Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G0895 Cannabis sativa HOM05D005921 ORTHO05D007374 7.0e-300 1033.1 496 100.0
Thecc.08G159700 Theobroma cacao HOM05D005921 ORTHO05D007374 1.6e-203 713.0 490 69.6
Cfa018279 Carpinus fangiana HOM05D005921 ORTHO05D007374 3.7e-200 701.8 452 73.7
GSVIVG01001409001 Vitis vinifera HOM05D005921 ORTHO05D007374 3.5e-198 695.3 492 68.9
MD05G1033700 Malus domestica HOM05D005921 ORTHO05D007374 2.5e-196 689.1 497 69.0
Duzib116G0900 Durio zibethinus HOM05D005921 ORTHO05D007374 8.8e-194 680.6 428 73.6
Atru.chr13.2001 Acer truncatum HOM05D005921 ORTHO05D007374 4.4e-193 678.3 449 70.6
CiPaw.15G012300 Carya illinoinensis HOM05D005921 ORTHO05D007374 2.8e-192 675.6 499 67.9
Prupe.8G040700 Prunus persica HOM05D005921 ORTHO05D007374 4.8e-192 674.9 486 68.3
RcHm_v2.0_Chr6g0274201 Rosa chinensis HOM05D005921 ORTHO05D007374 4.5e-190 668.3 497 67.2
ClCG08G007340 Citrullus lanatus HOM05D005921 ORTHO05D007374 1.0e-189 667.2 484 67.6
Gorai.009G286300 Gossypium raimondii HOM05D005921 ORTHO05D007374 1.0e-189 667.2 492 66.7
CsaV3_6G004990 Cucumis sativus L. HOM05D005921 ORTHO05D007374 1.3e-189 666.8 484 67.6
Gohir.A05G270866 Gossypium hirsutum HOM05D005921 ORTHO05D007374 6.5e-189 664.5 458 70.1
Ca_10662_v3 Cicer arietinum L. HOM05D005921 ORTHO05D007374 1.1e-188 663.7 486 65.4
Hma1.2p1_0358F.1_g134840 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 2.7e-187 659.1 498 63.7
Eucgr.F04188 Eucalyptus grandis HOM05D005921 ORTHO05D007374 4.7e-187 658.3 482 66.6
Glyma.10G221400 Glycine max HOM05D005921 ORTHO05D007374 6.1e-187 657.9 484 64.7
Lj5g0014499 Lotus japonicus HOM05D005921 ORTHO05D007374 3.0e-186 655.6 459 65.8
Medtr1g097955 Medicago truncatula HOM05D005921 ORTHO05D007374 3.0e-186 655.6 500 64.4
TPR.G17011 Trifolium pratense HOM05D005921 ORTHO05D007374 4.0e-186 655.2 477 65.6
Lalb_Chr06g0161731 Lupinus albus HOM05D005921 ORTHO05D007374 5.2e-186 654.8 445 68.5
Psat0s899g0040 Pisum sativum HOM05D005921 ORTHO05D007374 8.8e-186 654.1 486 63.8
COL.COLO4_13778 Corchorus olitorius HOM05D005921 ORTHO05D007374 1.5e-185 653.3 527 61.1
FAN24G0054 Fragaria x ananassa HOM05D005921 ORTHO05D007374 1.5e-185 653.3 497 65.6
Glyma.20G170200 Glycine max HOM05D005921 ORTHO05D007374 3.4e-185 652.1 501 62.3
Potri.005G197000 Populus trichocarpa HOM05D005921 ORTHO05D007374 5.7e-185 651.4 489 66.5
Manes.02G183400 Manihot esculenta HOM05D005921 ORTHO05D007374 7.5e-185 651.0 486 67.3
Lalb_Chr02g0141581 Lupinus albus HOM05D005921 ORTHO05D007374 1.3e-184 650.2 450 67.6
Rhsim11G0087800 Rhododendron simsii HOM05D005921 ORTHO05D007374 1.8e-183 646.4 494 65.0
TWI32G1095 Tripterygium wilfordii HOM05D005921 ORTHO05D007374 1.8e-183 646.4 498 63.9
arahy.Tifrunner.gnm1.ann1.9JVG50 Arachis hypogaea HOM05D005921 ORTHO05D007374 7.0e-183 644.4 472 64.6
