Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G0672 Cannabis sativa HOM05D005701 ORTHO05D007058 2.3e-110 402.1 192 100.0
Cfa006081 Carpinus fangiana HOM05D005701 ORTHO05D007058 1.6e-82 309.7 188 78.7
MELO3C015871.2 Cucumis melo HOM05D005701 ORTHO05D007058 1.3e-81 306.6 192 75.0
PGR119G1915 Punica granatum HOM05D005701 ORTHO05D007058 1.8e-81 306.2 180 79.4
PGSC0003DMG401020044 Solanum tuberosum HOM05D005701 ORTHO05D007058 2.3e-81 305.8 183 77.0
QL02p002445 Quercus lobata HOM05D005701 ORTHO05D007058 3.0e-81 305.4 183 78.1
CsaV3_7G028500 Cucumis sativus L. HOM05D005701 ORTHO05D007058 3.9e-81 305.1 180 77.8
Nitab4.5_0002093g0100 Nicotiana tabacum HOM05D005701 ORTHO05D007058 1.1e-80 303.5 192 74.0
Potri.002G212400 Populus trichocarpa HOM05D005701 ORTHO05D007058 1.9e-80 302.8 194 74.7
TWI59G0853 Tripterygium wilfordii HOM05D005701 ORTHO05D007058 2.5e-80 302.4 188 76.6
Actinidia24310 Actinidia chinensis HOM05D005701 ORTHO05D007058 5.6e-80 301.2 186 76.9
Dinv11265 Davidia involucrata HOM05D005701 ORTHO05D007058 5.6e-80 301.2 192 75.0
Ciclev10022400m.g Citrus clementina HOM05D005701 ORTHO05D007058 7.4e-80 300.8 188 75.0
Sed0003723 Sechium edule HOM05D005701 ORTHO05D007058 7.4e-80 300.8 189 75.7
Oeu006228.1 Olea europaea HOM05D005701 ORTHO05D007058 1.6e-79 299.7 192 75.0
Sc24g0004070 Simmondsia chinensis HOM05D005701 ORTHO05D007058 2.1e-79 299.3 193 73.6
Solyc06g084390.3 Solanum lycopersicum HOM05D005701 ORTHO05D007058 3.7e-79 298.5 183 74.3
Sopen06g035780 Solanum pennellii HOM05D005701 ORTHO05D007058 3.7e-79 298.5 183 74.3
ClCG09G006770 Citrullus lanatus HOM05D005701 ORTHO05D007058 6.2e-79 297.7 179 77.7
GSVIVG01011062001 Vitis vinifera HOM05D005701 ORTHO05D007058 1.4e-78 296.6 185 76.2
Gohir.A12G006700 Gossypium hirsutum HOM05D005701 ORTHO05D007058 1.8e-78 296.2 189 75.1
CiPaw.08G102100 Carya illinoinensis HOM05D005701 ORTHO05D007058 3.1e-78 295.4 187 73.3
MSTRG.17433 Avicennia marina HOM05D005701 ORTHO05D007058 5.3e-78 294.7 190 72.1
Haze_04768 Corylus avellana HOM05D005701 ORTHO05D007058 5.3e-78 294.7 210 70.5
MD03G1271500 Malus domestica HOM05D005701 ORTHO05D007058 6.9e-78 294.3 189 73.5
FAN20G1753 Fragaria x ananassa HOM05D005701 ORTHO05D007058 9.0e-78 293.9 189 72.0
Lsat_1_v5_gn_5_187740 Lactuca sativa HOM05D005701 ORTHO05D007058 1.2e-77 293.5 186 71.5
Duzib138G1703 Durio zibethinus HOM05D005701 ORTHO05D007058 2.0e-77 292.7 189 74.6
FAN27G2557 Fragaria x ananassa HOM05D005701 ORTHO05D007058 2.6e-77 292.4 186 72.6
FAN15G1986 Fragaria x ananassa HOM05D005701 ORTHO05D007058 3.4e-77 292.0 188 72.9
RcHm_v2.0_Chr6g0291961 Rosa chinensis HOM05D005701 ORTHO05D007058 3.4e-77 292.0 191 72.3
Rhsim13G0021200 Rhododendron simsii HOM05D005701 ORTHO05D007058 4.5e-77 291.6 173 79.2
ECA248G0764 Erigeron canadensis HOM05D005701 ORTHO05D007058 7.6e-77 290.8 180 73.9
Eucgr.H01544 Eucalyptus grandis HOM05D005701 ORTHO05D007058 1.3e-76 290.0 177 76.8
