Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G0676 Cannabis sativa HOM05D003923 ORTHO05D004553 8.0e-157 557.4 351 100.0
QL12p036407 Quercus lobata HOM05D003923 ORTHO05D004553 1.1e-94 350.9 364 62.1
CiPaw.07G181200 Carya illinoinensis HOM05D003923 ORTHO05D004553 2.8e-93 346.3 355 62.8
Cfa013623 Carpinus fangiana HOM05D003923 ORTHO05D004553 3.4e-91 339.3 357 61.3
Gohir.A05G227800 Gossypium hirsutum HOM05D003923 ORTHO05D004553 7.6e-91 338.2 363 60.3
Thecc.08G109100 Theobroma cacao HOM05D003923 ORTHO05D004553 2.4e-89 333.2 361 62.0
Gorai.009G238400 Gossypium raimondii HOM05D003923 ORTHO05D004553 4.2e-89 332.4 358 60.3
Haze_22250 Corylus avellana HOM05D003923 ORTHO05D004553 2.7e-88 329.7 358 61.2
Manes.18G068600 Manihot esculenta HOM05D003923 ORTHO05D004553 7.9e-88 328.2 369 62.9
FvH4_5g37730 Fragaria vesca HOM05D003923 ORTHO05D004553 1.8e-87 327.0 363 59.5
FAN18G1313 Fragaria x ananassa HOM05D003923 ORTHO05D004553 1.8e-87 327.0 363 57.6
Gohir.D05G230200 Gossypium hirsutum HOM05D003923 ORTHO05D004553 3.0e-87 326.2 357 59.7
FAN13G1718 Fragaria x ananassa HOM05D003923 ORTHO05D004553 8.7e-87 324.7 362 55.8
Lalb_Chr08g0241981 Lupinus albus HOM05D003923 ORTHO05D004553 1.5e-86 323.9 369 55.6
FAN04G1592 Fragaria x ananassa HOM05D003923 ORTHO05D004553 1.9e-86 323.6 362 58.0
RcHm_v2.0_Chr7g0239471 Rosa chinensis HOM05D003923 ORTHO05D004553 2.5e-86 323.2 364 58.2
Sabra05G0125400 Salix brachista HOM05D003923 ORTHO05D004553 3.3e-86 322.8 356 59.0
MD08G1180900 Malus domestica HOM05D003923 ORTHO05D004553 9.6e-86 321.2 367 56.9
TWI56G0888 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 9.6e-86 321.2 364 62.6
FAN08G0462 Fragaria x ananassa HOM05D003923 ORTHO05D004553 1.3e-85 320.9 362 58.3
CSS0021337 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 8.1e-85 318.2 356 62.1
CiPaw.08G044000 Carya illinoinensis HOM05D003923 ORTHO05D004553 1.1e-84 317.8 357 57.1
Prupe.1G514400 Prunus persica HOM05D003923 ORTHO05D004553 3.1e-84 316.2 374 58.8
Gohir.D06G037500 Gossypium hirsutum HOM05D003923 ORTHO05D004553 5.3e-84 315.5 367 59.1
Cpa.g.sc36.119 Carica papaya HOM05D003923 ORTHO05D004553 6.9e-84 315.1 369 59.1
Phvul.009G029900 Phaseolus vulgaris HOM05D003923 ORTHO05D004553 1.2e-83 314.3 359 59.6
Potri.005G166400 Populus trichocarpa HOM05D003923 ORTHO05D004553 1.5e-83 313.9 354 59.0
Duzib093G1759 Durio zibethinus HOM05D003923 ORTHO05D004553 2.6e-83 313.2 377 59.4
MD15G1366500 Malus domestica HOM05D003923 ORTHO05D004553 2.6e-83 313.2 382 53.4
Gorai.010G042400 Gossypium raimondii HOM05D003923 ORTHO05D004553 4.5e-83 312.4 367 58.6
Duzib041G0577 Durio zibethinus HOM05D003923 ORTHO05D004553 7.6e-83 311.6 363 59.5
Hma1.2p1_0120F.1_g057290 Hydrangea macrophylla HOM05D003923 ORTHO05D004553 1.7e-82 310.5 358 62.6
Nn5g29082 Nelumbo nucifera HOM05D003923 ORTHO05D004553 2.2e-82 310.1 353 56.9
Potri.002G094700 Populus trichocarpa HOM05D003923 ORTHO05D004553 4.9e-82 308.9 358 57.0
