Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G0680 Cannabis sativa HOM05D006788 ORTHO05D008265 0.0e+00 1884.4 1028 100.0
Prupe.1G380200 Prunus persica HOM05D006788 ORTHO05D008265 2.0e-179 634.0 1069 43.2
QL02p008476 Quercus lobata HOM05D006788 ORTHO05D008265 1.3e-178 631.3 1127 41.3
Cfa018147 Carpinus fangiana HOM05D006788 ORTHO05D008265 3.1e-161 573.5 1071 41.0
RcHm_v2.0_Chr5g0052261 Rosa chinensis HOM05D006788 ORTHO05D008265 2.7e-160 570.5 1055 41.2
CiPaw.15G077700 Carya illinoinensis HOM05D006788 ORTHO05D008265 1.7e-159 567.8 1127 39.7
Potri.002G261700 Populus trichocarpa HOM05D006788 ORTHO05D008265 3.6e-157 560.1 1121 39.0
FvH4_2g39870 Fragaria vesca HOM05D006788 ORTHO05D008265 2.0e-155 554.3 1050 41.0
FAN20G0511 Fragaria x ananassa HOM05D006788 ORTHO05D008265 6.4e-154 549.3 1065 40.6
MD08G1035200 Malus domestica HOM05D006788 ORTHO05D008265 1.0e-151 542.0 1066 40.5
COL.COLO4_26325 Corchorus olitorius HOM05D006788 ORTHO05D008265 8.6e-151 538.9 1129 38.0
Thecc.08G025800 Theobroma cacao HOM05D006788 ORTHO05D008265 1.5e-150 538.1 1130 38.1
FAN27G2706 Fragaria x ananassa HOM05D006788 ORTHO05D008265 1.9e-150 537.7 1046 41.0
Duzib093G0366 Durio zibethinus HOM05D006788 ORTHO05D008265 3.3e-150 537.0 1132 37.5
Haze_17976 Corylus avellana HOM05D006788 ORTHO05D008265 3.6e-149 533.5 1097 39.9
TWI56G0676 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 4.4e-147 526.6 1136 36.5
Potri.014G185300 Populus trichocarpa HOM05D006788 ORTHO05D008265 9.8e-147 525.4 1138 36.4
Sabra14G0142000 Salix brachista HOM05D006788 ORTHO05D008265 3.2e-145 520.4 1120 38.0
Duzib116G0613 Durio zibethinus HOM05D006788 ORTHO05D008265 4.1e-145 520.0 1136 37.3
Dinv36075 Davidia involucrata HOM05D006788 ORTHO05D008265 7.0e-145 519.2 1131 37.8
TWI36G0908 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 2.5e-142 510.8 1128 36.4
Ciclev10018661m.g Citrus clementina HOM05D006788 ORTHO05D008265 9.5e-142 508.8 1096 39.4
Gorai.010G010600 Gossypium raimondii HOM05D006788 ORTHO05D008265 4.9e-138 496.5 1121 35.6
Gohir.A06G010500 Gossypium hirsutum HOM05D006788 ORTHO05D008265 5.4e-137 493.0 1123 35.5
Gohir.D06G007900 Gossypium hirsutum HOM05D006788 ORTHO05D008265 5.4e-137 493.0 1122 35.7
CSS0004157 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 2.4e-129 467.6 1111 36.1
MD15G1031800 Malus domestica HOM05D006788 ORTHO05D008265 2.4e-129 467.6 1039 37.6
Manes.05G160500 Manihot esculenta HOM05D006788 ORTHO05D008265 4.2e-129 466.8 1112 35.9
Manes.18G027700 Manihot esculenta HOM05D006788 ORTHO05D008265 1.2e-123 448.7 1052 36.2
GSVIVG01009701001 Vitis vinifera HOM05D006788 ORTHO05D008265 1.3e-119 435.3 1072 35.4
Eucgr.F01564 Eucalyptus grandis HOM05D006788 ORTHO05D008265 4.3e-118 430.3 1099 35.4
Dinv39415 Davidia involucrata HOM05D006788 ORTHO05D008265 1.6e-117 428.3 1073 36.3
Cc10_g02940 Coffea canephora HOM05D006788 ORTHO05D008265 1.1e-116 425.6 1084 35.1
Hma1.2p1_0203F.1_g086400 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 9.0e-116 422.5 1080 35.7
