Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G0856 Cannabis sativa HOM05D005667 ORTHO05D007299 3.7e-232 807.7 387 100.0
QL12p027280 Quercus lobata HOM05D005667 ORTHO05D007299 9.3e-183 643.7 395 76.2
Cfa005935 Carpinus fangiana HOM05D005667 ORTHO05D007299 7.4e-180 634.0 389 76.3
MD03G1286100 Malus domestica HOM05D005667 ORTHO05D007299 1.1e-175 620.2 387 74.4
MD11G1306000 Malus domestica HOM05D005667 ORTHO05D007299 1.2e-174 616.7 387 74.9
Haze_04910 Corylus avellana HOM05D005667 ORTHO05D007299 2.7e-174 615.5 420 70.7
TAR365G0445 Trochodendron aralioides HOM05D005667 ORTHO05D007299 4.3e-172 608.2 387 73.6
TAR627G0762 Trochodendron aralioides HOM05D005667 ORTHO05D007299 2.2e-171 605.9 387 73.4
QL12p026655 Quercus lobata HOM05D005667 ORTHO05D007299 4.1e-170 601.7 395 72.4
Atru.chr5.1169 Acer truncatum HOM05D005667 ORTHO05D007299 6.9e-170 600.9 386 73.6
Glyma.03G213700 Glycine max HOM05D005667 ORTHO05D007299 9.1e-170 600.5 387 70.0
Glyma.19G210500 Glycine max HOM05D005667 ORTHO05D007299 1.2e-169 600.1 387 70.5
Psat3g021960 Pisum sativum HOM05D005667 ORTHO05D007299 4.5e-169 598.2 392 69.4
Ca_09151_v3 Cicer arietinum L. HOM05D005667 ORTHO05D007299 1.0e-168 597.0 391 69.8
Dinv33042 Davidia involucrata HOM05D005667 ORTHO05D007299 1.0e-168 597.0 388 71.9
VMungo1383G3519 Vigna mungo HOM05D005667 ORTHO05D007299 3.8e-168 595.1 385 70.1
Phvul.001G206300 Phaseolus vulgaris HOM05D005667 ORTHO05D007299 5.0e-168 594.7 385 70.4
Lj1g0013419 Lotus japonicus HOM05D005667 ORTHO05D007299 1.4e-167 593.2 390 70.0
arahy.Tifrunner.gnm1.ann1.P0XQ2X Arachis hypogaea HOM05D005667 ORTHO05D007299 5.5e-167 591.3 392 70.2
CiPaw.07G107100 Carya illinoinensis HOM05D005667 ORTHO05D007299 5.5e-167 591.3 389 71.7
TPR.G9636 Trifolium pratense HOM05D005667 ORTHO05D007299 3.6e-166 588.6 388 70.1
FvH4_2g25530 Fragaria vesca HOM05D005667 ORTHO05D007299 4.7e-166 588.2 392 71.9
MELO3C017966.2 Cucumis melo HOM05D005667 ORTHO05D007299 1.0e-165 587.0 392 69.6
Nn4g25820 Nelumbo nucifera HOM05D005667 ORTHO05D007299 1.8e-165 586.3 383 71.3
arahy.Tifrunner.gnm1.ann1.AQSE8X Arachis hypogaea HOM05D005667 ORTHO05D007299 3.0e-165 585.5 392 70.2
Actinidia32226 Actinidia chinensis HOM05D005667 ORTHO05D007299 2.0e-164 582.8 388 69.8
Lalb_Chr18g0047071 Lupinus albus HOM05D005667 ORTHO05D007299 2.6e-164 582.4 391 69.6
Lalb_Chr04g0259821 Lupinus albus HOM05D005667 ORTHO05D007299 9.7e-164 580.5 385 70.9
CsaV3_4G000700 Cucumis sativus L. HOM05D005667 ORTHO05D007299 3.7e-163 578.6 392 68.6
Sed0014922 Sechium edule HOM05D005667 ORTHO05D007299 4.8e-163 578.2 393 68.7
Medtr7g108870 Medicago truncatula HOM05D005667 ORTHO05D007299 1.8e-162 576.2 384 69.8
Medtr8g058590 Medicago truncatula HOM05D005667 ORTHO05D007299 1.8e-162 576.2 384 69.8
TWI23G0451 Tripterygium wilfordii HOM05D005667 ORTHO05D007299 1.2e-161 573.5 383 71.3
vmacro14998 Vaccinium macrocarpon HOM05D005667 ORTHO05D007299 2.6e-161 572.4 392 70.4
