Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G0936 Cannabis sativa HOM05D000115 ORTHO05D043377 1.8e-131 472.6 243 100.0
CANSAT56G4126 Cannabis sativa HOM05D000115 ORTHO05D003511 1.8e-27 127.1 164 50.0
CANSAT56G1622 Cannabis sativa HOM05D000115 ORTHO05D003511 8.3e-20 101.7 94 58.5
Prupe.3G047600 Prunus persica HOM05D000115 ORTHO05D003511 1.8e-19 100.5 88 58.0
MD09G1191500 Malus domestica HOM05D000115 ORTHO05D003511 1.2e-18 97.8 94 57.4
QL05p010459 Quercus lobata HOM05D000115 ORTHO05D003511 1.7e-17 94.0 102 48.0
Ca_01214_v3 Cicer arietinum L. HOM05D000115 ORTHO05D003511 1.1e-16 91.3 79 58.2
MELO3C021657.2 Cucumis melo HOM05D000115 ORTHO05D003511 9.5e-16 88.2 112 50.0
CsaV3_5G026460 Cucumis sativus L. HOM05D000115 ORTHO05D003511 9.5e-16 88.2 112 50.0
CiPaw.02G139100 Carya illinoinensis HOM05D000115 ORTHO05D003511 1.2e-15 87.8 165 35.8
Sed0000024 Sechium edule HOM05D000115 ORTHO05D003511 1.2e-15 87.8 83 56.6
ClCG09G019990 Citrullus lanatus HOM05D000115 ORTHO05D003511 1.6e-15 87.4 83 56.6
Lj3g0016356 Lotus japonicus HOM05D000115 ORTHO05D003511 1.0e-14 84.7 103 46.6
arahy.Tifrunner.gnm1.ann1.G5TW2N Arachis hypogaea HOM05D000115 ORTHO05D003511 2.3e-14 83.6 119 42.0
Haze_15977 Corylus avellana HOM05D000115 ORTHO05D003511 3.1e-14 83.2 118 44.1
FAN02G0337 Fragaria x ananassa HOM05D000115 ORTHO05D003511 3.1e-14 83.2 88 53.4
Glyma.13G348300 Glycine max HOM05D000115 ORTHO05D003511 4.0e-14 82.8 119 41.2
VMungo1080G1576 Vigna mungo HOM05D000115 ORTHO05D003511 5.2e-14 82.4 105 42.9
arahy.Tifrunner.gnm1.ann1.FAWA0L Arachis hypogaea HOM05D000115 ORTHO05D003511 1.7e-12 77.4 75 52.0
Eucgr.F03141 Eucalyptus grandis HOM05D000115 ORTHO05D003511 2.2e-12 77.0 102 45.1
Psat5g291480 Pisum sativum HOM05D000115 ORTHO05D003511 7.8e-10 68.6 138 36.2
Cfa011149 Carpinus fangiana HOM05D000115 ORTHO05D043377 1.3e-09 67.8 63 52.4
RcHm_v2.0_Chr2g0143611 Rosa chinensis HOM05D000115 ORTHO05D003511 2.3e-09 67.0 128 35.9
FAN09G3652 Fragaria x ananassa HOM05D000115 ORTHO05D003511 3.0e-09 66.6 129 33.3
THA.LOC104814989 Tarenaya hassleriana HOM05D000115 ORTHO05D014770 6.6e-09 65.5 100 38.0
CARHR202390 Cardamine hirsuta HOM05D000115 ORTHO05D014770 1.5e-08 64.3 75 44.0
Aa31LG3G16220 Aethionema arabicum HOM05D000115 ORTHO05D014770 1.9e-08 63.9 75 41.3
FAN14G4475 Fragaria x ananassa HOM05D000115 ORTHO05D003511 1.9e-08 63.9 122 35.2
AL6G21460 Arabidopsis lyrata HOM05D000115 ORTHO05D014770 2.5e-08 63.5 101 36.6
FAN05G4063 Fragaria x ananassa HOM05D000115 ORTHO05D003511 2.5e-08 63.5 156 30.8
AT5G10900 Arabidopsis thaliana HOM05D000115 ORTHO05D014770 4.3e-08 62.8 75 40.0
BolC2t06433H Brassica oleracea HOM05D000115 ORTHO05D014770 5.6e-08 62.4 71 43.7
BcaC03g13339 Brassica carinata HOM05D000115 ORTHO05D014770 7.3e-08 62.0 71 43.7
BcaNung01902 Brassica carinata HOM05D000115 ORTHO05D006733 7.3e-08 62.0 71 43.7
A02p00740 Brassica napus HOM05D000115 ORTHO05D014770 9.5e-08 61.6 71 43.7
BraA02t05059Z Brassica rapa HOM05D000115 ORTHO05D014770 9.5e-08 61.6 71 43.7
Carub.0006s0939 Capsella rubella HOM05D000115 ORTHO05D014770 9.5e-08 61.6 75 40.0
Thhalv10012994m.g Eutrema salsugineum HOM05D000115 ORTHO05D014770 1.2e-07 61.2 71 40.8
C02p04740 Brassica napus HOM05D000115 ORTHO05D014770 2.8e-07 60.1 71 42.3
Sp6g32590 Schrenkiella parvula HOM05D000115 ORTHO05D014770 2.8e-07 60.1 71 39.4
Sabra01G0143300 Salix brachista HOM05D000115 ORTHO05D050563 6.2e-07 58.9 93 40.9
Potri.001G196600 Populus trichocarpa HOM05D000115 ORTHO05D050563 3.1e-06 56.6 117 35.0


User provided reference genes

Program Settings