Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G0852 Cannabis sativa HOM05D004157 ORTHO05D004860 1.1e-145 520.0 266 100.0
Prupe.8G159400 Prunus persica HOM05D004157 ORTHO05D004860 7.5e-123 444.1 266 83.8
Thecc.02G068100 Theobroma cacao HOM05D004157 ORTHO05D004860 6.3e-122 441.0 266 83.5
MD10G1116600 Malus domestica HOM05D004157 ORTHO05D004860 8.2e-122 440.7 266 84.6
QL11p047455 Quercus lobata HOM05D004157 ORTHO05D004860 2.4e-121 439.1 265 83.4
GSVIVG01024109001 Vitis vinifera HOM05D004157 ORTHO05D004860 1.7e-119 433.0 266 79.7
Gohir.A03G202800 Gossypium hirsutum HOM05D004157 ORTHO05D004860 2.5e-118 429.1 266 81.6
PGR042G1356 Punica granatum HOM05D004157 ORTHO05D004860 2.5e-118 429.1 266 82.0
PGR142G1140 Punica granatum HOM05D004157 ORTHO05D004860 5.5e-118 427.9 264 80.3
Gorai.005G251900 Gossypium raimondii HOM05D004157 ORTHO05D004860 9.4e-118 427.2 266 81.2
TWI79G0156 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 4.7e-117 424.9 266 80.8
COL.COLO4_17245 Corchorus olitorius HOM05D004157 ORTHO05D004860 6.1e-117 424.5 303 73.9
FAN24G0875 Fragaria x ananassa HOM05D004157 ORTHO05D004860 1.0e-116 423.7 266 80.5
Gohir.D02G224100 Gossypium hirsutum HOM05D004157 ORTHO05D004860 1.0e-116 423.7 266 80.8
TAR381G0601 Trochodendron aralioides HOM05D004157 ORTHO05D004860 1.0e-116 423.7 267 79.8
FvH4_2g02150 Fragaria vesca HOM05D004157 ORTHO05D004860 3.0e-116 422.2 266 80.1
Potri.004G167200 Populus trichocarpa HOM05D004157 ORTHO05D004860 3.0e-116 422.2 267 82.0
Hma1.2p1_1385F.1_g279670 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 8.8e-116 420.6 266 80.5
Aqoxy5G01458 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 1.5e-115 419.9 266 78.6
RcHm_v2.0_Chr6g0245651 Rosa chinensis HOM05D004157 ORTHO05D004860 1.5e-115 419.9 266 80.8
Cfa005173 Carpinus fangiana HOM05D004157 ORTHO05D004860 2.0e-115 419.5 266 81.2
TWI75G1232 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 2.0e-115 419.5 266 80.1
FAN20G1131 Fragaria x ananassa HOM05D004157 ORTHO05D004860 7.5e-115 417.5 266 79.7
Eucgr.G01748 Eucalyptus grandis HOM05D004157 ORTHO05D004860 2.8e-114 415.6 266 80.1
Sabra09G0098500 Salix brachista HOM05D004157 ORTHO05D004860 3.7e-114 415.2 267 80.5
PSO675G3214 Papaver somniferum HOM05D004157 ORTHO05D004860 4.1e-113 411.8 267 77.2
Actinidia32087 Actinidia chinensis HOM05D004157 ORTHO05D004860 2.0e-112 409.5 266 78.6
CiPaw.06G125600 Carya illinoinensis HOM05D000447 ORTHO05D000315 2.0e-112 409.5 252 81.7
PSO541G4423 Papaver somniferum HOM05D004157 ORTHO05D004860 7.7e-112 407.5 267 76.0
EL10Ac9g21458 Beta vulgaris HOM05D004157 ORTHO05D004860 1.0e-111 407.1 266 76.3
Nn5g30153 Nelumbo nucifera HOM05D004157 ORTHO05D004860 1.7e-111 406.4 268 76.5
Cc02_g16620 Coffea canephora HOM05D004157 ORTHO05D004860 2.2e-111 406.0 265 77.7
vmacro22690 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 4.2e-110 401.7 255 78.4
Solyc01g111060.4 Solanum lycopersicum HOM05D004157 ORTHO05D004860 1.2e-109 400.2 267 76.8
Sopen01g053120 Solanum pennellii HOM05D004157 ORTHO05D004860 1.6e-109 399.8 267 76.4