Thecc.01G285600 Theobroma cacao HOM05D005701 ORTHO05D007058 1.3e-76 290.0 187 73.8
Lalb_Chr06g0163181 Lupinus albus HOM05D005701 ORTHO05D007058 1.7e-76 289.7 188 73.4
vmacro02538 Vaccinium macrocarpon HOM05D005701 ORTHO05D007058 2.2e-76 289.3 186 72.0
FAN24G1361 Fragaria x ananassa HOM05D005701 ORTHO05D007058 2.9e-76 288.9 186 71.5
SalBow6G2366 Salvia bowleyana HOM05D005701 ORTHO05D007058 3.8e-76 288.5 189 67.7
CSS0017429 Camellia sinensis var. sinensis HOM05D005701 ORTHO05D007058 1.1e-75 287.0 186 71.0
PSO170G3928 Papaver somniferum HOM05D005701 ORTHO05D007058 1.9e-75 286.2 188 72.9
PSO302G0130 Papaver somniferum HOM05D005701 ORTHO05D007058 3.2e-75 285.4 188 72.3
Psat6g169920 Pisum sativum HOM05D005701 ORTHO05D007058 3.2e-75 285.4 197 68.5
Glyma.02G150100 Glycine max HOM05D005701 ORTHO05D007058 4.2e-75 285.0 170 75.9
Aqoxy2G03192 Aquilegia oxysepala HOM05D005701 ORTHO05D007058 1.6e-74 283.1 185 70.3
Migut.N02175 Erythranthe guttata HOM05D005701 ORTHO05D007058 2.1e-74 282.7 185 69.7
Peaxi162Scf00783g00418 Petunia axillaris HOM05D005701 ORTHO05D007058 2.7e-74 282.3 159 78.0
Nitab4.5_0010603g0020 Nicotiana tabacum HOM05D005701 ORTHO05D007058 3.5e-74 282.0 164 77.4
Manes.05G072000 Manihot esculenta HOM05D005701 ORTHO05D007058 4.6e-74 281.6 190 72.1
Prupe.8G247700 Prunus persica HOM05D005701 ORTHO05D007058 4.6e-74 281.6 193 69.4
Migut.N02139 Erythranthe guttata HOM05D005701 ORTHO05D007058 6.0e-74 281.2 191 67.5
EL10Ac7g17192 Beta vulgaris HOM05D005701 ORTHO05D007058 1.8e-73 279.6 189 67.7
TPR.G26671 Trifolium pratense HOM05D005701 ORTHO05D007058 2.3e-73 279.3 195 69.7
Cc01_g05150 Coffea canephora HOM05D005701 ORTHO05D007058 3.0e-73 278.9 160 78.1
MD11G1292100 Malus domestica HOM05D005701 ORTHO05D007058 3.0e-73 278.9 189 72.0
THA.LOC104826003 Tarenaya hassleriana HOM05D005701 ORTHO05D007058 3.0e-73 278.9 189 70.4
CAN.G1682.11 Capsicum annuum HOM05D005701 ORTHO05D007058 3.9e-73 278.5 176 73.3
Lj5g0014836 Lotus japonicus HOM05D005701 ORTHO05D007058 3.9e-73 278.5 188 69.1
Ah.08g212880 Amaranthus hybridus HOM05D005701 ORTHO05D007058 6.7e-73 277.7 189 70.4
Nn1g02106 Nelumbo nucifera HOM05D005701 ORTHO05D007058 1.1e-72 276.9 182 72.5
Medtr1g089810 Medicago truncatula HOM05D005701 ORTHO05D007058 1.9e-72 276.2 188 69.1
HanXRQChr14g0430981 Helianthus annuus HOM05D005701 ORTHO05D007058 3.3e-72 275.4 186 69.4
Phvul.007G168600 Phaseolus vulgaris HOM05D005701 ORTHO05D007058 3.3e-72 275.4 188 69.1
SGA_v2.0_scaffold1G00437 Striga asiatica HOM05D005701 ORTHO05D007058 4.3e-72 275.0 192 65.6
Hund06566 Selenicereus undatus HOM05D005701 ORTHO05D007058 5.6e-72 274.6 188 71.3
ECA248G1579 Erigeron canadensis HOM05D005701 ORTHO05D007058 1.6e-71 273.1 198 66.7
THA.LOC104801212 Tarenaya hassleriana HOM05D005701 ORTHO05D007058 1.6e-71 273.1 174 73.0
Lj2A1180T63 Lonicera japonica HOM05D005701 ORTHO05D007058 3.7e-71 271.9 186 71.0
