Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G0738 Cannabis sativa HOM05D005414 ORTHO05D006844 7.6e-130 467.2 247 100.0
Atru.chr13.1979 Acer truncatum HOM05D005414 ORTHO05D006844 4.7e-63 245.4 235 58.7
Actinidia17760 Actinidia chinensis HOM05D005414 ORTHO05D006844 4.4e-61 238.8 232 56.0
TPR.G17052 Trifolium pratense HOM05D005414 ORTHO05D006844 1.7e-60 236.9 238 53.8
VMungo0720G1060 Vigna mungo HOM05D005414 ORTHO05D006844 1.7e-60 236.9 238 53.8
Phvul.007G085000 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 4.9e-60 235.3 238 53.8
Lj5g0014662 Lotus japonicus HOM05D005414 ORTHO05D006844 1.1e-59 234.2 238 54.6
RcHm_v2.0_Chr6g0273701 Rosa chinensis HOM05D005414 ORTHO05D006844 3.2e-59 232.6 237 57.0
PGR042G0638 Punica granatum HOM05D005414 ORTHO05D006844 9.2e-59 231.1 231 53.7
Eucgr.F02672 Eucalyptus grandis HOM05D005414 ORTHO05D006844 1.2e-58 230.7 234 53.4
Glyma.20G171300 Glycine max HOM05D005414 ORTHO05D006844 1.6e-58 230.3 238 52.1
Medtr1g097430 Medicago truncatula HOM05D005414 ORTHO05D006844 2.1e-58 229.9 234 53.4
Potri.002G062600 Populus trichocarpa HOM05D005414 ORTHO05D006844 4.6e-58 228.8 227 58.6
Prupe.8G044100 Prunus persica HOM05D005414 ORTHO05D006844 4.6e-58 228.8 242 56.2
Thecc.08G163500 Theobroma cacao HOM05D005414 ORTHO05D006844 6.0e-58 228.4 239 53.6
Phvul.007G085100 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 7.8e-58 228.0 234 53.0
Ciclev10002272m.g Citrus clementina HOM05D005414 ORTHO05D006844 1.0e-57 227.6 238 54.6
FvH4_2g12810 Fragaria vesca HOM05D005414 ORTHO05D006844 1.3e-57 227.3 234 56.0
Duzib041G0057 Durio zibethinus HOM05D005414 ORTHO05D006844 2.3e-57 226.5 240 54.2
Hma1.2p1_2282F.1_g318850 Hydrangea macrophylla HOM05D005414 ORTHO05D006844 2.3e-57 226.5 236 53.4
CiPaw.16G007400 Carya illinoinensis HOM05D005414 ORTHO05D006844 3.0e-57 226.1 240 55.0
Gohir.A06G116400 Gossypium hirsutum HOM05D005414 ORTHO05D006844 3.0e-57 226.1 235 55.3
Psat6g189560 Pisum sativum HOM05D005414 ORTHO05D006844 5.1e-57 225.3 235 52.8
Rhsim06G0093200 Rhododendron simsii HOM05D005414 ORTHO05D006844 5.1e-57 225.3 233 54.1
CSS0029717 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 1.5e-56 223.8 232 54.7
Cc10_g06420 Coffea canephora HOM05D005414 ORTHO05D006844 1.9e-56 223.4 233 53.6
Sc26g0002600 Simmondsia chinensis HOM05D005414 ORTHO05D006844 2.5e-56 223.0 242 51.7
FAN27G1467 Fragaria x ananassa HOM05D005414 ORTHO05D006844 3.3e-56 222.6 242 54.1
Solyc04g072050.4 Solanum lycopersicum HOM05D005414 ORTHO05D006844 5.6e-56 221.9 239 49.8
Sopen04g028220 Solanum pennellii HOM05D005414 ORTHO05D006844 5.6e-56 221.9 239 49.8
CSS0025663 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 7.3e-56 221.5 232 53.9
PGSC0003DMG400031145 Solanum tuberosum HOM05D005414 ORTHO05D006844 7.3e-56 221.5 237 50.2
Sabra05G0151200 Salix brachista HOM05D005414 ORTHO05D006844 9.5e-56 221.1 231 55.4
Lalb_Chr02g0141631 Lupinus albus HOM05D005414 ORTHO05D006844 1.6e-55 220.3 242 50.8
