Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G0941 Cannabis sativa HOM05D004406 ORTHO05D005660 1.7e-287 991.9 482 100.0
Prupe.4G148400 Prunus persica HOM05D004406 ORTHO05D005660 1.4e-233 812.8 482 81.7
TAR376G0792 Trochodendron aralioides HOM05D004406 ORTHO05D005660 3.7e-229 798.1 486 78.8
FvH4_3g16570 Fragaria vesca HOM05D004406 ORTHO05D005660 1.1e-228 796.6 482 79.9
MD05G1209100 Malus domestica HOM05D004406 ORTHO05D005660 4.1e-228 794.7 477 81.6
RcHm_v2.0_Chr5g0027601 Rosa chinensis HOM05D004406 ORTHO05D005660 5.3e-228 794.3 482 79.9
FAN11G0596 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.1e-225 786.6 472 80.1
Potri.001G394300 Populus trichocarpa HOM05D004406 ORTHO05D005660 1.9e-225 785.8 474 80.2
FAN25G0744 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.5e-225 785.4 472 79.9
FAN21G0297 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.4e-223 779.6 472 79.2
Manes.10G061001 Manihot esculenta HOM05D004406 ORTHO05D005660 1.5e-222 776.2 470 78.5
TWI38G2065 Tripterygium wilfordii HOM05D004406 ORTHO05D005660 9.7e-222 773.5 487 77.8
GSVIVG01009332001 Vitis vinifera HOM05D004406 ORTHO05D005660 3.5e-219 765.0 474 78.3
CSS0020755 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 5.9e-219 764.2 475 77.9
CiPaw.01G106500 Carya illinoinensis HOM05D004406 ORTHO05D005660 2.9e-218 761.9 480 77.7
VMungo1080G1685 Vigna mungo HOM05D004406 ORTHO05D005660 2.9e-218 761.9 483 76.6
arahy.Tifrunner.gnm1.ann1.L0EV17 Arachis hypogaea HOM05D004406 ORTHO05D005660 3.8e-218 761.5 475 76.6
Dinv26661 Davidia involucrata HOM05D004406 ORTHO05D005660 1.5e-217 759.6 477 77.4
Gorai.007G217900 Gossypium raimondii HOM05D004406 ORTHO05D005660 1.9e-217 759.2 477 76.9
Gohir.D11G203200 Gossypium hirsutum HOM05D004406 ORTHO05D005660 2.5e-217 758.8 477 76.9
Lalb_Chr25g0284911 Lupinus albus HOM05D004406 ORTHO05D005660 5.5e-217 757.7 475 77.1
Lj1C808G13 Lonicera japonica HOM05D004406 ORTHO05D005660 7.2e-217 757.3 468 78.2
Lj3g0010925 Lotus japonicus HOM05D004406 ORTHO05D005660 9.4e-217 756.9 475 75.6
COL.COLO4_35795 Corchorus olitorius HOM05D004406 ORTHO05D005660 8.0e-216 753.8 470 77.2
Phvul.005G057900 Phaseolus vulgaris HOM05D004406 ORTHO05D005660 8.0e-216 753.8 475 76.6
Cfa019935 Carpinus fangiana HOM05D004406 ORTHO05D005660 1.4e-215 753.1 468 77.4
Ca_03669_v3 Cicer arietinum L. HOM05D004406 ORTHO05D005660 1.4e-215 753.1 468 76.9
MD10G1195500 Malus domestica HOM05D004406 ORTHO05D005660 3.0e-215 751.9 458 80.1
Ciclev10001005m.g Citrus clementina HOM05D004406 ORTHO05D005660 4.0e-215 751.5 482 76.3
Glyma.15G256700 Glycine max HOM05D004406 ORTHO05D005660 5.2e-215 751.1 471 76.2
Nn5g30617 Nelumbo nucifera HOM05D004406 ORTHO05D005660 6.7e-215 750.7 476 76.7
Thecc.01G135800 Theobroma cacao HOM05D004406 ORTHO05D005660 2.0e-214 749.2 474 76.8