ClCG05G019050 Citrullus lanatus HOM05D006788 ORTHO05D008265 4.5e-115 420.2 1146 33.0
arahy.Tifrunner.gnm1.ann1.50JV45 Arachis hypogaea HOM05D006788 ORTHO05D008265 1.2e-112 412.1 1087 35.1
vmacro21636 Vaccinium macrocarpon HOM05D006788 ORTHO05D008265 1.2e-112 412.1 1114 34.8
Glyma.05G248700 Glycine max HOM05D006788 ORTHO05D008265 1.6e-112 411.8 1109 35.4
Lj4A785T32 Lonicera japonica HOM05D006788 ORTHO05D008265 2.1e-112 411.4 1076 35.4
arahy.Tifrunner.gnm1.ann1.HV2TRI Arachis hypogaea HOM05D006788 ORTHO05D008265 1.8e-111 408.3 1084 35.2
Rhsim06G0034200 Rhododendron simsii HOM05D006788 ORTHO05D008265 9.6e-110 402.5 1093 34.9
Gohir.A05G194600 Gossypium hirsutum HOM05D006788 ORTHO05D008265 2.1e-109 401.4 1073 33.6
TAR381G0400 Trochodendron aralioides HOM05D006788 ORTHO05D008265 1.1e-108 399.1 1076 34.3
CsaV3_3G045060 Cucumis sativus L. HOM05D006788 ORTHO05D008265 1.2e-107 395.6 1141 32.9
VMungo0251G0495 Vigna mungo HOM05D006788 ORTHO05D008265 2.2e-106 391.3 1099 35.5
Glyma.08G057300 Glycine max HOM05D006788 ORTHO05D008265 1.6e-104 385.2 1103 34.6
Gorai.009G202800 Gossypium raimondii HOM05D006788 ORTHO05D008265 1.3e-103 382.1 1108 33.7
MELO3C003844.2 Cucumis melo HOM05D006788 ORTHO05D008265 2.3e-103 381.3 1144 32.7
Nitab4.5_0009150g0020 Nicotiana tabacum HOM05D006788 ORTHO05D008265 2.3e-103 381.3 1102 33.7
Nn5g29585 Nelumbo nucifera HOM05D006788 ORTHO05D008265 4.3e-102 377.1 1100 32.0
Solyc04g080270.4 Solanum lycopersicum HOM05D006788 ORTHO05D008265 4.3e-102 377.1 1093 34.2
Phvul.002G333000 Phaseolus vulgaris HOM05D006788 ORTHO05D008265 3.7e-101 374.0 1113 33.9
Sopen04g033860 Solanum pennellii HOM05D006788 ORTHO05D008265 6.9e-100 369.8 1095 33.5
PGSC0003DMG400005137 Solanum tuberosum HOM05D006788 ORTHO05D008265 2.6e-99 367.9 1103 34.0
PGR083G0386 Punica granatum HOM05D006788 ORTHO05D008265 7.6e-99 366.3 1031 32.8
Peaxi162Scf00417g01019 Petunia axillaris HOM05D006788 ORTHO05D008265 2.5e-97 361.3 1111 32.9
DCAR_008759 Daucus carota HOM05D006788 ORTHO05D008265 2.3e-95 354.8 1075 32.4
THA.LOC104798640 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 3.1e-92 344.4 1087 33.2
Gorai.005G107800 Gossypium raimondii HOM05D006788 ORTHO05D008265 3.4e-91 340.9 1024 32.1
LjContig00484g0028229 Lotus japonicus HOM05D006788 ORTHO05D008265 5.9e-91 340.1 1137 32.2
Cpa.g.sc36.71 Carica papaya HOM05D006788 ORTHO05D008265 2.5e-89 334.7 860 35.5
Actinidia22550 Actinidia chinensis HOM05D006788 ORTHO05D008265 7.2e-89 333.2 945 34.3
Nitab4.5_0000110g0630 Nicotiana tabacum HOM05D006788 ORTHO05D008265 2.7e-88 331.3 1067 32.5
Gohir.A03G078650 Gossypium hirsutum HOM05D006788 ORTHO05D008265 3.7e-85 320.9 1026 31.2
AUR62007432 Chenopodium quinoa HOM05D006788 ORTHO05D008265 4.8e-85 320.5 1081 30.5
MSTRG.24293 Avicennia marina HOM05D006788 ORTHO05D008265 1.8e-84 318.5 1067 30.3
Sp2g07230 Schrenkiella parvula HOM05D006788 ORTHO05D008265 4.5e-83 313.9 1035 30.6
