Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G0653 Cannabis sativa HOM05D003945 ORTHO05D004625 0.0e+00 1708.7 856 100.0
Prupe.1G383600 Prunus persica HOM05D003945 ORTHO05D004625 0.0e+00 1461.8 859 85.1
FvH4_2g40290 Fragaria vesca HOM05D003945 ORTHO05D004625 0.0e+00 1458.4 841 86.4
RcHm_v2.0_Chr6g0300451 Rosa chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1457.6 841 86.3
Ciclev10000250m.g Citrus clementina HOM05D003945 ORTHO05D004625 0.0e+00 1456.0 858 85.1
Potri.002G133300 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1456.0 846 84.8
FAN27G0143 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1452.2 841 86.2
CsaV3_2G028440 Cucumis sativus L. HOM05D003945 ORTHO05D004625 0.0e+00 1450.6 846 85.2
Cfa018443 Carpinus fangiana HOM05D003945 ORTHO05D004625 0.0e+00 1448.7 858 84.8
Duzib116G0373 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1448.0 859 84.6
FAN20G0651 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1446.4 841 85.9
Duzib093G0983 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1443.7 859 84.5
Thecc.08G022100 Theobroma cacao HOM05D003945 ORTHO05D004625 0.0e+00 1443.7 859 84.6
Manes.05G163500 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1439.1 841 85.1
Potri.014G040800 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1437.2 858 83.9
Sed0019202 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1433.3 846 84.2
GSVIVG01009647001 Vitis vinifera HOM05D003945 ORTHO05D004625 0.0e+00 1433.3 856 83.6
CiPaw.15G072600 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1431.4 860 83.3
Sed0018308 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1422.1 858 83.2
Gorai.009G205100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1419.4 859 82.9
TWI56G0898 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1418.7 842 84.0
Duzib041G0798 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1418.3 857 83.2
Cpa.g.sc64.47 Carica papaya HOM05D003945 ORTHO05D004625 0.0e+00 1417.5 827 85.4
Haze_17624 Corylus avellana HOM05D003945 ORTHO05D004625 0.0e+00 1416.4 824 86.2
QL02p007358 Quercus lobata HOM05D003945 ORTHO05D004625 0.0e+00 1415.2 860 82.9
Sabra02G0104100 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1415.2 859 82.4
Gohir.A06G012000 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1412.9 859 82.5
Gorai.010G012200 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1412.5 859 82.5
FAN15G1095 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1412.1 830 85.5
Gohir.D05G199800 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1412.1 859 82.7
Gohir.D06G009400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1412.1 859 82.5
CiPaw.16G054000 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1408.3 868 82.0
Psat5g018920 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1407.9 857 82.3
Glyma.14G077200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1407.5 858 82.3
Glyma.06G034400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1406.0 857 82.6
MD08G1036300 Malus domestica HOM05D003945 ORTHO05D004625 0.0e+00 1405.2 821 85.0
Lj5g0000532 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1401.7 849 83.0
CSS0008782 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 0.0e+00 1398.6 846 82.7
Manes.18G029900 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1398.3 827 84.6
arahy.Tifrunner.gnm1.ann1.6F7CQG Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1397.1 838 83.5
Lalb_Chr24g0399061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1394.0 857 81.9
Sabra14G0029800 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1394.0 900 78.9
Dinv39382 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1392.5 892 79.0
Glyma.04G034200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1390.6 857 81.7
Gorai.009G274100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1389.0 849 82.4
Gohir.D05G262200 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1388.2 849 82.4
Cc10_g03360 Coffea canephora HOM05D003945 ORTHO05D004625 0.0e+00 1385.5 844 82.7
Medtr3g111630 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1384.8 841 82.9
Phvul.009G055900 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1382.1 855 81.6
Lj1g0024333 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1378.2 848 81.7
TWI12G1285 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1375.5 839 82.6
AUR62033857 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1374.4 847 80.3