TPR.G35206 Trifolium pratense HOM05D003923 ORTHO05D004553 1.4e-81 307.4 367 62.4
Rhsim06G0083500 Rhododendron simsii HOM05D003923 ORTHO05D004553 2.5e-81 306.6 364 55.2
Peaxi162Scf00041g01015 Petunia axillaris HOM05D003923 ORTHO05D004553 4.2e-81 305.8 366 54.4
Medtr3g074210 Medicago truncatula HOM05D003923 ORTHO05D004553 2.7e-80 303.1 376 55.3
Cc10_g07380 Coffea canephora HOM05D003923 ORTHO05D004553 7.9e-80 301.6 377 59.4
TAR628G1119 Trochodendron aralioides HOM05D003923 ORTHO05D004553 1.3e-79 300.8 353 61.5
TWI12G0076 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 2.3e-79 300.1 366 59.0
Ciclev10001646m.g Citrus clementina HOM05D003923 ORTHO05D004553 3.0e-79 299.7 368 59.5
Gohir.A06G036700 Gossypium hirsutum HOM05D003923 ORTHO05D004553 3.0e-79 299.7 366 54.6
Oeu061492.1 Olea europaea HOM05D003923 ORTHO05D004553 3.9e-79 299.3 369 59.1
CSS0001866 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 4.3e-78 295.8 359 56.5
COL.COLO4_16427 Corchorus olitorius HOM05D003923 ORTHO05D004553 1.6e-77 293.9 348 58.6
Oeu024542.1 Olea europaea HOM05D003923 ORTHO05D004553 1.6e-77 293.9 357 56.3
Lj1g0006284 Lotus japonicus HOM05D003923 ORTHO05D004553 2.4e-76 290.0 367 52.6
Psat5g138360 Pisum sativum HOM05D003923 ORTHO05D004553 3.1e-76 289.7 371 54.7
MSTRG.24466 Avicennia marina HOM05D003923 ORTHO05D004553 5.3e-76 288.9 361 59.3
Lalb_Chr11g0065491 Lupinus albus HOM05D003923 ORTHO05D004553 5.3e-76 288.9 375 51.5
CAN.G1261.5 Capsicum annuum HOM05D003923 ORTHO05D004553 1.2e-75 287.7 362 56.9
Glyma.06G104700 Glycine max HOM05D003923 ORTHO05D004553 2.0e-75 287.0 369 60.4
BcaB03g15981 Brassica carinata HOM05D003923 ORTHO05D004553 5.0e-74 282.3 354 50.3
Ca_15243_v3 Cicer arietinum L. HOM05D003923 ORTHO05D004553 1.9e-73 280.4 373 58.2
THA.LOC104809709 Tarenaya hassleriana HOM05D003923 ORTHO05D004553 7.1e-73 278.5 375 49.9
BcaC08g47387 Brassica carinata HOM05D003923 ORTHO05D004553 1.6e-72 277.3 360 52.2
C06p52080 Brassica napus HOM05D003923 ORTHO05D004553 1.6e-72 277.3 360 52.2
BolC6t40231H Brassica oleracea HOM05D003923 ORTHO05D004553 1.6e-72 277.3 360 52.2
Glyma.04G103500 Glycine max HOM05D003923 ORTHO05D004553 1.8e-71 273.9 349 57.3
Eucgr.F02437 Eucalyptus grandis HOM05D003923 ORTHO05D004553 8.7e-71 271.6 350 50.3
PSO447G0218 Papaver somniferum HOM05D003923 ORTHO05D004553 1.6e-69 267.3 375 52.3
Sabra02G0074700 Salix brachista HOM05D003923 ORTHO05D004553 3.7e-69 266.2 359 49.6
Solyc12g056990.1 Solanum lycopersicum HOM05D003923 ORTHO05D004553 8.2e-69 265.0 358 52.8
EL10Ac1g01249 Beta vulgaris HOM05D003923 ORTHO05D004553 1.8e-68 263.8 367 46.3
vmacro21241 Vaccinium macrocarpon HOM05D003923 ORTHO05D004553 2.4e-68 263.5 357 60.5
Aqoxy5G01999 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 6.9e-68 261.9 368 46.2
Sopen04g029130 Solanum pennellii HOM05D003923 ORTHO05D004553 6.9e-68 261.9 360 57.2
PSO210G6507 Papaver somniferum HOM05D003923 ORTHO05D004553 1.5e-67 260.8 375 53.6