Ca_10397_v3 Cicer arietinum L. HOM05D005701 ORTHO05D007058 4.8e-71 271.6 187 67.4
TAR365G0921 Trochodendron aralioides HOM05D005701 ORTHO05D007058 1.1e-70 270.4 160 76.2
Hma1.2p1_0628F.1_g191820 Hydrangea macrophylla HOM05D005701 ORTHO05D007058 1.8e-70 269.6 160 80.0
Migut.D00251 Erythranthe guttata HOM05D005701 ORTHO05D007058 6.9e-70 267.7 189 65.1
Thecc.01G285700 Theobroma cacao HOM05D005701 ORTHO05D007058 2.6e-69 265.8 188 69.1
unitig_8.g3319 Utricularia gibba HOM05D005701 ORTHO05D007058 2.6e-69 265.8 190 65.3
AT4G02980 Arabidopsis thaliana HOM05D005701 ORTHO05D007058 6.5e-68 261.2 190 67.9
HPP92_010620 Vanilla planifolia HOM05D005701 ORTHO05D007058 1.1e-67 260.4 192 68.2
AL6G49950 Arabidopsis lyrata HOM05D005701 ORTHO05D007058 1.9e-67 259.6 176 71.0
Carub.0006s3407 Capsella rubella HOM05D005701 ORTHO05D007058 3.2e-67 258.8 176 71.0
Thhalv10028980m.g Eutrema salsugineum HOM05D005701 ORTHO05D007058 2.7e-66 255.8 168 72.6
Aa31LG5G2530 Aethionema arabicum HOM05D005701 ORTHO05D007058 3.5e-66 255.4 186 64.0
A09p02300 Brassica napus HOM05D005701 ORTHO05D007058 4.6e-66 255.0 183 69.4
BraA09t35879Z Brassica rapa HOM05D005701 ORTHO05D007058 4.6e-66 255.0 183 69.4
AUR62036778 Chenopodium quinoa HOM05D005701 ORTHO05D007058 1.0e-65 253.8 235 57.0
Zm00001eb410800 Zea mays HOM05D005701 ORTHO05D007058 5.1e-65 251.5 185 64.3
Atru.chr5.1332 Acer truncatum HOM05D005701 ORTHO05D007058 6.7e-65 251.1 153 78.4
BolC9t53172H Brassica oleracea HOM05D005701 ORTHO05D007058 8.7e-65 250.8 190 66.8
C09p02410 Brassica napus HOM05D005701 ORTHO05D007058 1.9e-64 249.6 190 66.8
Sp6g03020 Schrenkiella parvula HOM05D005701 ORTHO05D007058 2.5e-64 249.2 183 68.3
BolC3t16031H Brassica oleracea HOM05D005701 ORTHO05D007058 5.7e-64 248.1 183 66.7
BcaB01g02494 Brassica carinata HOM05D005701 ORTHO05D007058 7.4e-64 247.7 186 64.5
BraA03t12248Z Brassica rapa HOM05D005701 ORTHO05D007058 7.4e-64 247.7 177 67.2
CARHR251350 Cardamine hirsuta HOM05D005701 ORTHO05D007058 7.4e-64 247.7 164 72.0
Os12g0529400 Oryza sativa ssp. japonica HOM05D005701 ORTHO05D007058 9.7e-64 247.3 188 62.8
A03p30690 Brassica napus HOM05D005701 ORTHO05D007058 1.6e-63 246.5 183 66.7
BcaC01g06714 Brassica carinata HOM05D005701 ORTHO05D007058 2.2e-63 246.1 183 66.1
C03p37390 Brassica napus HOM05D005701 ORTHO05D007058 2.2e-63 246.1 183 66.1
SalBow3G3506 Salvia bowleyana HOM05D005701 ORTHO05D007058 2.2e-63 246.1 164 67.1
CDE08G1024 Ceratophyllum demersum HOM05D005701 ORTHO05D007058 3.7e-63 245.4 160 69.4
Cc01_g03720 Coffea canephora HOM05D005701 ORTHO05D007058 8.2e-63 244.2 140 75.7
Zm00001eb410760 Zea mays HOM05D005701 ORTHO05D007058 8.2e-63 244.2 191 62.3
Manes.01G211300 Manihot esculenta HOM05D005701 ORTHO05D007058 1.5e-61 240.0 151 74.2
Zm00001eb137840 Zea mays HOM05D005701 ORTHO05D007058 2.2e-60 236.1 160 68.1
Gorai.008G006100 Gossypium raimondii HOM05D005701 ORTHO05D007058 5.5e-59 231.5 155 72.3