arahy.Tifrunner.gnm1.ann1.X1PAW1 Arachis hypogaea HOM05D005414 ORTHO05D006844 2.8e-55 219.5 245 50.6
Nn5g28873 Nelumbo nucifera HOM05D005414 ORTHO05D000799 2.8e-55 219.5 191 61.3
Gohir.D06G114900 Gossypium hirsutum HOM05D005414 ORTHO05D006844 3.6e-55 219.2 235 54.5
PSO210G6322 Papaver somniferum HOM05D005414 ORTHO05D006844 1.1e-54 217.6 235 52.3
Gorai.010G131400 Gossypium raimondii HOM05D005414 ORTHO05D006844 1.8e-54 216.9 233 54.5
PSO170G2436 Papaver somniferum HOM05D005414 ORTHO05D006844 1.8e-54 216.9 238 50.8
arahy.Tifrunner.gnm1.ann1.66PYZ2 Arachis hypogaea HOM05D005414 ORTHO05D006844 2.3e-54 216.5 245 49.8
Migut.C00158 Erythranthe guttata HOM05D005414 ORTHO05D006844 4.0e-54 215.7 232 50.4
MD10G1038100 Malus domestica HOM05D005414 ORTHO05D006844 8.9e-54 214.5 242 53.3
TAR628G0132 Trochodendron aralioides HOM05D005414 ORTHO05D000799 2.6e-53 213.0 196 57.1
Glyma.20G171400 Glycine max HOM05D005414 ORTHO05D006844 7.6e-53 211.5 240 48.8
Solyc04g072031.1 Solanum lycopersicum HOM05D005414 ORTHO05D006844 3.7e-52 209.1 201 52.7
MBI04_g42207_MAGBIO Magnolia biondii HOM05D005414 ORTHO05D006844 4.9e-52 208.8 256 47.3
GSVIVG01013697001 Vitis vinifera HOM05D005414 ORTHO05D006844 4.9e-52 208.8 222 55.4
HanXRQChr05g0144171 Helianthus annuus HOM05D005414 ORTHO05D006844 6.4e-52 208.4 240 46.2
SGA_v2.0_scaffold188G40302 Striga asiatica HOM05D005414 ORTHO05D006844 4.1e-51 205.7 231 49.4
CAN.G564.21 Capsicum annuum HOM05D005414 ORTHO05D006844 5.4e-51 205.3 196 54.1
MSTRG.24938 Avicennia marina HOM05D005414 ORTHO05D006844 7.1e-51 204.9 231 50.2
Aqoxy5G02011 Aquilegia oxysepala HOM05D005414 ORTHO05D006844 1.2e-50 204.1 196 54.6
THA.LOC104809748 Tarenaya hassleriana HOM05D005414 ORTHO05D006844 2.1e-50 203.4 246 47.6
SalBow7G3693 Salvia bowleyana HOM05D005414 ORTHO05D006844 5.1e-49 198.7 234 46.6
BcaNung07190 Brassica carinata HOM05D005414 ORTHO05D006844 9.6e-48 194.5 243 48.1
Peaxi162Scf00226g00114 Petunia axillaris HOM05D005414 ORTHO05D006844 1.2e-47 194.1 261 42.9
BolC5t30882H Brassica oleracea HOM05D005414 ORTHO05D006844 2.1e-47 193.4 243 48.1
A09p41990 Brassica napus HOM05D005414 ORTHO05D006844 3.6e-47 192.6 237 48.5
BraA09t39686Z Brassica rapa HOM05D005414 ORTHO05D006844 3.6e-47 192.6 237 48.5
ECA232G1443 Erigeron canadensis HOM05D005414 ORTHO05D006844 1.1e-46 191.0 233 45.1
C05p21870 Brassica napus HOM05D005414 ORTHO05D006844 1.4e-46 190.7 243 47.3
BcaNung07397 Brassica carinata HOM05D005414 ORTHO05D006844 1.8e-46 190.3 243 47.3
vmacro21198 Vaccinium macrocarpon HOM05D005414 ORTHO05D006844 2.4e-46 189.9 203 52.2
Aa31LG7G6700 Aethionema arabicum HOM05D005414 ORTHO05D006844 1.5e-45 187.2 237 48.5
Manes.18G096200 Manihot esculenta HOM05D005414 ORTHO05D006844 2.0e-45 186.8 202 51.5
CDE05G3275 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 3.4e-45 186.0 240 44.2
Thhalv10008541m.g Eutrema salsugineum HOM05D005414 ORTHO05D006844 3.4e-45 186.0 237 48.1