Sc18g0006720 Simmondsia chinensis HOM05D004157 ORTHO05D004860 2.8e-109 399.1 266 75.9
PGSC0003DMG400001636 Solanum tuberosum HOM05D004157 ORTHO05D004860 4.7e-109 398.3 267 76.4
Atru.chr5.3210 Acer truncatum HOM05D004157 ORTHO05D004860 1.0e-108 397.1 266 74.8
Migut.I00211 Erythranthe guttata HOM05D004157 ORTHO05D004860 1.0e-108 397.1 264 76.1
Phvul.009G000600 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 1.4e-108 396.7 268 75.4
ECA234G4736 Erigeron canadensis HOM05D004157 ORTHO05D004860 1.8e-108 396.4 266 74.1
TPR.G38481 Trifolium pratense HOM05D004157 ORTHO05D004860 5.2e-108 394.8 258 77.5
HPP92_002547 Vanilla planifolia HOM05D004157 ORTHO05D004860 6.8e-108 394.4 254 77.6
Eucgr.G01749 Eucalyptus grandis HOM05D004157 ORTHO05D004860 8.8e-108 394.0 268 78.0
Glyma.04G005900 Glycine max HOM05D004157 ORTHO05D004860 8.8e-108 394.0 266 74.4
Psat5g003520 Pisum sativum HOM05D004157 ORTHO05D004860 1.5e-107 393.3 246 78.5
Glyma.06G005600 Glycine max HOM05D004157 ORTHO05D004860 3.4e-107 392.1 267 73.8
Ah.01g009470 Amaranthus hybridus HOM05D004157 ORTHO05D004860 4.4e-107 391.7 286 70.6
CsaV3_7G000760 Cucumis sativus L. HOM05D004157 ORTHO05D004860 1.3e-106 390.2 244 80.7
MELO3C013382.2 Cucumis melo HOM05D004157 ORTHO05D004860 1.7e-106 389.8 244 80.3
Lj1g0011325 Lotus japonicus HOM05D004157 ORTHO05D004860 2.2e-106 389.4 255 75.7
Manes.04G078800 Manihot esculenta HOM05D004157 ORTHO05D004860 3.7e-106 388.7 229 83.0
Lsat_1_v5_gn_3_45521 Lactuca sativa HOM05D004157 ORTHO05D004860 4.9e-106 388.3 269 72.9
Peaxi162Scf00362g01054 Petunia axillaris HOM05D004157 ORTHO05D004860 6.3e-106 387.9 265 75.5
Medtr3g117700 Medicago truncatula HOM05D004157 ORTHO05D004860 1.8e-105 386.3 250 76.0
Lalb_Chr11g0061251 Lupinus albus HOM05D004157 ORTHO05D004860 2.4e-105 386.0 253 75.9
PSO675G5417 Papaver somniferum HOM05D004157 ORTHO05D004860 2.4e-105 386.0 264 72.3
Sed0001494 Sechium edule HOM05D000447 ORTHO05D000315 4.1e-105 385.2 238 82.8
MSTRG.5432 Avicennia marina HOM05D004157 ORTHO05D004860 5.4e-105 384.8 264 74.6
HanXRQChr10g0294891 Helianthus annuus HOM05D004157 ORTHO05D004860 7.0e-105 384.4 247 75.7
VMungo1309G1201 Vigna mungo HOM05D004157 ORTHO05D004860 7.0e-105 384.4 270 72.2
Lj5A185T60 Lonicera japonica HOM05D004157 ORTHO05D004860 1.2e-104 383.6 267 72.7
SGA_v2.0_scaffold80G25867 Striga asiatica HOM05D004157 ORTHO05D004860 2.0e-104 382.9 237 81.9
THA.LOC104807783 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 2.7e-104 382.5 267 72.7
Oeu055643.1 Olea europaea HOM05D004157 ORTHO05D004860 3.5e-104 382.1 234 79.1
unitig_21.g20017 Utricularia gibba HOM05D004157 ORTHO05D004860 3.5e-104 382.1 259 74.1
Os06g0112200 Oryza sativa ssp. japonica HOM05D004157 ORTHO05D004860 4.5e-104 381.7 266 72.2
Lj9A389T64 Lonicera japonica HOM05D004157 ORTHO05D004860 5.9e-104 381.3 221 82.8
PSO541G6022 Papaver somniferum HOM05D004157 ORTHO05D004860 5.9e-104 381.3 264 72.3
ClCG02G004360 Citrullus lanatus HOM05D000447 ORTHO05D000315 2.3e-103 379.4 248 79.0