Sc05g0004030 Simmondsia chinensis HOM05D005667 ORTHO05D007299 6.5e-160 567.8 392 67.9
Hund18138 Selenicereus undatus HOM05D005667 ORTHO05D007299 1.9e-159 566.2 392 68.1
TWI59G1070 Tripterygium wilfordii HOM05D005667 ORTHO05D007299 2.5e-159 565.8 387 70.5
Ciclev10020175m.g Citrus clementina HOM05D005667 ORTHO05D007299 4.7e-158 561.6 443 62.8
FAN20G0834 Fragaria x ananassa HOM05D005667 ORTHO05D007299 1.8e-157 559.7 392 68.9
Nitab4.5_0002469g0040 Nicotiana tabacum HOM05D005667 ORTHO05D007299 1.1e-156 557.0 388 68.6
Thecc.01G298400 Theobroma cacao HOM05D005667 ORTHO05D007299 4.4e-156 555.1 389 68.6
Solyc09g075000.3 Solanum lycopersicum HOM05D005667 ORTHO05D007299 5.7e-156 554.7 387 68.0
Hma1.2p1_0209F.1_g088490 Hydrangea macrophylla HOM05D005667 ORTHO05D007299 1.3e-155 553.5 389 67.4
DCAR_005798 Daucus carota HOM05D005667 ORTHO05D007299 1.7e-155 553.1 388 67.5
HanXRQChr04g0118041 Helianthus annuus HOM05D005667 ORTHO05D007299 6.3e-155 551.2 390 67.2
PGSC0003DMG400011397 Solanum tuberosum HOM05D005667 ORTHO05D007299 1.1e-154 550.4 387 68.5
Sopen09g029820 Solanum pennellii HOM05D005667 ORTHO05D007299 2.4e-154 549.3 371 69.5
Prupe.8G259400 Prunus persica HOM05D005667 ORTHO05D007299 3.5e-153 545.4 341 74.8
Duzib138G1280 Durio zibethinus HOM05D005667 ORTHO05D007299 4.5e-153 545.0 387 68.2
COL.COLO4_23365 Corchorus olitorius HOM05D005667 ORTHO05D007299 5.9e-153 544.7 389 68.1
Sabra02G0153700 Salix brachista HOM05D005667 ORTHO05D007299 2.9e-152 542.3 416 65.4
Ah.08g213150 Amaranthus hybridus HOM05D005667 ORTHO05D007299 5.0e-152 541.6 395 64.3
SGA_v2.0_scaffold2G01401 Striga asiatica HOM05D005667 ORTHO05D007299 1.9e-151 539.7 379 66.5
GSVIVG01027987001 Vitis vinifera HOM05D005667 ORTHO05D007299 1.6e-150 536.6 335 75.2
AT2G47790 Arabidopsis thaliana HOM05D005667 ORTHO05D007299 1.0e-149 533.9 393 64.6
CSS0019258 Camellia sinensis var. sinensis HOM05D005667 ORTHO05D007299 1.8e-149 533.1 388 66.5
MSTRG.21625 Avicennia marina HOM05D005667 ORTHO05D007299 3.0e-149 532.3 385 66.8
THA.LOC104817511 Tarenaya hassleriana HOM05D005667 ORTHO05D007299 4.0e-149 531.9 368 67.4
Eucgr.K03468 Eucalyptus grandis HOM05D005667 ORTHO05D007299 8.8e-149 530.8 377 67.4
AL4G47370 Arabidopsis lyrata HOM05D005667 ORTHO05D007299 4.4e-148 528.5 385 64.4
Potri.002G205600 Populus trichocarpa HOM05D005667 ORTHO05D007299 4.4e-148 528.5 389 67.4
Manes.01G217700 Manihot esculenta HOM05D005667 ORTHO05D007299 8.2e-147 524.2 386 66.1
CDE08G0318 Ceratophyllum demersum HOM05D005667 ORTHO05D007299 2.4e-146 522.7 382 63.6
Nitab4.5_0005515g0060 Nicotiana tabacum HOM05D005667 ORTHO05D007299 5.3e-146 521.5 388 66.0
Sp4g29720 Schrenkiella parvula HOM05D005667 ORTHO05D007299 5.3e-146 521.5 394 63.7
Aqoxy2G02973 Aquilegia oxysepala HOM05D005667 ORTHO05D007299 1.6e-145 520.0 375 65.6
ClCG10G010830 Citrullus lanatus HOM05D005667 ORTHO05D007299 3.5e-145 518.8 392 63.8
Lsat_1_v5_gn_8_53441 Lactuca sativa HOM05D005667 ORTHO05D007299 5.9e-145 518.1 401 63.3