PGSC0003DMG400008539 Solanum tuberosum HOM05D003923 ORTHO05D004553 2.6e-67 260.0 359 53.2
Manes.02G153800 Manihot esculenta HOM05D003923 ORTHO05D004553 4.5e-67 259.2 353 53.5
HanXRQChr15g0491381 Helianthus annuus HOM05D003923 ORTHO05D004553 5.9e-67 258.8 369 52.0
Lsat_1_v5_gn_9_43840 Lactuca sativa HOM05D003923 ORTHO05D004553 1.0e-66 258.1 357 53.2
VMungo1309G2192 Vigna mungo HOM05D003923 ORTHO05D004553 1.0e-66 258.1 366 58.5
AL2G38420 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 1.3e-66 257.7 360 54.2
CARHR071570 Cardamine hirsuta HOM05D003923 ORTHO05D004553 2.2e-66 256.9 359 58.2
ECA232G2894 Erigeron canadensis HOM05D003923 ORTHO05D004553 2.9e-66 256.5 380 45.5
Nitab4.5_0000421g0080 Nicotiana tabacum HOM05D003923 ORTHO05D004553 2.9e-66 256.5 357 50.7
Actinidia30763 Actinidia chinensis HOM05D003923 ORTHO05D004553 5.0e-66 255.8 351 49.6
Aa31LG4G8160 Aethionema arabicum HOM05D003923 ORTHO05D004553 8.5e-66 255.0 354 49.7
MBI02_g08739_MAGBIO Magnolia biondii HOM05D003923 ORTHO05D004553 1.1e-65 254.6 361 51.0
BcaB05g25102 Brassica carinata HOM05D003923 ORTHO05D004553 1.4e-65 254.2 350 47.4
Sp5g33250 Schrenkiella parvula HOM05D003923 ORTHO05D004553 1.6e-64 250.8 367 53.4
Peaxi162Scf00160g00147 Petunia axillaris HOM05D003923 ORTHO05D004553 2.7e-64 250.0 360 50.6
AT1G78110 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 4.6e-64 249.2 359 55.2
PGSC0003DMG400009479 Solanum tuberosum HOM05D003923 ORTHO05D004553 4.6e-64 249.2 362 50.3
Nitab4.5_0000675g0060 Nicotiana tabacum HOM05D003923 ORTHO05D004553 1.0e-63 248.1 360 52.2
Nitab4.5_0002243g0010 Nicotiana tabacum HOM05D003923 ORTHO05D004553 1.4e-63 247.7 325 49.8
Carub.0002s2500 Capsella rubella HOM05D003923 ORTHO05D004553 1.8e-63 247.3 360 53.1
Sc23g0000110 Simmondsia chinensis HOM05D003923 ORTHO05D004553 1.8e-63 247.3 372 47.8
BraA07t31856Z Brassica rapa HOM05D003923 ORTHO05D004553 2.3e-63 246.9 360 48.1
ClCG11G015440 Citrullus lanatus HOM05D003923 ORTHO05D004553 5.1e-63 245.7 353 49.9
BcaB02g07147 Brassica carinata HOM05D003923 ORTHO05D004553 2.5e-62 243.4 350 50.3
A07p43360 Brassica napus HOM05D003923 ORTHO05D004553 4.3e-62 242.7 360 49.2
Thhalv10018798m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 4.3e-62 242.7 370 55.9
A02p22020 Brassica napus HOM05D003923 ORTHO05D004553 5.7e-62 242.3 353 47.6
MELO3C010430.2 Cucumis melo HOM05D003923 ORTHO05D004553 2.8e-61 240.0 345 47.8
ECA246G1087 Erigeron canadensis HOM05D003923 ORTHO05D004553 4.8e-61 239.2 352 45.7
BraA02t07205Z Brassica rapa HOM05D003923 ORTHO05D004553 6.3e-61 238.8 353 47.6
A07p27700 Brassica napus HOM05D003923 ORTHO05D004553 8.2e-61 238.4 378 53.7
MSTRG.22149 Avicennia marina HOM05D003923 ORTHO05D004553 1.1e-60 238.0 362 53.0
BcaC03g15795 Brassica carinata HOM05D003923 ORTHO05D004553 1.1e-60 238.0 350 47.4
C02p35410 Brassica napus HOM05D003923 ORTHO05D004553 1.1e-60 238.0 357 46.5
PGR042G1650 Punica granatum HOM05D003923 ORTHO05D004553 1.1e-60 238.0 361 45.2