AL7G10670 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 3.8e-103 378.6 267 70.8
unitig_0.g2353 Utricularia gibba HOM05D004157 ORTHO05D004860 3.8e-103 378.6 266 72.6
arahy.Tifrunner.gnm1.ann1.391TM2 Arachis hypogaea HOM05D004157 ORTHO05D004860 5.0e-103 378.3 259 73.0
arahy.Tifrunner.gnm1.ann1.66CLCN Arachis hypogaea HOM05D004157 ORTHO05D004860 5.0e-103 378.3 257 73.5
Thhalv10025990m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 5.0e-103 378.3 267 70.8
vmacro17385 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 8.6e-103 377.5 282 70.6
Duzib052G0280 Durio zibethinus HOM05D004157 ORTHO05D004860 1.1e-102 377.1 266 73.7
Actinidia00586 Actinidia chinensis HOM05D004157 ORTHO05D004860 1.5e-102 376.7 269 72.5
Nitab4.5_0000283g0220 Nicotiana tabacum HOM05D004157 ORTHO05D004860 2.5e-102 375.9 264 74.2
Sed0017382 Sechium edule HOM05D004157 ORTHO05D004860 5.6e-102 374.8 227 83.3
vmacro02241 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 9.5e-102 374.0 262 72.5
Ca_15317_v3 Cicer arietinum L. HOM05D000600 ORTHO05D004860 6.1e-101 371.3 235 77.4
Thhalv10026821m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 6.1e-101 371.3 267 70.0
CARHR247930 Cardamine hirsuta HOM05D004157 ORTHO05D004860 1.0e-100 370.5 267 69.7
AT4G38800 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 2.3e-100 369.4 268 70.1
CAN.G588.18 Capsicum annuum HOM05D004157 ORTHO05D004860 8.9e-100 367.5 234 79.1
DCAR_003693 Daucus carota HOM05D004157 ORTHO05D004860 1.2e-99 367.1 350 57.7
Duzib132G0743 Durio zibethinus HOM05D004157 ORTHO05D004860 1.2e-99 367.1 266 71.8
THA.LOC104819635 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 1.5e-99 366.7 267 69.3
AUR62010110 Chenopodium quinoa HOM05D004157 ORTHO05D004860 3.4e-99 365.5 336 61.3
Zm00001eb036610 Zea mays HOM05D004157 ORTHO05D004860 3.4e-99 365.5 250 72.8
DCAR_028937 Daucus carota HOM05D004157 ORTHO05D004860 9.8e-99 364.0 244 72.1
Sp7g32610 Schrenkiella parvula HOM05D004157 ORTHO05D004860 2.2e-98 362.8 254 69.7
Carub.0007s0065 Capsella rubella HOM05D004157 ORTHO05D004860 3.7e-98 362.1 265 68.3
Aqoxy2G00577 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 6.4e-98 361.3 251 72.1
VMungo1309G1253 Vigna mungo HOM05D004157 ORTHO05D004860 6.4e-98 361.3 244 74.2
Oeu002957.1 Olea europaea HOM05D004157 ORTHO05D004860 5.4e-97 358.2 227 78.0
Aa31LG2G15700 Aethionema arabicum HOM05D004157 ORTHO05D004860 7.0e-97 357.8 267 68.5
Aa31LG6G16410 Aethionema arabicum HOM05D004157 ORTHO05D004860 9.2e-97 357.5 301 63.5
A08p16520 Brassica napus HOM05D004157 ORTHO05D004860 1.2e-96 357.1 267 67.0
BcaC01g00256 Brassica carinata HOM05D004157 ORTHO05D004860 1.6e-96 356.7 266 66.9
AL7G16370 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 2.0e-96 356.3 254 68.5
BcaC01g00866 Brassica carinata HOM05D004157 ORTHO05D004860 2.7e-96 355.9 267 66.7
Glyma.06G005700 Glycine max HOM05D004157 ORTHO05D004860 2.7e-96 355.9 253 69.2
C03p85360 Brassica napus HOM05D004157 ORTHO05D004860 3.9e-95 352.1 267 65.9