FvH4_2g13020 Fragaria vesca HOM05D005921 ORTHO05D007374 1.2e-182 643.7 497 65.2
Sed0007537 Sechium edule HOM05D005921 ORTHO05D007374 1.3e-181 640.2 484 63.6
arahy.Tifrunner.gnm1.ann1.TV90AE Arachis hypogaea HOM05D005921 ORTHO05D007374 3.8e-181 638.6 453 66.4
AL2G31250 Arabidopsis lyrata HOM05D005921 ORTHO05D007374 8.6e-181 637.5 478 63.2
Ciclev10003457m.g Citrus clementina HOM05D005921 ORTHO05D007374 1.9e-180 636.3 439 68.6
TAR381G0629 Trochodendron aralioides HOM05D005921 ORTHO05D007374 2.8e-179 632.5 498 64.1
AT1G71696 Arabidopsis thaliana HOM05D005921 ORTHO05D007374 8.0e-179 630.9 478 63.0
FAN27G2380 Fragaria x ananassa HOM05D005921 ORTHO05D007374 2.3e-178 629.4 518 62.5
Cc10_g15280 Coffea canephora HOM05D005921 ORTHO05D007374 3.0e-178 629.0 503 62.0
vmacro01494 Vaccinium macrocarpon HOM05D005921 ORTHO05D007374 3.0e-178 629.0 457 66.1
PGR044G0568 Punica granatum HOM05D005921 ORTHO05D007374 4.0e-178 628.6 482 62.7
VMungo0720G0456 Vigna mungo HOM05D005921 ORTHO05D007374 4.0e-178 628.6 502 61.4
CSS0006668 Camellia sinensis var. sinensis HOM05D005921 ORTHO05D007374 6.8e-178 627.9 445 67.2
Sp5g26720 Schrenkiella parvula HOM05D005921 ORTHO05D007374 6.8e-178 627.9 473 63.6
Eucgr.L02800 Eucalyptus grandis HOM05D005921 ORTHO05D007374 1.2e-177 627.1 530 61.1
CAN.G1252.3 Capsicum annuum HOM05D005921 ORTHO05D007374 3.4e-177 625.5 492 61.0
Aa31LG4G8950 Aethionema arabicum HOM05D005921 ORTHO05D007374 1.3e-176 623.6 477 61.6
Sopen04g027990 Solanum pennellii HOM05D005921 ORTHO05D007374 1.3e-176 623.6 488 62.1
Carub.0002s1845 Capsella rubella HOM05D005921 ORTHO05D007374 1.4e-175 620.2 472 62.3
MBI01_g34168_MAGBIO Magnolia biondii HOM05D005921 ORTHO05D007374 3.2e-175 619.0 492 61.0
EL10Ac1g01606 Beta vulgaris HOM05D005921 ORTHO05D007374 4.1e-175 618.6 496 60.1
Gohir.D05G273101 Gossypium hirsutum HOM05D005921 ORTHO05D007374 4.1e-175 618.6 489 63.0
Solyc04g072010.3 Solanum lycopersicum HOM05D005921 ORTHO05D007374 7.0e-175 617.8 488 61.5
BcaB05g24658 Brassica carinata HOM05D005921 ORTHO05D007374 2.0e-174 616.3 481 62.4
BcaC03g15284 Brassica carinata HOM05D005921 ORTHO05D007374 7.8e-174 614.4 481 62.8
A02p17260 Brassica napus HOM05D005921 ORTHO05D007374 1.7e-173 613.2 481 62.4
Thhalv10018610m.g Eutrema salsugineum HOM05D005921 ORTHO05D007374 6.6e-173 611.3 418 67.9
Aqoxy6G00427 Aquilegia oxysepala HOM05D005921 ORTHO05D007374 1.5e-172 610.1 487 60.8
C02p28900 Brassica napus HOM05D005921 ORTHO05D007374 1.6e-171 606.7 497 61.0
CDE04G2034 Ceratophyllum demersum HOM05D005921 ORTHO05D007374 1.4e-170 603.6 460 61.5
HanXRQChr02g0042431 Helianthus annuus HOM05D005921 ORTHO05D007374 5.8e-169 598.2 485 60.0
FAN15G3525 Fragaria x ananassa HOM05D005921 ORTHO05D007374 7.5e-169 597.8 521 59.9
Migut.N02950 Erythranthe guttata HOM05D005921 ORTHO05D007374 1.7e-168 596.7 498 59.8