Actinidia18837 Actinidia chinensis HOM05D004406 ORTHO05D005660 4.4e-214 748.0 472 77.5
TAR628G1650 Trochodendron aralioides HOM05D004406 ORTHO05D005660 5.7e-214 747.7 469 77.4
Gohir.A11G220400 Gossypium hirsutum HOM05D004406 ORTHO05D005660 2.2e-213 745.7 477 75.7
Atru.chr9.1518 Acer truncatum HOM05D004406 ORTHO05D005660 6.3e-213 744.2 469 77.0
Medtr2g069330 Medicago truncatula HOM05D004406 ORTHO05D005660 8.2e-213 743.8 474 74.5
Psat1g012120 Pisum sativum HOM05D004406 ORTHO05D005660 4.1e-212 741.5 475 74.7
Sc03g0007790 Simmondsia chinensis HOM05D004406 ORTHO05D005660 1.2e-211 740.0 477 75.1
Aqoxy6G02573 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 4.5e-211 738.0 473 74.6
Eucgr.F01412 Eucalyptus grandis HOM05D004406 ORTHO05D005660 7.7e-211 737.3 477 75.1
PSO170G0587 Papaver somniferum HOM05D004406 ORTHO05D005660 3.8e-210 734.9 471 74.9
HanXRQChr11g0329941 Helianthus annuus HOM05D004406 ORTHO05D005660 7.2e-209 730.7 474 75.7
PSO528G0243 Papaver somniferum HOM05D004406 ORTHO05D005660 9.4e-209 730.3 471 74.3
MSTRG.6706 Avicennia marina HOM05D004406 ORTHO05D005660 3.6e-208 728.4 477 72.5
Cpa.g.sc132.61 Carica papaya HOM05D004406 ORTHO05D005660 6.1e-208 727.6 477 75.9
Aqoxy6G03019 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 1.0e-207 726.9 474 72.8
Hund02309 Selenicereus undatus HOM05D004406 ORTHO05D005660 9.8e-206 720.3 475 73.3
Migut.M00660 Erythranthe guttata HOM05D004406 ORTHO05D005660 6.3e-205 717.6 474 72.6
arahy.Tifrunner.gnm1.ann1.BTSV3Q Arachis hypogaea HOM05D004406 ORTHO05D005660 7.0e-204 714.1 475 73.7
Cc05_g10180 Coffea canephora HOM05D004406 ORTHO05D005660 2.7e-203 712.2 469 70.8
ECA236G4460 Erigeron canadensis HOM05D004406 ORTHO05D005660 3.5e-203 711.8 479 73.9
FAN16G0888 Fragaria x ananassa HOM05D004406 ORTHO05D005660 5.9e-203 711.1 474 74.7
EL10Ac9g22869 Beta vulgaris HOM05D004406 ORTHO05D005660 8.6e-202 707.2 469 72.5
vmacro15158 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 1.1e-201 706.8 440 77.0
vmacro12019 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 1.9e-201 706.1 452 75.2
Sed0020103 Sechium edule HOM05D004406 ORTHO05D005660 9.5e-201 703.7 472 72.2
QL04p076605 Quercus lobata HOM05D004406 ORTHO05D005660 2.3e-199 699.1 429 77.9
Solyc10g078480.2 Solanum lycopersicum HOM05D004406 ORTHO05D005660 3.4e-198 695.3 494 71.1
Sopen10g029140 Solanum pennellii HOM05D004406 ORTHO05D005660 9.8e-198 693.7 491 71.1
Peaxi162Scf00003g04835 Petunia axillaris HOM05D004406 ORTHO05D005660 1.3e-197 693.3 486 71.4
PGSC0003DMG400008359 Solanum tuberosum HOM05D004406 ORTHO05D005660 1.3e-197 693.3 491 71.1
Oeu002771.1 Olea europaea HOM05D004406 ORTHO05D005660 2.2e-197 692.6 453 74.2
unitig_62.g23080 Utricularia gibba HOM05D004406 ORTHO05D005660 8.3e-197 690.6 476 69.1
Dinv13306 Davidia involucrata HOM05D004406 ORTHO05D005660 1.8e-196 689.5 435 77.0