Carub.0004s3050 Capsella rubella HOM05D005667 ORTHO05D007299 3.8e-144 515.4 389 63.0
Cc01_g20730 Coffea canephora HOM05D005667 ORTHO05D007299 1.9e-143 513.1 443 56.9
PSO210G4429 Papaver somniferum HOM05D005667 ORTHO05D007299 8.0e-142 507.7 391 63.9
Migut.D00204 Erythranthe guttata HOM05D005667 ORTHO05D007299 1.0e-141 507.3 390 63.3
ATR0796G332 Amborella trichopoda HOM05D005667 ORTHO05D007299 4.0e-141 505.4 380 62.9
Potri.014G130600 Populus trichocarpa HOM05D005667 ORTHO05D007299 1.2e-140 503.8 384 64.1
Peaxi162Scf00001g00492 Petunia axillaris HOM05D005667 ORTHO05D007299 1.7e-139 500.0 375 64.3
CARHR143160 Cardamine hirsuta HOM05D005667 ORTHO05D007299 3.7e-139 498.8 394 61.7
AUR62008656 Chenopodium quinoa HOM05D005667 ORTHO05D007299 6.3e-139 498.0 390 60.5
Lj1C26T7 Lonicera japonica HOM05D005667 ORTHO05D007299 3.1e-138 495.7 322 72.0
SalBow3G0511 Salvia bowleyana HOM05D005667 ORTHO05D007299 9.1e-138 494.2 371 62.5
Aa31LG1G29130 Aethionema arabicum HOM05D005667 ORTHO05D007299 1.2e-137 493.8 398 61.1
Thhalv10001494m.g Eutrema salsugineum HOM05D005667 ORTHO05D007299 1.6e-137 493.4 390 62.3
AUR62033112 Chenopodium quinoa HOM05D005667 ORTHO05D007299 2.0e-137 493.0 391 60.1
PSO170G6061 Papaver somniferum HOM05D005667 ORTHO05D007299 2.7e-137 492.7 374 63.9
Gohir.D12G135100 Gossypium hirsutum HOM05D005667 ORTHO05D007299 1.5e-135 486.9 389 61.2
Sabra14G0097200 Salix brachista HOM05D005667 ORTHO05D007299 7.2e-135 484.6 386 61.4
EL10Ac7g17451 Beta vulgaris HOM05D005667 ORTHO05D007299 6.1e-134 481.5 388 58.2
PGR044G1684 Punica granatum HOM05D005667 ORTHO05D007299 8.0e-134 481.1 395 60.3
HPP92_027132 Vanilla planifolia HOM05D005667 ORTHO05D007299 4.0e-133 478.8 367 60.5
CSS0024566 Camellia sinensis var. sinensis HOM05D005667 ORTHO05D007299 1.2e-132 477.2 383 61.6
CSS0050073 Camellia sinensis var. sinensis HOM05D005667 ORTHO05D007299 4.4e-132 475.3 383 61.4
Gohir.A12G131200 Gossypium hirsutum HOM05D005667 ORTHO05D007299 1.3e-131 473.8 389 59.6
Rhsim01G0284200 Rhododendron simsii HOM05D005667 ORTHO05D007299 1.7e-131 473.4 389 61.4
Gorai.008G146100 Gossypium raimondii HOM05D005667 ORTHO05D007299 3.7e-131 472.2 389 60.4
SHI15190 Sapria himalayana HOM05D005667 ORTHO05D007299 1.8e-130 469.9 403 60.5
BcaB06g29498 Brassica carinata HOM05D005667 ORTHO05D007299 3.5e-129 465.7 408 56.4
Actinidia24829 Actinidia chinensis HOM05D005667 ORTHO05D007299 1.5e-127 460.3 388 58.5
Hma1.2p1_0209F.1_g088500 Hydrangea macrophylla HOM05D005667 ORTHO05D007299 1.9e-127 459.9 427 54.3
BolC4t28779H Brassica oleracea HOM05D005667 ORTHO05D007299 4.7e-126 455.3 387 58.7
A04p35070 Brassica napus HOM05D005667 ORTHO05D007299 4.0e-125 452.2 384 58.3
C04p72980 Brassica napus HOM05D005667 ORTHO05D007299 5.2e-125 451.8 388 58.0
BraA04t18943Z Brassica rapa HOM05D005667 ORTHO05D007299 2.6e-124 449.5 385 58.4
unitig_0.g1174 Utricularia gibba HOM05D005667 ORTHO05D007299 2.6e-124 449.5 420 54.5