TPR.G12378 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1373.2 859 81.1
Lalb_Chr22g0355401 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1372.8 858 80.7
Nn5g29493 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1372.5 850 80.5
Gohir.A05G260400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1371.3 848 81.7
Lj4A44G44 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1369.4 811 83.8
PGR031G2694 Punica granatum HOM05D003945 ORTHO05D004625 0.0e+00 1368.2 836 82.8
VMungo0647G1838 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1367.8 831 82.7
Actinidia22566 Actinidia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1367.1 846 81.0
TAR381G0557 Trochodendron aralioides HOM05D003945 ORTHO05D004625 0.0e+00 1367.1 820 83.3
arahy.Tifrunner.gnm1.ann1.SKM2GN Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1366.3 873 76.1
Lalb_Chr14g0369061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1365.5 857 80.9
Aqoxy6G01012 Aquilegia oxysepala HOM05D003945 ORTHO05D004625 0.0e+00 1364.0 823 82.4
VMungo1309G1712 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1362.8 854 80.7
THA.LOC104809128 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1361.3 841 80.7
AUR62041666 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1360.9 868 78.5
THA.LOC104806880 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1359.0 849 80.8
MBI16_g13147_MAGBIO Magnolia biondii HOM05D003945 ORTHO05D004625 0.0e+00 1346.3 836 79.8
PSO541G5148 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1343.9 844 80.2
Psat6g032680 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1343.2 852 80.2
PSO675G7084 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1342.8 842 80.0
Eucgr.A00488 Eucalyptus grandis HOM05D003945 ORTHO05D004625 0.0e+00 1342.0 819 82.5
EL10Ac1g01765 Beta vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1340.5 820 80.4
PGSC0003DMG400016879 Solanum tuberosum HOM05D003945 ORTHO05D004625 0.0e+00 1339.7 839 80.0
Thhalv10022547m.g Eutrema salsugineum HOM05D003945 ORTHO05D004625 0.0e+00 1335.5 840 79.4
Carub.0008s0641 Capsella rubella HOM05D003945 ORTHO05D004625 0.0e+00 1335.1 846 79.3
Aa31LG9G12670 Aethionema arabicum HOM05D003945 ORTHO05D004625 0.0e+00 1334.3 848 78.8
MELO3C010920.2 Cucumis melo HOM05D003945 ORTHO05D004625 0.0e+00 1329.3 879 76.6
Ah.11g043210 Amaranthus hybridus HOM05D003945 ORTHO05D004625 0.0e+00 1328.9 841 78.4
vmacro21611 Vaccinium macrocarpon HOM05D003945 ORTHO05D004625 0.0e+00 1327.8 839 80.6
CARHR181510 Cardamine hirsuta HOM05D003945 ORTHO05D004625 0.0e+00 1324.3 840 78.7
Nn1g05109 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1323.1 843 77.9
CAN.G371.130 Capsicum annuum HOM05D003945 ORTHO05D004625 0.0e+00 1322.4 833 79.7
SalBow8G1011 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1321.2 844 79.7
Atru.chr13.549 Acer truncatum HOM05D003945 ORTHO05D004625 0.0e+00 1320.8 884 76.8
Sopen04g033470 Solanum pennellii HOM05D003945 ORTHO05D004625 0.0e+00 1320.1 839 79.4
DCAR_012756 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1319.7 825 79.6
Solyc04g079900.3 Solanum lycopersicum HOM05D003945 ORTHO05D004625 0.0e+00 1315.1 839 79.1
AT5G42620 Arabidopsis thaliana HOM05D003945 ORTHO05D004625 0.0e+00 1313.9 851 77.9
BcaC02g10772 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1313.5 844 78.7
Oeu009604.1 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1313.5 876 76.3
AL8G18650 Arabidopsis lyrata HOM05D003945 ORTHO05D004625 0.0e+00 1313.1 849 78.0
Sp2g07000 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1312.7 843 78.3
SpUn0022_0010 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1312.7 843 78.3
SpUn0026_0070 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1312.7 843 78.3
SpUn0029_0030 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1312.7 843 78.3
BcaC06g31752 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1312.4 835 79.5
C04p25260 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1311.6 840 78.8
BolC4t24032H Brassica oleracea HOM05D003945 ORTHO05D004625 0.0e+00 1311.6 840 78.8
Lsat_1_v5_gn_1_18561 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1310.8 852 77.8
ATR0733G077 Amborella trichopoda HOM05D003945 ORTHO05D004625 0.0e+00 1310.4 831 79.3
DCAR_019505 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1305.0 823 79.0
Dinv36042 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1304.3 782 83.9
Nitab4.5_0000110g0200 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1298.5 817 79.3