Sp1g20260 Schrenkiella parvula HOM05D005414 ORTHO05D006844 3.4e-45 186.0 243 46.9
AT1G22750 Arabidopsis thaliana HOM05D005414 ORTHO05D006844 4.4e-45 185.7 234 47.9
AL1G36290 Arabidopsis lyrata HOM05D005414 ORTHO05D006844 2.9e-44 183.0 243 46.9
Lsat_1_v5_gn_9_42501 Lactuca sativa HOM05D005414 ORTHO05D006844 8.4e-44 181.4 233 43.3
Sed0023257 Sechium edule HOM05D005414 ORTHO05D006844 8.4e-44 181.4 245 44.5
unitig_32.g11168 Utricularia gibba HOM05D005414 ORTHO05D006844 1.1e-43 181.0 237 44.3
Carub.0001s2226 Capsella rubella HOM05D005414 ORTHO05D006844 1.4e-43 180.6 237 46.8
CDE05G1245 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 1.9e-43 180.3 219 45.7
Oeu061453.3 Olea europaea HOM05D005414 ORTHO05D006844 4.6e-42 175.6 201 49.8
CAN.G564.22 Capsicum annuum HOM05D005414 ORTHO05D006844 1.0e-41 174.5 196 46.9
TWI60G0913 Tripterygium wilfordii HOM05D005414 ORTHO05D006844 3.9e-41 172.6 210 50.0
FAN24G1739 Fragaria x ananassa HOM05D005414 ORTHO05D006844 5.1e-41 172.2 241 46.9
Os06g0581300 Oryza sativa ssp. japonica HOM05D005414 ORTHO05D006844 1.1e-40 171.0 221 42.5
Lsat_1_v5_gn_4_170780 Lactuca sativa HOM05D005414 ORTHO05D006844 1.9e-40 170.2 231 43.3
QL02p036452 Quercus lobata HOM05D005414 ORTHO05D006844 7.3e-40 168.3 219 47.5
Zm00001eb385480 Zea mays HOM05D005414 ORTHO05D006844 9.6e-40 167.9 221 43.9
ClCG08G007190 Citrullus lanatus HOM05D005414 ORTHO05D006844 1.3e-39 167.5 238 43.3
CsaV3_6G004870 Cucumis sativus L. HOM05D005414 ORTHO05D006844 2.1e-39 166.8 251 41.4
Potri.005G198600 Populus trichocarpa HOM05D005414 ORTHO05D006844 1.1e-38 164.5 197 49.7
MELO3C030042.2 Cucumis melo HOM05D005414 ORTHO05D006844 1.8e-38 163.7 241 41.5
DCAR_009609 Daucus carota HOM05D005414 ORTHO05D006844 6.4e-36 155.2 178 48.9
HanXRQChr11g0320131 Helianthus annuus HOM05D005414 ORTHO05D006844 8.4e-36 154.8 231 36.8
HanXRQChr11g0320121 Helianthus annuus HOM05D005414 ORTHO05D006844 1.1e-35 154.5 242 37.6
Lsat_1_v5_gn_9_42481 Lactuca sativa HOM05D005414 ORTHO05D006844 7.1e-35 151.8 141 58.2
Nitab4.5_0001000g0190 Nicotiana tabacum HOM05D005414 ORTHO05D006844 2.1e-34 150.2 233 39.1
MELO3C019962.2 Cucumis melo HOM05D005414 ORTHO05D006844 3.0e-33 146.4 245 38.4
Cpa.g.sc26.122 Carica papaya HOM05D005414 ORTHO05D006844 3.9e-33 146.0 159 50.9
CsaV3_6G004860 Cucumis sativus L. HOM05D005414 ORTHO05D006844 3.9e-33 146.0 244 39.3
ECA232G3911 Erigeron canadensis HOM05D005414 ORTHO05D006844 1.5e-32 144.1 239 36.4
QL02p036925 Quercus lobata HOM05D005414 ORTHO05D006844 2.5e-32 143.3 294 35.7
HanXRQChr11g0320151 Helianthus annuus HOM05D005414 ORTHO05D006844 3.3e-32 142.9 232 37.5
Sabra02G0050500 Salix brachista HOM05D005414 ORTHO05D006844 7.3e-32 141.7 199 46.7
HanXRQChr07g0196141 Helianthus annuus HOM05D005414 ORTHO05D006844 9.6e-32 141.4 194 41.8
Hund26672 Selenicereus undatus HOM05D005414 ORTHO05D006844 1.3e-31 141.0 191 43.5
FAN15G1775 Fragaria x ananassa HOM05D005414 ORTHO05D006844 2.1e-31 140.2 267 38.2
Lsat_1_v5_gn_1_83841 Lactuca sativa HOM05D005414 ORTHO05D006844 2.0e-29 133.7 178 42.1