TPR.G13316 Trifolium pratense HOM05D005701 ORTHO05D007058 1.0e-57 227.3 238 52.9
Oeu047892.2 Olea europaea HOM05D005701 ORTHO05D007058 1.8e-57 226.5 272 46.7
BcaB01g01993 Brassica carinata HOM05D005701 ORTHO05D007058 1.5e-56 223.4 144 72.9
SGA_v2.0_scaffold172G39038 Striga asiatica HOM05D005701 ORTHO05D007058 4.8e-55 218.4 163 65.6
VMungo0720G2830 Vigna mungo HOM05D005701 ORTHO05D007058 4.8e-55 218.4 144 71.5
MSTRG.12575 Avicennia marina HOM05D005701 ORTHO05D007058 1.0e-52 210.7 189 54.5
Cpa.g.sc9.126 Carica papaya HOM05D005701 ORTHO05D007058 3.8e-52 208.8 134 76.9
Rhsim13G0021400 Rhododendron simsii HOM05D005701 ORTHO05D007058 1.4e-51 206.8 151 65.6
Pp3c4_12750 Physcomitrium patens HOM05D005701 ORTHO05D007058 1.0e-49 200.7 179 55.3
Pp3c4_12660 Physcomitrium patens HOM05D005701 ORTHO05D007058 1.8e-49 199.9 148 62.2
FvH4_2g24150 Fragaria vesca HOM05D005701 ORTHO05D007058 2.0e-48 196.4 127 72.4
Cc00_g05320 Coffea canephora HOM05D005701 ORTHO05D007058 7.4e-48 194.5 171 55.6
SMO164G0245 Selaginella moellendorffii HOM05D005701 ORTHO05D007058 1.7e-47 193.4 154 59.1
CAN.G996.16 Capsicum annuum HOM05D005701 ORTHO05D007058 8.5e-44 181.0 127 66.1
Zm00001eb440220 Zea mays HOM05D005701 ORTHO05D007058 1.8e-41 173.3 138 60.1
MBI19_g33449_MAGBIO Magnolia biondii HOM05D005701 ORTHO05D007058 5.2e-41 171.8 108 71.3
vmacro02539 Vaccinium macrocarpon HOM05D005701 ORTHO05D007058 1.1e-40 170.6 121 66.9
MBI19_g39288_MAGBIO Magnolia biondii HOM05D005701 ORTHO05D007058 2.0e-40 169.9 105 72.4
ATR0626G241 Amborella trichopoda HOM05D005701 ORTHO05D007058 5.7e-40 168.3 131 61.1
QL02p081958 Quercus lobata HOM05D005701 ORTHO05D007058 5.3e-38 161.8 111 69.4
Gohir.D12G006100 Gossypium hirsutum HOM05D005701 ORTHO05D007058 2.2e-36 156.4 117 66.7
CBR_g38020 Chara braunii HOM05D005701 ORTHO05D007058 1.9e-35 153.3 120 55.0
Zm00001eb410780 Zea mays HOM05D005701 ORTHO05D007058 3.2e-35 152.5 142 54.9
AUR62033690 Chenopodium quinoa HOM05D005701 ORTHO05D007058 3.6e-34 149.1 91 72.5
Rhsim13G0021300 Rhododendron simsii HOM05D005701 ORTHO05D007058 1.5e-32 143.7 226 37.6
AagrBONN_evm.TU.Sc2ySwM_117.1970 Anthoceros agrestis HOM05D005701 ORTHO05D007058 3.3e-32 142.5 137 51.8
Ah.04g164000 Amaranthus hybridus HOM05D005701 ORTHO05D007058 1.7e-31 140.2 91 68.1
Os12g0529300 Oryza sativa ssp. japonica HOM05D005701 ORTHO05D007058 4.1e-30 135.6 86 66.3
CSS0004068 Camellia sinensis var. sinensis HOM05D005701 ORTHO05D007058 4.8e-23 112.1 186 41.4
C09p02610 Brassica napus HOM05D005701 ORTHO05D007058 3.1e-22 109.4 82 64.6
Lsat_1_v5_gn_4_17561 Lactuca sativa HOM05D005701 ORTHO05D007058 1.1e-19 100.9 99 55.6
HPP92_017198 Vanilla planifolia HOM05D005701 ORTHO05D051565 2.5e-19 99.8 190 34.7
Rhsim11G0018300 Rhododendron simsii HOM05D003327 ORTHO05D004535 5.9e-13 78.6 45 75.6


User provided reference genes

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