Haze_15516 Corylus avellana HOM05D004406 ORTHO05D005660 1.6e-195 686.4 489 70.3
CsaV3_5G023450 Cucumis sativus L. HOM05D004406 ORTHO05D005660 1.3e-194 683.3 477 70.4
ClCG03G009170 Citrullus lanatus HOM05D004406 ORTHO05D005660 2.3e-194 682.6 475 70.3
Oeu044427.1 Olea europaea HOM05D004406 ORTHO05D005660 3.8e-194 681.8 542 63.7
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 5.6e-193 677.9 483 71.0
ATR0739G109 Amborella trichopoda HOM05D004406 ORTHO05D005660 3.6e-192 675.2 475 69.5
MELO3C022781.2 Cucumis melo HOM05D004406 ORTHO05D005660 3.6e-192 675.2 478 69.9
PGR004G1399 Punica granatum HOM05D004406 ORTHO05D005660 8.0e-192 674.1 475 70.5
Duzib187G2008 Durio zibethinus HOM05D004406 ORTHO05D005660 6.8e-191 671.0 472 71.6
AL1G28740 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 4.9e-189 664.8 477 70.0
Nitab4.5_0006279g0030 Nicotiana tabacum HOM05D004406 ORTHO05D005660 1.4e-188 663.3 491 68.6
Aa31LG7G1110 Aethionema arabicum HOM05D004406 ORTHO05D005660 3.2e-188 662.1 485 69.3
THA.LOC104808122 Tarenaya hassleriana HOM05D004406 ORTHO05D005660 5.4e-188 661.4 476 69.7
CARHR017050 Cardamine hirsuta HOM05D004406 ORTHO05D005660 1.6e-187 659.8 476 69.5
Aqoxy113s002 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 4.6e-187 658.3 415 75.7
Carub.0001s1633 Capsella rubella HOM05D004406 ORTHO05D005660 6.0e-187 657.9 478 69.7
Thhalv10007520m.g Eutrema salsugineum HOM05D004406 ORTHO05D005660 1.3e-186 656.8 477 69.6
AUR62017618 Chenopodium quinoa HOM05D004406 ORTHO05D005660 1.7e-186 656.4 426 73.7
Sp1g14730 Schrenkiella parvula HOM05D004406 ORTHO05D005660 3.0e-186 655.6 478 69.5
SGA_v2.0_scaffold73G24357 Striga asiatica HOM05D004406 ORTHO05D005660 5.0e-186 654.8 473 68.7
CDE06G1959 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 6.6e-186 654.4 497 65.8
AT1G16570 Arabidopsis thaliana HOM05D004406 ORTHO05D005660 8.6e-186 654.1 477 69.2
A09p60830 Brassica napus HOM05D004406 ORTHO05D005660 1.1e-185 653.7 476 68.9
BraA09t41456Z Brassica rapa HOM05D004406 ORTHO05D005660 1.1e-185 653.7 476 68.9
C05p14870 Brassica napus HOM05D004406 ORTHO05D005660 3.3e-185 652.1 473 69.8
BolC8t51983H Brassica oleracea HOM05D004406 ORTHO05D005660 2.1e-184 649.4 473 69.3
A06p12560 Brassica napus HOM05D004406 ORTHO05D005660 3.6e-184 648.7 473 70.0
Nitab4.5_0000812g0150 Nicotiana tabacum HOM05D004406 ORTHO05D005660 8.0e-184 647.5 483 67.5
BolC5t30202H Brassica oleracea HOM05D004406 ORTHO05D005660 1.1e-183 647.1 473 69.3
BraA06t24419Z Brassica rapa HOM05D004406 ORTHO05D005660 1.1e-183 647.1 473 69.8
C08p44420 Brassica napus HOM05D004406 ORTHO05D005660 8.9e-183 644.0 473 68.9
HPP92_025666 Vanilla planifolia HOM05D004406 ORTHO05D005660 1.7e-181 639.8 474 67.3
SEGI_06613 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 3.7e-181 638.6 516 61.0