CSS0005112 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 1.7e-82 312.0 828 35.1
AUR62027306 Chenopodium quinoa HOM05D006788 ORTHO05D008265 2.9e-82 311.2 1082 30.2
Aqoxy5G01647 Aquilegia oxysepala HOM05D006788 ORTHO05D008265 5.0e-82 310.5 1113 30.2
MBI16_g34334_MAGBIO Magnolia biondii HOM05D006788 ORTHO05D008265 1.2e-80 305.8 1132 29.9
Aa31LG9G12770 Aethionema arabicum HOM05D006788 ORTHO05D008265 1.8e-79 302.0 1021 30.3
SGA_v2.0_scaffold326G48711 Striga asiatica HOM05D006788 ORTHO05D008265 3.9e-79 300.8 1063 28.8
Medtr8g107730 Medicago truncatula HOM05D006788 ORTHO05D008265 7.4e-78 296.6 1034 30.8
TPR.G1461 Trifolium pratense HOM05D006788 ORTHO05D008265 8.2e-77 293.1 1039 30.5
Atru.chr13.488 Acer truncatum HOM05D006788 ORTHO05D008265 4.1e-76 290.8 471 45.0
BolC9t55417H Brassica oleracea HOM05D006788 ORTHO05D008265 1.9e-73 282.0 1029 29.2
Lsat_1_v5_gn_5_29160 Lactuca sativa HOM05D006788 ORTHO05D008265 2.1e-72 278.5 1039 30.4
A09p19890 Brassica napus HOM05D006788 ORTHO05D008265 2.7e-72 278.1 1029 29.2
BcaC04g21980 Brassica carinata HOM05D006788 ORTHO05D008265 6.1e-72 276.9 1028 29.1
C09p25220 Brassica napus HOM05D006788 ORTHO05D008265 6.1e-72 276.9 1030 29.1
Migut.N00496 Erythranthe guttata HOM05D006788 ORTHO05D008265 1.0e-71 276.2 1026 29.2
Gohir.D05G197766 Gossypium hirsutum HOM05D006788 ORTHO05D008265 1.8e-71 275.4 1034 29.3
Ah.08g219690 Amaranthus hybridus HOM05D006788 ORTHO05D008265 8.8e-71 273.1 1051 28.8
ECA246G4903 Erigeron canadensis HOM05D006788 ORTHO05D008265 1.1e-70 272.7 1053 30.1
BraA09t37598Z Brassica rapa HOM05D006788 ORTHO05D008265 2.0e-70 271.9 1028 29.4
AL8G18450 Arabidopsis lyrata HOM05D006788 ORTHO05D008265 3.7e-69 267.7 1044 29.1
Sc15g0006920 Simmondsia chinensis HOM05D000020 ORTHO05D008265 5.9e-67 260.4 912 30.0
PSO700G0053 Papaver somniferum HOM05D006788 ORTHO05D008265 1.0e-66 259.6 1051 27.8
CARHR181620 Cardamine hirsuta HOM05D006788 ORTHO05D008265 5.0e-66 257.3 1028 29.5
PSO081G0175 Papaver somniferum HOM05D006788 ORTHO05D008265 5.0e-66 257.3 1082 29.0
Thhalv10003405m.g Eutrema salsugineum HOM05D006788 ORTHO05D008265 1.6e-64 252.3 1026 28.6
HanXRQChr05g0151911 Helianthus annuus HOM05D006788 ORTHO05D008265 2.7e-64 251.5 1032 30.8
Sed0005360 Sechium edule HOM05D006788 ORTHO05D008265 2.7e-64 251.5 859 32.0
Carub.0008s0625 Capsella rubella HOM05D006788 ORTHO05D008265 4.7e-64 250.8 1027 28.1
BcaB07g31060 Brassica carinata HOM05D006788 ORTHO05D008265 1.8e-63 248.8 1044 27.5
Lalb_Chr05g0221391 Lupinus albus HOM05D006788 ORTHO05D008265 1.6e-59 235.7 817 32.8
AT5G42710 Arabidopsis thaliana HOM05D006788 ORTHO05D008265 6.1e-56 223.8 1029 28.8
Actinidia15324 Actinidia chinensis HOM05D006788 ORTHO05D008265 1.5e-54 219.2 720 34.2
Ca_17169_v3 Cicer arietinum L. HOM05D005071 ORTHO05D006069 1.2e-48 199.5 948 27.7
Cpa.g.sc36.70 Carica papaya HOM05D006788 ORTHO05D008265 1.1e-44 186.4 201 50.7
ATR0733G187 Amborella trichopoda HOM05D006788 ORTHO05D008265 1.6e-43 182.6 1225 25.1
