 1.8e-18 96.7 59 69.5
Potri.001G296900 Populus trichocarpa HOM05D006153 ORTHO05D007701 2.3e-18 96.3 60 70.0
Thecc.02G113400 Theobroma cacao HOM05D006153 ORTHO05D007701 4.0e-18 95.5 62 66.1
MD05G1096000 Malus domestica HOM05D006153 ORTHO05D007701 5.2e-18 95.1 160 38.1
Manes.07G064400 Manihot esculenta HOM05D006153 ORTHO05D007701 5.2e-18 95.1 56 69.6
Duzib132G0541 Durio zibethinus HOM05D006153 ORTHO05D007701 2.0e-17 93.2 68 61.8
Hund06709 Selenicereus undatus HOM05D006153 ORTHO05D007701 2.6e-17 92.8 85 48.2
Potri.009G091100 Populus trichocarpa HOM05D006153 ORTHO05D007701 5.8e-17 91.7 53 73.6
Dinv42217 Davidia involucrata HOM05D006153 ORTHO05D007701 7.5e-17 91.3 54 72.2
Ciclev10029838m.g Citrus clementina HOM05D006153 ORTHO05D007701 1.7e-16 90.1 53 71.7
Dinv15786 Davidia involucrata HOM05D006153 ORTHO05D007701 2.2e-16 89.7 64 62.5
Sc14g0002580 Simmondsia chinensis HOM05D006153 ORTHO05D007701 2.9e-16 89.4 64 64.1
TAR381G0917 Trochodendron aralioides HOM05D006153 ORTHO05D007701 3.7e-16 89.0 57 64.9
RcHm_v2.0_Chr6g0253971 Rosa chinensis HOM05D006153 ORTHO05D007701 4.9e-16 88.6 159 38.4
CiPaw.05G015200 Carya illinoinensis HOM05D006153 ORTHO05D007701 1.4e-15 87.0 58 63.8
Cpa.g.sc200.7 Carica papaya HOM05D006153 ORTHO05D007701 1.9e-15 86.7 53 69.8
Prupe.8G140400 Prunus persica HOM05D006153 ORTHO05D007701 1.9e-15 86.7 69 65.2
FAN24G1230 Fragaria x ananassa HOM05D006153 ORTHO05D007701 2.4e-15 86.3 159 37.7
Sabra16G0186000 Salix brachista HOM05D006153 ORTHO05D007701 2.4e-15 86.3 45 80.0
Duzib052G0610 Durio zibethinus HOM05D006153 ORTHO05D007701 3.2e-15 85.9 67 55.2
FAN20G1027 Fragaria x ananassa HOM05D006153 ORTHO05D007701 3.2e-15 85.9 159 37.7
Sabra09G0070400 Salix brachista HOM05D006153 ORTHO05D007701 4.1e-15 85.5 62 62.9
Gohir.A01G008400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 5.4e-15 85.1 69 59.4
GSVIVG01037873001 Vitis vinifera HOM05D006153 ORTHO05D007701 5.4e-15 85.1 51 72.5
FvH4_2g04480 Fragaria vesca HOM05D006153 ORTHO05D007701 7.0e-15 84.7 67 61.2
FAN27G0726 Fragaria x ananassa HOM05D006153 ORTHO05D007701 7.0e-15 84.7 67 61.2
COL.COLO4_32545 Corchorus olitorius HOM05D006153 ORTHO05D007701 1.6e-14 83.6 53 67.9
Lalb_Chr06g0165291 Lupinus albus HOM05D006153 ORTHO05D007701 1.6e-14 83.6 60 63.3
Haze_10299 Corylus avellana HOM05D006153 ORTHO05D007701 2.0e-14 83.2 56 64.3
FAN15G1936 Fragaria x ananassa HOM05D006153 ORTHO05D007701 2.0e-14 83.2 67 62.7
DCAR_001679 Daucus carota HOM05D006153 ORTHO05D007701 2.7e-14 82.8 51 74.5