BcaB03g11807 Brassica carinata HOM05D004157 ORTHO05D004860 5.0e-95 351.7 267 65.9
BcaB03g12226 Brassica carinata HOM05D004157 ORTHO05D004860 8.6e-95 350.9 266 65.8
A08p24000 Brassica napus HOM05D004157 ORTHO05D004860 1.9e-94 349.7 266 66.9
BolC3t20826H Brassica oleracea HOM05D004157 ORTHO05D004860 1.9e-94 349.7 267 65.9
BraA08t34357Z Brassica rapa HOM05D004157 ORTHO05D004860 1.9e-94 349.7 279 64.5
C03p77330 Brassica napus HOM05D004157 ORTHO05D004860 2.5e-94 349.4 266 66.9
Carub.0007s0546 Capsella rubella HOM05D004157 ORTHO05D004860 3.3e-94 349.0 249 67.5
Hund00051 Selenicereus undatus HOM05D004157 ORTHO05D004860 3.3e-94 349.0 213 80.3
CARHR243130 Cardamine hirsuta HOM05D004157 ORTHO05D004860 5.6e-94 348.2 251 68.9
Zm00001eb175180 Zea mays HOM05D004157 ORTHO05D004860 7.3e-94 347.8 250 71.2
BolC3t19986H Brassica oleracea HOM05D004157 ORTHO05D004860 9.5e-94 347.4 280 63.6
ATR0089G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 3.1e-92 342.4 213 78.4
Prupe.8G159500 Prunus persica HOM05D004157 ORTHO05D004860 4.0e-92 342.0 275 67.6
Phvul.009G000700 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 6.8e-92 341.3 271 64.2
ATR0095G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 1.5e-91 340.1 213 77.9
Ciclev10029225m.g Citrus clementina HOM05D004157 ORTHO05D004860 2.6e-91 339.3 266 69.2
PGR042G3985 Punica granatum HOM05D004157 ORTHO05D004860 1.3e-90 337.0 255 66.7
SHI05673 Sapria himalayana HOM05D004157 ORTHO05D004860 3.7e-90 335.5 212 78.8
HanXRQChr11g0346651 Helianthus annuus HOM05D004157 ORTHO05D004860 1.4e-89 333.6 247 67.6
Actinidia27843 Actinidia chinensis HOM05D004157 ORTHO05D004860 1.0e-87 327.4 253 69.6
SGA_v2.0_scaffold32G13240 Striga asiatica HOM05D004157 ORTHO05D004860 1.6e-85 320.1 263 65.4
Sp7g37020 Schrenkiella parvula HOM05D004157 ORTHO05D004860 4.7e-85 318.5 267 65.5
Eucgr.G01750 Eucalyptus grandis HOM05D004157 ORTHO05D004860 5.2e-84 315.1 243 64.2
Potri.009G128700 Populus trichocarpa HOM05D004157 ORTHO05D004860 8.9e-84 314.3 201 79.6
Cpa.g.sc37.201 Carica papaya HOM05D004157 ORTHO05D004860 2.0e-83 313.2 266 63.9
CDE02G2528 Ceratophyllum demersum HOM05D004157 ORTHO05D004860 7.5e-83 311.2 267 60.7
AT4G34840 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 2.2e-82 309.7 204 74.0
Lsat_1_v5_gn_1_62181 Lactuca sativa HOM05D004157 ORTHO05D004860 1.4e-81 307.0 239 63.6
AUR62013103 Chenopodium quinoa HOM05D004157 ORTHO05D004860 1.0e-79 300.8 184 82.1
vmacro22693 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 1.0e-79 300.8 305 55.1
Rhsim11G0186900 Rhododendron simsii HOM05D004157 ORTHO05D004860 7.3e-78 294.7 216 69.0
Pp3c14_1450 Physcomitrium patens HOM05D004157 ORTHO05D004860 8.9e-76 287.7 243 58.8
Pp3c1_20870 Physcomitrium patens HOM05D004157 ORTHO05D004860 2.6e-75 286.2 249 57.8
Rhsim05G0063700 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.3e-74 283.9 198 76.8
PGR042G2276 Punica granatum HOM05D004157 ORTHO05D004860 7.8e-72 274.6 256 57.4
Mapoly0026s0093 Marchantia polymorpha HOM05D004157 ORTHO05D004860 2.3e-71 273.1 249 54.6