RcHm_v2.0_Chr6g0300941 Rosa chinensis HOM05D006788 ORTHO05D008265 1.6e-43 182.6 186 52.2
Psat7g000480 Pisum sativum HOM05D006788 ORTHO05D008265 8.6e-42 176.8 703 32.7
Duzib041G0403 Durio zibethinus HOM05D006788 ORTHO05D008265 1.2e-40 172.9 354 37.9
THA.LOC104813209 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 3.1e-39 168.3 1026 26.8
Hma1.2p1_2195F.1_g316830 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 1.7e-34 152.5 393 33.3
HPP92_019509 Vanilla planifolia HOM05D006788 ORTHO05D008265 1.2e-32 146.4 1053 24.2
Atru.chr13.490 Acer truncatum HOM05D006788 ORTHO05D008265 9.2e-28 130.2 123 55.3
Zm00001eb213730 Zea mays HOM05D006788 ORTHO05D008265 2.2e-21 109.0 1042 22.6
ATR0315G161 Amborella trichopoda HOM05D005593 ORTHO05D006515 4.3e-17 94.7 228 36.8
CDE07G1328 Ceratophyllum demersum HOM05D006788 ORTHO05D008265 2.1e-16 92.4 171 33.9
Os03g0775700 Oryza sativa ssp. japonica HOM05D006788 ORTHO05D008265 2.1e-16 92.4 1042 23.1
Thecc.09G108000 Theobroma cacao HOM05D005593 ORTHO05D006515 4.7e-16 91.3 876 22.9
Psat1g043640 Pisum sativum HOM05D005593 ORTHO05D006515 1.5e-14 86.3 878 23.5
CANSAT56G2752 Cannabis sativa HOM05D005593 ORTHO05D006515 7.6e-14 84.0 928 21.8
Manes.16G114300 Manihot esculenta HOM05D005593 ORTHO05D006515 1.7e-13 82.8 889 23.7
Cpa.g.sc23.90 Carica papaya HOM05D005593 ORTHO05D006515 1.4e-12 79.7 274 32.1
QL02p043456 Quercus lobata HOM05D005593 ORTHO05D006515 3.2e-12 78.6 283 31.8
vmacro20713 Vaccinium macrocarpon HOM05D005593 ORTHO05D006515 5.4e-12 77.8 153 35.3
CiPaw.04G162900 Carya illinoinensis HOM05D005593 ORTHO05D006515 9.3e-12 77.0 288 31.2
Rhsim01G0100000 Rhododendron simsii HOM05D005593 ORTHO05D006515 9.3e-12 77.0 155 35.5
Ca_25537_v3 Cicer arietinum L. HOM05D005593 ORTHO05D006515 6.0e-11 74.3 873 24.9
Lj7E653T1 Lonicera japonica HOM05D005593 ORTHO05D006515 7.8e-11 73.9 72 50.0
arahy.Tifrunner.gnm1.ann1.F0KYD5 Arachis hypogaea HOM05D005593 ORTHO05D006515 1.0e-10 73.6 873 21.6
Duzib150G1551 Durio zibethinus HOM05D005593 ORTHO05D006515 1.7e-10 72.8 883 23.0
Gorai.001G005900 Gossypium raimondii HOM05D005593 ORTHO05D006515 1.7e-10 72.8 890 21.9
Gohir.D07G006300 Gossypium hirsutum HOM05D005593 ORTHO05D006515 3.9e-10 71.6 888 22.0
Nn2g11698 Nelumbo nucifera HOM05D005593 ORTHO05D006515 3.9e-10 71.6 232 31.0
Atru.chr13.489 Acer truncatum HOM05D006788 ORTHO05D008265 5.1e-10 71.2 364 27.7
RcHm_v2.0_Chr2g0090061 Rosa chinensis HOM05D005593 ORTHO05D006515 6.6e-10 70.9 921 22.5
Gohir.A07G005700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 1.1e-09 70.1 212 31.1
MD15G1182400 Malus domestica HOM05D005593 ORTHO05D006515 1.5e-09 69.7 273 30.8
Rhsim01G0098000 Rhododendron simsii HOM05D005593 ORTHO05D006515 1.5e-09 69.7 167 30.5
MSTRG.19579 Avicennia marina HOM05D005593 ORTHO05D006515 1.9e-09 69.3 258 28.3
Duzib187G0236 Durio zibethinus HOM05D005593 ORTHO05D006515 1.9e-09 69.3 894 23.7
Dinv11466 Davidia involucrata HOM05D005593 ORTHO05D006515 3.3e-09 68.6 211 33.6