BraA07t30411Z Brassica rapa HOM05D003923 ORTHO05D004553 2.4e-60 236.9 380 52.6
BolC2t09553H Brassica oleracea HOM05D003923 ORTHO05D004553 5.3e-60 235.7 350 47.1
CsaV3_4G028650 Cucumis sativus L. HOM05D003923 ORTHO05D004553 9.1e-60 235.0 345 51.9
Nitab4.5_0001992g0040 Nicotiana tabacum HOM05D003923 ORTHO05D004553 1.2e-59 234.6 352 54.0
Duzib116G0286 Durio zibethinus HOM05D003923 ORTHO05D004553 1.3e-58 231.1 287 54.4
Migut.N02906 Erythranthe guttata HOM05D003923 ORTHO05D004553 1.3e-58 231.1 368 46.7
Sed0005628 Sechium edule HOM05D003923 ORTHO05D004553 6.5e-58 228.8 376 42.0
Eucgr.F00301 Eucalyptus grandis HOM05D003923 ORTHO05D004553 1.4e-57 227.6 281 51.6
Sopen00g003260 Solanum pennellii HOM05D003923 ORTHO05D004553 2.5e-57 226.9 317 51.4
BcaC08g45438 Brassica carinata HOM05D003923 ORTHO05D004553 4.2e-57 226.1 378 52.4
C06p30680 Brassica napus HOM05D003923 ORTHO05D004553 4.2e-57 226.1 378 52.4
BolC6t38232H Brassica oleracea HOM05D003923 ORTHO05D004553 4.2e-57 226.1 378 52.4
Solyc04g072940.4 Solanum lycopersicum HOM05D003923 ORTHO05D004553 3.6e-56 223.0 339 50.7
AT1G22230 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 5.1e-55 219.2 359 45.4
Ah.05g170190 Amaranthus hybridus HOM05D003923 ORTHO05D004553 1.5e-54 217.6 364 46.2
AL1G35680 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 1.5e-54 217.6 366 47.0
Sp1g19740 Schrenkiella parvula HOM05D003923 ORTHO05D004553 5.7e-54 215.7 368 42.9
Atru.chr13.1213 Acer truncatum HOM05D003923 ORTHO05D004553 1.3e-53 214.5 293 63.5
Lalb_Chr17g0344141 Lupinus albus HOM05D003923 ORTHO05D004553 1.7e-53 214.2 357 45.1
A09p42540 Brassica napus HOM05D003923 ORTHO05D004553 4.8e-53 212.6 359 45.1
BraA09t39730Z Brassica rapa HOM05D003923 ORTHO05D004553 1.1e-52 211.5 359 45.1
CARHR022580 Cardamine hirsuta HOM05D003923 ORTHO05D004553 1.1e-52 211.5 363 44.4
Lalb_Chr04g0253191 Lupinus albus HOM05D003923 ORTHO05D004553 1.8e-52 210.7 339 42.8
Carub.0001s2178 Capsella rubella HOM05D003923 ORTHO05D004553 5.9e-51 205.7 355 48.7
MELO3C011359.2 Cucumis melo HOM05D003923 ORTHO05D004553 1.0e-50 204.9 365 47.4
CsaV3_2G024220 Cucumis sativus L. HOM05D003923 ORTHO05D004553 2.9e-50 203.4 367 46.0
BcaB07g32245 Brassica carinata HOM05D003923 ORTHO05D004553 1.9e-49 200.7 361 45.4
Migut.O00455 Erythranthe guttata HOM05D003923 ORTHO05D004553 1.9e-49 200.7 173 63.0
ClCG08G011040 Citrullus lanatus HOM05D003923 ORTHO05D004553 5.5e-49 199.1 366 48.4
BcaB07g32243 Brassica carinata HOM05D003923 ORTHO05D004553 7.2e-49 198.7 358 43.3
BcaC05g26150 Brassica carinata HOM05D003923 ORTHO05D004553 7.2e-49 198.7 358 43.3
C05p21350 Brassica napus HOM05D003923 ORTHO05D004553 7.2e-49 198.7 358 43.3
BolC5t30833H Brassica oleracea HOM05D003923 ORTHO05D004553 9.4e-49 198.4 357 43.7
unitig_21.g20601 Utricularia gibba HOM05D003923 ORTHO05D004553 4.7e-48 196.1 358 39.7
Aqoxy6G00599 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 4.0e-47 193.0 351 39.3