Gohir.A09G004700 Gossypium hirsutum HOM05D004406 ORTHO05D005660 3.2e-180 635.6 474 69.0
DCAR_013800 Daucus carota HOM05D004406 ORTHO05D005660 5.4e-180 634.8 486 66.5
Zm00001eb401770 Zea mays HOM05D004406 ORTHO05D005660 3.0e-178 629.0 471 65.0
Os03g0180700 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 8.6e-178 627.5 479 64.3
Glyma.08G170200 Glycine max HOM05D004406 ORTHO05D005660 4.3e-177 625.2 416 72.1
SalBow5G0012 Salvia bowleyana HOM05D004406 ORTHO05D005660 1.1e-175 620.5 528 60.6
BcaC05g25520 Brassica carinata HOM05D004406 ORTHO05D005660 6.6e-170 601.3 449 67.5
TPR.G9754 Trifolium pratense HOM05D004406 ORTHO05D005660 3.1e-167 592.4 369 75.9
FAN21G3885 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.2e-165 586.3 351 79.2
Lsat_1_v5_gn_7_99701 Lactuca sativa HOM05D004406 ORTHO05D005660 5.4e-164 581.6 470 65.3
Rhsim06G0184400 Rhododendron simsii HOM05D004406 ORTHO05D005660 5.4e-164 581.6 472 65.5
CDE04G2964 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 9.2e-164 580.9 478 61.7
Mapoly0116s0013 Marchantia polymorpha HOM05D004406 ORTHO05D005660 4.0e-159 565.5 509 58.0
SalBow5G1666 Salvia bowleyana HOM05D004406 ORTHO05D005660 1.5e-158 563.5 408 66.9
Pp3c22_7820 Physcomitrium patens HOM05D004406 ORTHO05D005660 2.9e-157 559.3 488 59.0
SMO353G0172 Selaginella moellendorffii HOM05D004406 ORTHO05D005660 3.3e-153 545.8 474 60.5
AL6G51100 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 4.3e-153 545.4 469 62.0
Gohir.A11G222401 Gossypium hirsutum HOM05D004406 ORTHO05D005660 4.5e-150 535.4 364 72.5
Actinidia35181 Actinidia chinensis HOM05D004406 ORTHO05D005660 5.4e-148 528.5 472 59.3
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 2.7e-131 473.0 474 51.9
CBR_g37525 Chara braunii HOM05D004406 ORTHO05D005660 3.7e-128 462.6 548 46.0
Gorai.006G005600 Gossypium raimondii HOM05D004406 ORTHO05D005660 3.4e-126 456.1 472 53.2
Sabra16G0258600 Salix brachista HOM05D004406 ORTHO05D005660 2.3e-122 443.4 269 76.6
PSO017G0585 Papaver somniferum HOM05D004406 ORTHO05D005660 1.0e-114 417.9 307 66.1
Gorai.007G217600 Gossypium raimondii HOM05D004406 ORTHO05D005660 2.0e-110 403.7 330 65.8
Rhsim08G0107400 Rhododendron simsii HOM05D004406 ORTHO05D005660 2.2e-101 373.6 231 79.2
MCO08G055 Micromonas commoda HOM05D004406 ORTHO05D005660 2.3e-90 337.0 486 42.4
Gohir.D11G203050 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.7e-88 330.9 290 63.4
SHI18054 Sapria himalayana HOM05D004406 ORTHO05D005660 2.3e-85 320.5 272 62.1
Cre12.g516550 Chlamydomonas reinhardtii HOM05D004406 ORTHO05D005660 1.5e-84 317.8 375 45.6
SEGI_11739 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 3.0e-82 310.1 204 72.1
Haze_26719 Corylus avellana HOM05D004406 ORTHO05D005660 5.4e-79 299.3 493 36.9
PRCOL_00002569 Prasinoderma coloniale HOM05D004406 ORTHO05D005660 5.4e-71 272.7 505 36.8