Manes.03G022200 Manihot esculenta HOM05D005593 ORTHO05D006515 3.3e-09 68.6 893 21.8
Sabra18G0070100 Salix brachista HOM05D005593 ORTHO05D006515 3.3e-09 68.6 243 32.5
Gohir.D06G062400 Gossypium hirsutum HOM05D005593 ORTHO05D006515 4.3e-09 68.2 901 24.0
Gorai.010G072700 Gossypium raimondii HOM05D005593 ORTHO05D006515 4.3e-09 68.2 886 22.3
Lalb_Chr22g0352731 Lupinus albus HOM05D005593 ORTHO05D006515 4.3e-09 68.2 930 21.5
PGSC0003DMG400015636 Solanum tuberosum HOM05D005593 ORTHO05D006515 4.3e-09 68.2 377 27.9
PGSC0003DMG400000308 Solanum tuberosum HOM05D005593 ORTHO05D006515 9.6e-09 67.0 170 30.6
CSS0038657 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 1.3e-08 66.6 202 30.7
Ciclev10007444m.g Citrus clementina HOM05D005593 ORTHO05D006515 1.3e-08 66.6 250 29.6
Cc06_g09850 Coffea canephora HOM05D005593 ORTHO05D006515 1.3e-08 66.6 902 23.1
TWI34G0072 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 2.1e-08 65.9 168 31.0
Haze_25764 Corylus avellana HOM05D005593 ORTHO05D006515 3.6e-08 65.1 305 27.2
Dinv41619 Davidia involucrata HOM05D005593 ORTHO05D006515 6.2e-08 64.3 880 23.8
CDE04G2912 Ceratophyllum demersum HOM05D006788 ORTHO05D008265 1.1e-07 63.5 272 29.0
MBI04_g19171_MAGBIO Magnolia biondii HOM05D005593 ORTHO05D006515 1.4e-07 63.2 118 39.0
ClCG11G002410 Citrullus lanatus HOM05D005593 ORTHO05D006515 2.4e-07 62.4 266 26.7
Gohir.A06G063700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 5.3e-07 61.2 888 22.2
Medtr6g087760 Medicago truncatula HOM05D005593 ORTHO05D006515 5.3e-07 61.2 271 26.6
Peaxi162Scf01363g00023 Petunia axillaris HOM05D005593 ORTHO05D006515 5.3e-07 61.2 908 20.8
RcHm_v2.0_Chr6g0300961 Rosa chinensis HOM05D006788 ORTHO05D008265 5.3e-07 61.2 37 86.5
Lsat_1_v5_gn_5_103481 Lactuca sativa HOM05D005593 ORTHO05D006515 9.0e-07 60.5 308 27.3
Lalb_Chr14g0371581 Lupinus albus HOM05D005593 ORTHO05D006515 9.0e-07 60.5 278 25.2
Hund09560 Selenicereus undatus HOM05D005593 ORTHO05D006515 1.5e-06 59.7 175 26.9
Solyc12g007140.3 Solanum lycopersicum HOM05D005593 ORTHO05D006515 2.0e-06 59.3 366 23.2
TWI34G0806 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 2.0e-06 59.3 505 23.4
Rhsim01G0099500 Rhododendron simsii HOM05D005593 ORTHO05D006515 3.4e-06 58.5 169 35.5
FAN26G1119 Fragaria x ananassa HOM05D005593 ORTHO05D006515 4.4e-06 58.2 920 21.8
Peaxi162Scf00207g01317 Petunia axillaris HOM05D005593 ORTHO05D006515 5.8e-06 57.8 911 23.4
PSO832G1383 Papaver somniferum HOM05D005593 ORTHO05D006515 7.6e-06 57.4 984 22.6
Sopen07g016890 Solanum pennellii HOM05D005593 ORTHO05D006515 7.6e-06 57.4 271 25.5
Aa31sc586G30 Aethionema arabicum HOM05D005593 ORTHO05D006515 9.9e-06 57.0 295 29.2
Oeu064588.2 Olea europaea HOM05D005593 ORTHO05D006515 9.9e-06 57.0 947 21.2
Sed0013092 Sechium edule HOM05D005593 ORTHO05D006515 9.9e-06 57.0 341 24.3
TWI63G0748 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 9.9e-06 57.0 899 24.9


User provided reference genes

Program Settings