Sc02g0003820 Simmondsia chinensis HOM05D005921 ORTHO05D007374 2.9e-168 595.9 449 65.7
Peaxi162Scf00360g00056 Petunia axillaris HOM05D005921 ORTHO05D007374 3.2e-167 592.4 466 61.8
MELO3C019977.2 Cucumis melo HOM05D005921 ORTHO05D007374 1.2e-166 590.5 389 71.2
PSO675G2388 Papaver somniferum HOM05D005921 ORTHO05D007374 3.0e-165 585.9 495 58.0
Lsat_1_v5_gn_1_5181 Lactuca sativa HOM05D005921 ORTHO05D007374 6.6e-165 584.7 489 57.7
Phvul.007G083600 Phaseolus vulgaris HOM05D005921 ORTHO05D007374 8.6e-165 584.3 405 66.4
Hund26678 Selenicereus undatus HOM05D005921 ORTHO05D007374 2.5e-164 582.8 527 55.8
CARHR291100 Cardamine hirsuta HOM05D005921 ORTHO05D007374 4.3e-164 582.0 396 67.9
MSTRG.24492 Avicennia marina HOM05D005921 ORTHO05D007374 9.5e-164 580.9 504 59.1
MSTRG.22109 Avicennia marina HOM05D005921 ORTHO05D007374 1.0e-157 560.8 476 57.8
unitig_578.g16229 Utricularia gibba HOM05D005921 ORTHO05D007374 3.0e-157 559.3 419 63.2
Nn5g28835 Nelumbo nucifera HOM05D005921 ORTHO05D007374 6.6e-157 558.1 484 57.2
Ah.05g168190 Amaranthus hybridus HOM05D005921 ORTHO05D007374 1.1e-156 557.4 405 64.7
Lj4A704G63 Lonicera japonica HOM05D005921 ORTHO05D007374 2.5e-156 556.2 399 66.9
Lj7A383T42 Lonicera japonica HOM05D005921 ORTHO05D007374 1.6e-155 553.5 436 63.1
FAN20G2564 Fragaria x ananassa HOM05D005921 ORTHO05D007374 8.1e-155 551.2 521 57.0
ECA247G3881 Erigeron canadensis HOM05D005921 ORTHO05D007374 1.1e-154 550.8 378 67.7
SalBow6G1744 Salvia bowleyana HOM05D005921 ORTHO05D007374 3.1e-154 549.3 507 54.0
Zm00001eb377250 Zea mays HOM05D005921 ORTHO05D007374 4.0e-154 548.9 473 56.7
Sabra05G0149900 Salix brachista HOM05D005921 ORTHO05D007374 5.4e-151 538.5 446 61.0
AUR62034891 Chenopodium quinoa HOM05D005921 ORTHO05D007374 1.2e-150 537.3 448 58.5
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 1.9e-148 530.0 423 61.2
Hma1.2p1_0358F.1_g134830 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 1.2e-142 510.8 349 70.5
AUR62026635 Chenopodium quinoa HOM05D005921 ORTHO05D007374 6.2e-139 498.4 393 59.8
SGA_v2.0_scaffold54G19682 Striga asiatica HOM05D005921 ORTHO05D007374 9.0e-138 494.6 456 55.7
Nitab4.5_0013157g0020 Nicotiana tabacum HOM05D005921 ORTHO05D007374 6.7e-133 478.4 360 64.2
DCAR_001188 Daucus carota HOM05D005921 ORTHO05D007374 1.3e-131 474.2 300 70.7
Nitab4.5_0000099g0240 Nicotiana tabacum HOM05D005921 ORTHO05D007374 1.3e-131 474.2 534 49.1
Cpa.g.sc26.80 Carica papaya HOM05D005921 ORTHO05D007374 9.0e-130 468.0 329 67.2
Mapoly0096s0032 Marchantia polymorpha HOM05D005921 ORTHO05D007374 8.7e-125 451.4 369 58.0
SMO116G0063 Selaginella moellendorffii HOM05D005921 ORTHO05D007374 1.1e-124 451.1 358 59.5
AagrBONN_evm.TU.Sc2ySwM_344.3190 Anthoceros agrestis HOM05D005921 ORTHO05D007374 9.0e-122 441.4 359 56.3