HanXRQChr15g0485041 Helianthus annuus HOM05D005414 ORTHO05D006844 4.5e-29 132.5 192 42.7
HanXRQChr11g0320141 Helianthus annuus HOM05D005414 ORTHO05D006844 3.8e-28 129.4 234 35.9
Nitab4.5_0007691g0020 Nicotiana tabacum HOM05D005414 ORTHO05D006844 1.1e-27 127.9 238 37.4
Sopen04g028200 Solanum pennellii HOM05D005414 ORTHO05D006844 1.1e-27 127.9 121 52.1
ATR1120G143 Amborella trichopoda HOM05D005414 ORTHO05D006844 3.2e-27 126.3 109 60.6
HanXRQChr15g0484681 Helianthus annuus HOM05D005414 ORTHO05D006844 9.3e-27 124.8 234 38.0
HPP92_008789 Vanilla planifolia HOM05D005414 ORTHO05D006844 1.0e-25 121.3 108 56.5
Lsat_1_v5_gn_2_41300 Lactuca sativa HOM05D005414 ORTHO05D006844 2.3e-25 120.2 197 37.6
SEGI_39181 Sequoiadendron giganteum HOM05D005414 ORTHO05D006844 2.3e-25 120.2 113 57.5
ECA232G0081 Erigeron canadensis HOM05D005414 ORTHO05D006844 4.3e-24 115.9 150 42.0
HanXRQChr15g0484961 Helianthus annuus HOM05D005414 ORTHO05D006844 5.6e-24 115.5 225 37.8
CARHR023110 Cardamine hirsuta HOM05D005414 ORTHO05D006844 1.8e-22 110.5 148 48.0
SMO331G0045 Selaginella moellendorffii HOM05D005414 ORTHO05D006844 1.0e-20 104.8 111 48.6
AUR62032103 Chenopodium quinoa HOM05D005414 ORTHO05D006844 1.3e-20 104.4 113 54.0
EL10Ac1g01628 Beta vulgaris HOM05D005414 ORTHO05D006844 6.5e-20 102.1 152 44.1
Pp3c21_15140 Physcomitrium patens HOM05D005414 ORTHO05D006844 2.5e-19 100.1 106 51.9
Lsat_1_v5_gn_1_83961 Lactuca sativa HOM05D005414 ORTHO05D006844 2.7e-18 96.7 191 36.1
TPR.G31416 Trifolium pratense HOM05D005414 ORTHO05D006844 6.0e-18 95.5 104 45.2
AUR62034915 Chenopodium quinoa HOM05D005414 ORTHO05D006844 7.4e-16 88.6 161 37.3
Lsat_1_v5_gn_1_117841 Lactuca sativa HOM05D001315 ORTHO05D004199 1.6e-15 87.4 112 45.5
Lsat_1_v5_gn_1_20800 Lactuca sativa HOM05D000069 ORTHO05D006844 1.6e-15 87.4 112 45.5
CBR_g58808 Chara braunii HOM05D005414 ORTHO05D006844 2.6e-13 80.1 106 47.2
Mapoly0067s0091 Marchantia polymorpha HOM05D005414 ORTHO05D006844 2.6e-13 80.1 112 43.8
AagrBONN_evm.TU.Sc2ySwM_228.1176 Anthoceros agrestis HOM05D005414 ORTHO05D006844 4.5e-13 79.3 115 40.0
Sed0017348 Sechium edule HOM05D005414 ORTHO05D006844 2.2e-12 77.0 114 42.1
Lsat_1_v5_gn_1_83821 Lactuca sativa HOM05D005414 ORTHO05D006844 2.7e-10 70.1 97 43.3
Lsat_1_v5_gn_9_72760 Lactuca sativa HOM05D005414 ORTHO05D006844 1.8e-09 67.4 219 25.6
Ah.16g108650 Amaranthus hybridus HOM05D005414 ORTHO05D006844 3.0e-09 66.6 75 44.0
HanXRQChr11g0320081 Helianthus annuus HOM05D005414 ORTHO05D006844 1.1e-08 64.7 72 48.6
CAN.G564.24 Capsicum annuum HOM05D005414 ORTHO05D006844 4.3e-08 62.8 115 34.8
Lsat_1_v5_gn_4_15661 Lactuca sativa HOM05D001315 ORTHO05D004199 3.1e-06 56.6 70 44.3
Lsat_1_v5_gn_5_58841 Lactuca sativa HOM05D001315 ORTHO05D004199 3.1e-06 56.6 70 44.3
Lsat_1_v5_gn_6_15761 Lactuca sativa HOM05D001315 ORTHO05D004199 3.1e-06 56.6 70 44.3


User provided reference genes

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