Gohir.D13G044400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 2.7e-14 82.8 64 60.9
Gorai.013G049200 Gossypium raimondii HOM05D006153 ORTHO05D007701 2.7e-14 82.8 64 60.9
Manes.10G074900 Manihot esculenta HOM05D006153 ORTHO05D007701 2.7e-14 82.8 65 60.0
QL11p031990 Quercus lobata HOM05D006153 ORTHO05D007701 3.5e-14 82.4 59 61.0
GSVIVG01037871001 Vitis vinifera HOM05D006153 ORTHO05D007701 3.5e-14 82.4 50 72.0
Gorai.002G009800 Gossypium raimondii HOM05D006153 ORTHO05D007701 4.6e-14 82.0 69 58.0
AUR62027357 Chenopodium quinoa HOM05D006153 ORTHO05D007701 6.0e-14 81.6 61 50.8
Haze_10289 Corylus avellana HOM05D006153 ORTHO05D007701 7.8e-14 81.3 64 51.6
Cfa004694 Carpinus fangiana HOM05D006153 ORTHO05D007701 1.0e-13 80.9 61 59.0
Nitab4.5_0001105g0220 Nicotiana tabacum HOM05D006153 ORTHO05D007701 1.0e-13 80.9 64 56.2
Nitab4.5_0004685g0060 Nicotiana tabacum HOM05D006153 ORTHO05D007701 1.0e-13 80.9 64 56.2
GSVIVG01037872001 Vitis vinifera HOM05D006153 ORTHO05D007701 1.0e-13 80.9 50 70.0
AT3G19550 Arabidopsis thaliana HOM05D006153 ORTHO05D007701 1.3e-13 80.5 54 64.8
CARHR094970 Cardamine hirsuta HOM05D006153 ORTHO05D007701 1.7e-13 80.1 54 64.8
DCAR_001674 Daucus carota HOM05D006153 ORTHO05D007701 1.7e-13 80.1 53 69.8
arahy.Tifrunner.gnm1.ann1.EHR7LK Arachis hypogaea HOM05D006153 ORTHO05D007701 2.3e-13 79.7 43 79.1
Nitab4.5_0002017g0030 Nicotiana tabacum HOM05D006153 ORTHO05D007701 2.3e-13 79.7 66 57.6
AUR62031329 Chenopodium quinoa HOM05D006153 ORTHO05D007701 3.0e-13 79.3 61 49.2
Glyma.20G131700 Glycine max HOM05D006153 ORTHO05D007701 3.0e-13 79.3 146 35.6
PGR042G3678 Punica granatum HOM05D006153 ORTHO05D007701 3.0e-13 79.3 53 62.3
CSS0010428 Camellia sinensis var. sinensis HOM05D006153 ORTHO05D007701 3.9e-13 79.0 53 67.9
Nitab4.5_0012681g0010 Nicotiana tabacum HOM05D006153 ORTHO05D007701 3.9e-13 79.0 64 57.8
AL3G32960 Arabidopsis lyrata HOM05D006153 ORTHO05D007701 5.0e-13 78.6 54 63.0
Phvul.007G043000 Phaseolus vulgaris HOM05D006153 ORTHO05D007701 5.0e-13 78.6 146 37.0
Actinidia34374 Actinidia chinensis HOM05D006153 ORTHO05D007701 6.6e-13 78.2 50 70.0
Haze_10254 Corylus avellana HOM05D006153 ORTHO05D007701 8.6e-13 77.8 62 58.1
BcaC05g28465 Brassica carinata HOM05D006153 ORTHO05D007701 1.1e-12 77.4 48 68.8
A05p30090 Brassica napus HOM05D006153 ORTHO05D007701 1.1e-12 77.4 48 68.8
C05p45510 Brassica napus HOM05D006153 ORTHO05D007701 1.1e-12 77.4 48 68.8
BolC5t33274H Brassica oleracea HOM05D006153 ORTHO05D007701 1.1e-12 77.4 48 68.8
BraA05t21849Z Brassica rapa HOM05D006153 ORTHO05D007701 1.1e-12 77.4 48 68.8