Thhalv10008264m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 1.5e-46 191.0 351 42.5
Dinv13027 Davidia involucrata HOM05D003923 ORTHO05D004553 3.3e-46 189.9 240 52.1
A07p14630 Brassica napus HOM05D003923 ORTHO05D004553 5.3e-44 182.6 356 37.9
ATR0564G364 Amborella trichopoda HOM05D003923 ORTHO05D004553 1.3e-42 177.9 360 38.3
BraA07t29207Z Brassica rapa HOM05D003923 ORTHO05D004553 2.9e-42 176.8 359 37.3
HanXRQChr05g0162921 Helianthus annuus HOM05D003923 ORTHO05D004553 6.5e-42 175.6 372 42.7
Zm00001eb311240 Zea mays HOM05D003923 ORTHO05D004553 9.4e-41 171.8 360 38.1
Sed0003612 Sechium edule HOM05D003923 ORTHO05D004553 2.1e-40 170.6 308 39.6
BcaC06g34942 Brassica carinata HOM05D003923 ORTHO05D004553 2.3e-39 167.2 356 35.7
CDE12G0356 Ceratophyllum demersum HOM05D003923 ORTHO05D004553 2.6e-38 163.7 219 42.9
PSO781G0128 Papaver somniferum HOM05D003923 ORTHO05D004553 9.8e-38 161.8 412 32.5
Zm00001eb098670 Zea mays HOM05D003923 ORTHO05D004553 9.8e-38 161.8 372 35.8
SalBow7G0529 Salvia bowleyana HOM05D003923 ORTHO05D004553 2.8e-37 160.2 326 46.9
C07p21520 Brassica napus HOM05D003923 ORTHO05D004553 2.4e-36 157.1 356 34.3
AUR62027732 Chenopodium quinoa HOM05D003923 ORTHO05D004553 2.4e-36 157.1 203 44.8
PSO541G2428 Papaver somniferum HOM05D003923 ORTHO05D004553 1.6e-35 154.5 428 35.3
unitig_744.g24093 Utricularia gibba HOM05D003923 ORTHO05D004553 1.6e-35 154.5 355 34.9
Aa31LG7G6170 Aethionema arabicum HOM05D003923 ORTHO05D004553 1.7e-34 151.0 353 34.3
Zm00001eb255200 Zea mays HOM05D003923 ORTHO05D004553 1.7e-34 151.0 362 37.0
Zm00001eb194180 Zea mays HOM05D003923 ORTHO05D004553 4.7e-32 142.9 363 38.3
SEGI_41423 Sequoiadendron giganteum HOM05D003923 ORTHO05D004553 1.0e-31 141.7 335 34.3
HPP92_002331 Vanilla planifolia HOM05D003923 ORTHO05D004553 5.7e-30 136.0 361 40.2
Sed0022190 Sechium edule HOM05D003923 ORTHO05D004553 2.4e-28 130.6 271 36.9
Os09g0370000 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 7.7e-27 125.6 366 47.3
ATR0122G028 Amborella trichopoda HOM05D003923 ORTHO05D004553 6.6e-26 122.5 341 33.4
Os02g0753400 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 4.7e-24 116.3 354 44.4
BolC7t42678H Brassica oleracea HOM05D003923 ORTHO05D004553 1.1e-20 105.1 182 39.0
GSVIVG01009013001 Vitis vinifera HOM05D003923 ORTHO05D004553 3.9e-18 96.7 206 35.4
A07p43420 Brassica napus HOM05D003923 ORTHO05D004553 2.0e-14 84.3 112 48.2
BcaB03g11901 Brassica carinata HOM05D003923 ORTHO05D004553 2.3e-10 70.9 98 43.9
BcaC07g38451 Brassica carinata HOM05D003923 ORTHO05D004553 4.7e-08 63.2 52 59.6
ATR0153G027 Amborella trichopoda HOM05D003923 ORTHO05D004553 1.8e-07 61.2 176 38.1
unitig_578.g16204 Utricularia gibba HOM05D003923 ORTHO05D004553 1.2e-06 58.5 209 28.2
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 1.5e-06 58.2 297 23.2
ATR0153G003 Amborella trichopoda HOM05D003923 ORTHO05D004553 7.5e-06 55.8 41 58.5


User provided reference genes

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