Sc05g0001380 Simmondsia chinensis HOM05D005667 ORTHO05D007299 1.7e-123 446.8 303 68.0
BcaC02g06992 Brassica carinata HOM05D005667 ORTHO05D007299 4.9e-123 445.3 386 57.0
SEGI_23788 Sequoiadendron giganteum HOM05D005667 ORTHO05D007299 8.6e-120 434.5 380 55.3
ECA236G1571 Erigeron canadensis HOM05D005667 ORTHO05D007299 1.1e-119 434.1 340 61.2
Dinv19706 Davidia involucrata HOM05D005667 ORTHO05D007299 2.6e-108 396.4 266 71.8
Cpa.g.sc9.222 Carica papaya HOM05D005667 ORTHO05D007299 3.5e-105 386.0 272 69.5
Medtr8g058557 Medicago truncatula HOM05D005667 ORTHO05D007299 5.6e-103 378.6 232 76.3
Pp3c2_26100 Physcomitrium patens HOM05D005667 ORTHO05D007299 2.4e-90 336.7 385 46.5
Pp3c11_14960 Physcomitrium patens HOM05D005667 ORTHO05D007299 2.5e-87 326.6 384 44.5
Mapoly0153s0027 Marchantia polymorpha HOM05D005667 ORTHO05D007299 4.0e-85 319.3 377 43.2
BcaB06g29495 Brassica carinata HOM05D005667 ORTHO05D007299 4.5e-84 315.8 278 54.7
SMO329G0065 Selaginella moellendorffii HOM05D005667 ORTHO05D007299 1.6e-81 307.4 348 46.8
HPP92_021590 Vanilla planifolia HOM05D005667 ORTHO05D007299 1.8e-80 303.9 265 55.8
RcHm_v2.0_Chr6g0293741 Rosa chinensis HOM05D005667 ORTHO05D007299 4.0e-77 292.7 200 68.0
Pp3c11_15090 Physcomitrium patens HOM05D005667 ORTHO05D007299 7.4e-71 271.9 298 45.3
Nn3g21456 Nelumbo nucifera HOM05D005667 ORTHO05D007299 6.9e-69 265.4 314 47.5
Zm00001eb157470 Zea mays HOM05D005667 ORTHO05D007299 9.0e-69 265.0 205 59.0
Oeu011452.2 Olea europaea HOM05D005667 ORTHO05D007299 8.7e-64 248.4 156 75.0
AagrBONN_evm.TU.Sc2ySwM_344.2785 Anthoceros agrestis HOM05D005667 ORTHO05D007299 1.6e-62 244.2 255 47.1
Cre03.g178050 Chlamydomonas reinhardtii HOM05D005667 ORTHO05D007299 5.1e-56 222.6 358 38.3
Actinidia21054 Actinidia chinensis HOM05D005667 ORTHO05D007299 8.2e-54 215.3 152 61.8
Os12g0294100 Oryza sativa ssp. japonica HOM05D005667 ORTHO05D007299 7.7e-52 208.8 190 55.8
RcHm_v2.0_Chr6g0293751 Rosa chinensis HOM05D005667 ORTHO05D007299 1.1e-42 178.3 139 66.2
BcaC02g06993 Brassica carinata HOM05D005667 ORTHO05D007299 4.1e-37 159.8 121 65.3
MCO09G319 Micromonas commoda HOM05D005667 ORTHO05D007299 2.5e-34 150.6 345 33.3
PRCOL_00003266 Prasinoderma coloniale HOM05D005667 ORTHO05D007299 3.6e-33 146.7 335 30.4
CBR_g34279 Chara braunii HOM05D005667 ORTHO05D007299 7.7e-28 129.0 163 41.7
Migut.D00125 Erythranthe guttata HOM05D005667 ORTHO05D007299 7.7e-28 129.0 177 42.9
Migut.G00109 Erythranthe guttata HOM05D005667 ORTHO05D007299 8.6e-19 99.0 171 36.3
CBR_g31107 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-14 84.3 150 34.7
CBR_g31109 Chara braunii HOM05D000019 ORTHO05D000048 5.9e-12 76.3 69 46.4
Prupe.8G259600 Prunus persica HOM05D005667 ORTHO05D007299 1.3e-11 75.1 43 83.7
Actinidia13473 Actinidia chinensis HOM05D005667 ORTHO05D000474 1.0e-08 65.5 68 51.5
Rhsim04G0118100 Rhododendron simsii HOM05D000215 ORTHO05D026101 4.9e-06 56.6 58 51.7


User provided reference genes

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