SEGI_33737 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 3.6e-67 260.0 272 48.5
CSS0001722 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 4.7e-67 259.6 249 57.8
Cfa025278 Carpinus fangiana HOM05D004406 ORTHO05D005660 5.8e-65 252.7 463 37.1
SGA_v2.0_scaffold181G39778 Striga asiatica HOM05D004406 ORTHO05D005660 1.2e-62 245.0 459 37.0
FAN04G0447 Fragaria x ananassa HOM05D004406 ORTHO05D005660 3.5e-54 216.9 175 64.6
AL6G51070 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 1.1e-52 211.8 181 60.2
Actinidia18838 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.1e-50 205.3 289 44.3
CSS0016238 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.2e-49 201.8 111 82.9
Zm00001eb421280 Zea mays HOM05D004406 ORTHO05D005660 1.2e-49 201.8 208 49.5
CSS0034904 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.0e-49 201.1 111 82.9
CSS0034423 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.3e-48 198.4 111 81.1
Zm00001eb023770 Zea mays HOM05D003078 ORTHO05D003545 9.3e-47 192.2 199 49.2
TPR.G22508 Trifolium pratense HOM05D004406 ORTHO05D005660 4.0e-42 176.8 109 77.1
SHI18055 Sapria himalayana HOM05D004406 ORTHO05D005660 5.3e-42 176.4 203 50.2
CSS0028761 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 3.2e-39 167.2 111 72.1
Os06g0564800 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 1.2e-38 165.2 107 72.9
Zm00001eb180660 Zea mays HOM05D004406 ORTHO05D000467 8.7e-37 159.1 125 60.0
Actinidia18840 Actinidia chinensis HOM05D004406 ORTHO05D005660 7.6e-33 146.0 315 33.3
Zm00001eb005970 Zea mays HOM05D004406 ORTHO05D005660 3.2e-31 140.6 122 54.1
Zm00001eb049380 Zea mays HOM05D004406 ORTHO05D005660 3.2e-31 140.6 104 63.5
Zm00001eb307610 Zea mays HOM05D004406 ORTHO05D005660 3.5e-30 137.1 92 66.3
Actinidia18841 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.5e-28 131.7 67 94.0
Lj3g0015683 Lotus japonicus HOM05D004406 ORTHO05D036510 2.2e-24 117.9 67 80.6
Haze_08535 Corylus avellana HOM05D004406 ORTHO05D005660 3.5e-22 110.5 125 53.6
Hma1.2p1_0035F.1_g022190 Hydrangea macrophylla HOM05D004406 ORTHO05D005660 1.5e-12 78.6 59 66.1
C02p50710 Brassica napus HOM05D004406 ORTHO05D005660 2.8e-11 74.3 67 55.2
SEGI_01378 Sequoiadendron giganteum HOM05D000678 ORTHO05D001709 6.9e-10 69.7 39 84.6
DCAR_010031 Daucus carota HOM05D000781 ORTHO05D012367 1.9e-07 61.6 47 61.7
vmacro12020 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 3.2e-07 60.8 38 76.3
vmacro15157 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 7.2e-07 59.7 38 73.7
arahy.Tifrunner.gnm1.ann1.FEA8VP Arachis hypogaea HOM05D004603 ORTHO05D005244 2.1e-06 58.2 32 81.2
Gohir.D11G203250 Gossypium hirsutum HOM05D004406 ORTHO05D012367 6.1e-06 56.6 46 54.3


User provided reference genes

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