Ciclev10003529m.g Citrus clementina HOM05D005921 ORTHO05D007374 6.0e-118 428.7 380 60.0
Pp3c16_14030 Physcomitrium patens HOM05D005921 ORTHO05D007374 4.8e-115 419.1 330 57.0
HPP92_000681 Vanilla planifolia HOM05D005921 ORTHO05D007374 4.1e-114 416.0 352 57.7
Haze_17806 Corylus avellana HOM05D005921 ORTHO05D007374 1.3e-107 394.4 285 68.4
QL02p037446 Quercus lobata HOM05D005921 ORTHO05D007374 1.8e-98 364.0 244 70.5
QL02p037946 Quercus lobata HOM05D005921 ORTHO05D007374 1.8e-98 364.0 244 70.5
QL02p037958 Quercus lobata HOM05D005921 ORTHO05D007374 9.1e-98 361.7 249 72.7
QL02p037460 Quercus lobata HOM05D005921 ORTHO05D007374 4.5e-97 359.4 249 72.3
CBR_g30849 Chara braunii HOM05D005921 ORTHO05D007374 1.3e-88 331.3 337 46.3
Pp3c6_12100 Physcomitrium patens HOM05D005921 ORTHO05D007374 5.0e-88 329.3 370 46.8
SHI09099 Sapria himalayana HOM05D005921 ORTHO05D007374 1.6e-86 324.3 296 54.4
BolC2t08937H Brassica oleracea HOM05D005921 ORTHO05D007374 8.8e-85 318.5 239 66.1
BraA02t06774Z Brassica rapa HOM05D005921 ORTHO05D007374 3.3e-84 316.6 239 65.3
HPP92_000638 Vanilla planifolia HOM05D005921 ORTHO05D007374 4.4e-84 316.2 325 49.5
Oeu017621.1 Olea europaea HOM05D005921 ORTHO05D007374 3.6e-78 296.6 179 74.3
MCO15G195 Micromonas commoda HOM05D005921 ORTHO05D007374 1.7e-67 261.2 375 37.1
BolC2t08936H Brassica oleracea HOM05D005921 ORTHO05D007374 7.8e-65 252.3 233 54.9
BraA02t06773Z Brassica rapa HOM05D005921 ORTHO05D007374 2.3e-64 250.8 226 55.8
PRCOL_00005633 Prasinoderma coloniale HOM05D005921 ORTHO05D007374 1.9e-63 247.7 311 41.8
Os06g0144600 Oryza sativa ssp. japonica HOM05D005921 ORTHO05D007374 1.4e-58 231.5 189 63.5
Zm00001eb035610 Zea mays HOM05D005921 ORTHO05D007374 1.5e-55 221.5 147 70.7
SEGI_33860 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 1.6e-49 201.4 181 54.7
SEGI_16149 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 7.3e-39 166.0 97 72.2
Zm00001eb246880 Zea mays HOM05D005921 ORTHO05D007374 7.3e-39 166.0 108 73.1
Cre07.g335900 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 1.2e-38 165.2 338 34.9
MD10G1034600 Malus domestica HOM05D005921 ORTHO05D007374 6.6e-32 142.9 142 50.7
Cre06.g309450 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 8.1e-30 136.0 371 30.5
SHI09097 Sapria himalayana HOM05D005921 ORTHO05D007374 8.1e-30 136.0 74 81.1
Duzib093G1718 Durio zibethinus HOM05D005921 ORTHO05D007374 2.6e-28 131.0 73 76.7
Pp3c27_7150 Physcomitrium patens HOM05D005921 ORTHO05D007374 2.4e-18 97.8 367 25.3
Zm00001eb035620 Zea mays HOM05D005921 ORTHO05D007374 7.1e-18 96.3 56 69.6
Prupe.8G040900 Prunus persica HOM05D005921 ORTHO05D007374 9.6e-15 85.9 101 47.5
Sabra02G0051300 Salix brachista HOM05D005921 ORTHO05D007374 4.8e-14 83.6 113 46.0


User provided reference genes

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