SEGI_37242 Sequoiadendron giganteum HOM05D004157 ORTHO05D004860 8.6e-71 271.2 200 67.5
Pp3c26_5320 Physcomitrium patens HOM05D004157 ORTHO05D004860 3.3e-70 269.2 234 57.3
BraA08t33620Z Brassica rapa HOM05D004157 ORTHO05D004860 4.0e-68 262.3 201 64.7
SMO147G0350 Selaginella moellendorffii HOM05D004157 ORTHO05D004860 2.2e-66 256.5 252 51.6
AagrBONN_evm.TU.Sc2ySwM_368.2286 Anthoceros agrestis HOM05D004157 ORTHO05D004860 9.3e-65 251.1 248 52.4
Dinv04975 Davidia involucrata HOM05D000600 ORTHO05D000432 3.0e-63 246.1 139 85.6
Nitab4.5_0000980g0360 Nicotiana tabacum HOM05D004157 ORTHO05D004860 6.9e-60 235.0 147 81.6
vmacro02237 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 2.9e-58 229.6 207 63.3
MCO15G557 Micromonas commoda HOM05D004157 ORTHO05D004860 1.2e-56 224.2 245 49.0
Cre03.g162550 Chlamydomonas reinhardtii HOM05D004157 ORTHO05D004860 3.0e-55 219.5 234 49.6
Rhsim11G0185600 Rhododendron simsii HOM05D004157 ORTHO05D004860 2.4e-52 209.9 187 61.0
Rhsim11G0186700 Rhododendron simsii HOM05D004157 ORTHO05D004860 6.7e-47 191.8 166 62.7
SalBow3G1540 Salvia bowleyana HOM05D004157 ORTHO05D004860 6.9e-44 181.8 122 73.8
Eucgr.L03396 Eucalyptus grandis HOM05D004157 ORTHO05D004860 2.0e-43 180.3 104 81.7
Hma1.2p1_0032F.1_g019710 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 8.7e-39 164.9 148 64.9
MBI09_g11914_MAGBIO Magnolia biondii HOM05D004157 ORTHO05D004860 8.7e-39 164.9 105 78.1
TAR625G0759 Trochodendron aralioides HOM05D004157 ORTHO05D004860 3.1e-36 156.4 100 80.0
Haze_02206 Corylus avellana HOM05D000447 ORTHO05D000315 8.8e-31 138.3 84 84.5
PRCOL_00006969 Prasinoderma coloniale HOM05D004157 ORTHO05D004860 1.5e-30 137.5 241 36.5
TAR625G0858 Trochodendron aralioides HOM05D004157 ORTHO05D004860 1.7e-29 134.0 177 48.6
C07p63580 Brassica napus HOM05D004157 ORTHO05D004860 6.9e-28 128.6 119 56.3
BolC7t46771H Brassica oleracea HOM05D004157 ORTHO05D004860 6.9e-28 128.6 119 56.3
Medtr0173s0020 Medicago truncatula HOM05D004157 ORTHO05D004860 3.0e-23 113.2 82 68.3
SalBow3G3146 Salvia bowleyana HOM05D004157 ORTHO05D004860 5.1e-23 112.5 141 48.2
arahy.Tifrunner.gnm1.ann1.R1P6K1 Arachis hypogaea HOM05D004157 ORTHO05D004860 3.7e-21 106.3 165 40.0
Glyma.04G006001 Glycine max HOM05D004157 ORTHO05D004860 1.0e-18 98.2 66 68.2
Aqoxy6G02338 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 2.5e-17 93.6 94 52.1
Rhsim01G0041000 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.4e-15 87.8 64 70.3
CBR_g20180 Chara braunii HOM05D004157 ORTHO05D004860 1.1e-14 84.7 99 45.5
vmacro02118 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 1.1e-14 84.7 68 61.8
HPP92_002565 Vanilla planifolia HOM05D004157 ORTHO05D004860 9.4e-09 65.1 123 39.8
Ca_29445_v3 Cicer arietinum L. HOM05D004157 ORTHO05D148328 2.7e-08 63.5 191 26.7
Rhsim11G0185500 Rhododendron simsii HOM05D004157 ORTHO05D004860 3.6e-08 63.2 47 55.3
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 8.8e-07 58.5 35 82.9


User provided reference genes

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