QL11p029270 Quercus lobata HOM05D006153 ORTHO05D007701 1.1e-12 77.4 74 51.4
Solyc01g107280.3 Solanum lycopersicum HOM05D006153 ORTHO05D007701 1.1e-12 77.4 62 54.8
Sopen01g049530 Solanum pennellii HOM05D006153 ORTHO05D007701 1.1e-12 77.4 62 54.8
VMungo0720G0345 Vigna mungo HOM05D006153 ORTHO05D007701 1.1e-12 77.4 146 35.6
Nn5g30510 Nelumbo nucifera HOM05D006153 ORTHO05D007701 1.5e-12 77.0 54 57.4
Oeu013772.1 Olea europaea HOM05D006153 ORTHO05D007701 1.5e-12 77.0 57 52.6
Glyma.10G259200 Glycine max HOM05D006153 ORTHO05D007701 1.9e-12 76.6 146 35.6
Peaxi162Scf00016g00267 Petunia axillaris HOM05D006153 ORTHO05D007701 1.9e-12 76.6 55 65.5
BcaB06g26014 Brassica carinata HOM05D006153 ORTHO05D007701 3.3e-12 75.9 48 66.7
Carub.0003s1938 Capsella rubella HOM05D006153 ORTHO05D007701 4.3e-12 75.5 49 65.3
Hma1.2p1_1174F.1_g263880 Hydrangea macrophylla HOM05D006153 ORTHO05D007701 4.3e-12 75.5 60 55.0
Eucgr.G00438 Eucalyptus grandis HOM05D006153 ORTHO05D007701 5.6e-12 75.1 48 64.6
DCAR_003609 Daucus carota HOM05D006153 ORTHO05D007701 7.3e-12 74.7 51 66.7
Lalb_Chr02g0145121 Lupinus albus HOM05D006153 ORTHO05D007701 7.3e-12 74.7 47 63.8
Sp3g17600 Schrenkiella parvula HOM05D006153 ORTHO05D007701 7.3e-12 74.7 48 68.8
EL10Ac8g19360 Beta vulgaris HOM05D006153 ORTHO05D007701 1.6e-11 73.6 58 53.4
Peaxi162Scf00152g00320 Petunia axillaris HOM05D006153 ORTHO05D007701 1.6e-11 73.6 59 55.9
A01p35140 Brassica napus HOM05D006153 ORTHO05D007701 2.1e-11 73.2 48 66.7
BraA01t03596Z Brassica rapa HOM05D006153 ORTHO05D007701 2.1e-11 73.2 48 66.7
Thhalv10021914m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 2.8e-11 72.8 48 66.7
PSO541G5112 Papaver somniferum HOM05D006153 ORTHO05D007701 2.8e-11 72.8 45 68.9
Peaxi162Scf00003g00261 Petunia axillaris HOM05D006153 ORTHO05D007701 2.8e-11 72.8 49 65.3
BcaB04g20696 Brassica carinata HOM05D006153 ORTHO05D007701 4.7e-11 72.0 48 64.6
PGSC0003DMG400025850 Solanum tuberosum HOM05D006153 ORTHO05D007701 6.2e-11 71.6 68 47.1
A01p35130 Brassica napus HOM05D006153 ORTHO05D007701 8.0e-11 71.2 47 66.0
BraA01t03595Z Brassica rapa HOM05D006153 ORTHO05D007701 8.0e-11 71.2 47 66.0
Aa31LG8G6290 Aethionema arabicum HOM05D006153 ORTHO05D007701 1.1e-10 70.9 57 57.9
Thhalv10021904m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 1.4e-10 70.5 48 64.6
MBI16_g15146_MAGBIO Magnolia biondii HOM05D006153 ORTHO05D007701 1.4e-10 70.5 50 64.0
Sed0025917 Sechium edule HOM05D006153 ORTHO05D007701 1.8e-10 70.1 54 57.4
Actinidia27982 Actinidia chinensis HOM05D006153 ORTHO05D007701 2.3e-10 69.7 48 62.5
Lj1g0020403 Lotus japonicus HOM05D006153 ORTHO05D007701 3.1e-10 69.3 55 58.2
Migut.I00275 Erythranthe guttata HOM05D006153 ORTHO05D007701 6.8e-10 68.2 54 51.9
Aqoxy6G02752 Aquilegia oxysepala HOM05D006153 ORTHO05D007701 8.9e-10 67.8 56 58.9
BcaB04g20697 Brassica carinata HOM05D006153 ORTHO05D007701 8.9e-10 67.8 48 62.5
BcaC09g48920 Brassica carinata HOM05D006153 ORTHO05D007701 8.9e-10 67.8 48 62.5
C01p44580 Brassica napus HOM05D006153 ORTHO05D007701 8.9e-10 67.8 48 62.5
BolC1t04422H Brassica oleracea HOM05D006153 ORTHO05D007701 8.9e-10 67.8 48 62.5
ClCG02G006680 Citrullus lanatus HOM05D006153 ORTHO05D007701 2.0e-09 66.6 50 56.0
HanXRQChr16g0514451 Helianthus annuus HOM05D006153 ORTHO05D007701 2.6e-09 66.2 43 67.4
CsaV3_7G007950 Cucumis sativus L. HOM05D006153 ORTHO05D007701 3.4e-09 65.9 50 56.0
HanXRQChr16g0514921 Helianthus annuus HOM05D006153 ORTHO05D007701 4.4e-09 65.5 41 65.9
ATR0030G019 Amborella trichopoda HOM05D006153 ORTHO05D007701 5.8e-09 65.1 47 57.4
Lj5g0020623 Lotus japonicus HOM05D006153 ORTHO05D007701 5.8e-09 65.1 52 55.8
Cfa004655 Carpinus fangiana HOM05D006153 ORTHO05D007701 1.7e-08 63.5 51 60.8
Rhsim05G0089900 Rhododendron simsii HOM05D006153 ORTHO05D007701 1.7e-08 63.5 52 57.7
Os12g0507700 Oryza sativa ssp. japonica HOM05D006153 ORTHO05D007701 2.2e-08 63.2 57 50.9
MELO3C018509.2 Cucumis melo HOM05D006153 ORTHO05D007701 3.7e-08 62.4 45 57.8
HanXRQChr16g0514901 Helianthus annuus HOM05D006153 ORTHO05D007701 6.4e-08 61.6 40 65.0
Lj5g0024415 Lotus japonicus HOM05D006153 ORTHO05D007701 6.4e-08 61.6 50 54.0
HanXRQChr13g0425861 Helianthus annuus HOM05D006153 ORTHO05D007701 8.3e-08 61.2 40 62.5
Zm00001eb138020 Zea mays HOM05D006153 ORTHO05D007701 8.3e-08 61.2 43 60.5
Zm00001eb264740 Zea mays HOM05D006153 ORTHO05D007701 8.3e-08 61.2 43 60.5
Lsat_1_v5_gn_5_114460 Lactuca sativa HOM05D006153 ORTHO05D007701 1.9e-07 60.1 40 62.5
HanXRQChr16g0514461 Helianthus annuus HOM05D006153 ORTHO05D007701 3.2e-07 59.3 42 61.9
SGA_v2.0_scaffold624G53237 Striga asiatica HOM05D006153 ORTHO05D007701 4.1e-07 58.9 43 58.1
Ca_24350_v3 Cicer arietinum L. HOM05D006153 ORTHO05D007701 9.2e-07 57.8 51 49.0
ECA234G4313 Erigeron canadensis HOM05D006153 ORTHO05D007701 1.6e-06 57.0 42 57.1
Gohir.A13G045400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 2.7e-06 56.2 32 71.9
Medtr5g005180 Medicago truncatula HOM05D006153 ORTHO05D007701 2.7e-06 56.2 43 53.5


User provided reference genes

Program Settings