MSTRG.24306 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1295.8 841 78.1
Gohir.A05G196700 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1294.3 859 76.8
HanXRQChr00c0117g0571731 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1294.3 819 80.3
BraA06t27697Z Brassica rapa HOM05D003945 ORTHO05D004625 0.0e+00 1293.1 834 79.0
A06p48280 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1292.7 834 79.0
Nitab4.5_0003588g0030 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1291.2 831 78.3
Peaxi162Scf00057g01112 Petunia axillaris HOM05D003945 ORTHO05D004625 0.0e+00 1289.6 836 78.6
MSTRG.1299 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1286.6 812 78.9
CDE07G1908 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1284.2 830 77.2
CDE04G0514 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1282.3 830 77.3
HanXRQChr04g0104741 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1281.9 841 77.5
Glyma.17G248400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1280.4 778 82.9
Hund17646 Selenicereus undatus HOM05D003945 ORTHO05D004625 0.0e+00 1272.3 808 78.2
Os03g0731500 Oryza sativa ssp. japonica HOM05D003945 ORTHO05D004625 0.0e+00 1268.8 820 78.3
ECA247G1056 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1266.9 819 78.6
Zm00001eb056220 Zea mays HOM05D003945 ORTHO05D004625 0.0e+00 1266.5 819 77.8
Ca_13337_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1262.3 849 76.6
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1259.2 845 71.6
HanXRQChr09g0268441 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1256.5 817 77.7
Medtr1g021950 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1255.0 824 76.9
ECA232G0159 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1254.2 816 79.3
Lj4C783T17 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1252.7 882 73.8
Migut.C00687 Erythranthe guttata HOM05D003945 ORTHO05D004625 0.0e+00 1241.9 843 75.7
Phvul.001G016500 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1241.5 703 87.2
Lsat_1_v5_gn_4_119740 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1235.3 825 76.8
Ca_15527_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1226.8 832 77.0
Sc02g0006540 Simmondsia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1220.7 758 79.8
SalBow8G4281 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1216.4 841 75.0
SEGI_23274 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1215.3 795 76.7
SGA_v2.0_scaffold24G10266 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1200.3 905 69.0
Mapoly0001s0355 Marchantia polymorpha HOM05D003945 ORTHO05D004625 0.0e+00 1188.3 820 72.2
SEGI_40605 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1182.2 832 72.7
TPR.G15756 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1178.7 773 75.5
Pp3c15_10300 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1159.4 810 72.6
Pp3c9_8900 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1146.7 803 72.5
Rhsim06G0036600 Rhododendron simsii HOM05D003945 ORTHO05D004625 0.0e+00 1140.2 733 79.9
Oeu019083.2 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1083.2 834 69.3
CSS0002441 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 1.7e-293 1012.7 599 80.8
TAR625G1327 Trochodendron aralioides HOM05D003945 ORTHO05D004625 6.7e-282 974.2 843 63.6
AagrBONN_evm.TU.Sc2ySwM_228.1369 Anthoceros agrestis HOM05D003945 ORTHO05D004625 1.3e-277 959.9 608 72.9
SHI08218 Sapria himalayana HOM05D003945 ORTHO05D004625 1.3e-272 943.3 606 75.6
ClCG08G015350 Citrullus lanatus HOM05D003945 ORTHO05D004625 9.0e-271 937.2 543 87.1
COL.COLO4_26375 Corchorus olitorius HOM05D003945 ORTHO05D004625 3.6e-267 925.2 533 83.9
TAR625G0556 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.2e-190 671.0 709 54.6
unitig_899.g15618 Utricularia gibba HOM05D003945 ORTHO05D004625 1.3e-149 534.6 441 61.0
Actinidia15303 Actinidia chinensis HOM05D003945 ORTHO05D004625 5.7e-148 529.3 330 77.9
Actinidia15302 Actinidia chinensis HOM05D003945 ORTHO05D004625 7.9e-142 508.8 354 78.2
unitig_899.g15619 Utricularia gibba HOM05D003945 ORTHO05D004625 5.9e-113 412.9 317 72.6
TAR625G0675 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.6e-102 378.3 398 54.8
HanXRQChr02g0037151 Helianthus annuus HOM05D003945 ORTHO05D004625 2.1e-102 377.9 265 71.3
TAR625G1534 Trochodendron aralioides HOM05D003945 ORTHO05D004625 4.9e-91 340.1 581 46.0
arahy.Tifrunner.gnm1.ann1.URD35Y Arachis hypogaea HOM05D003945 ORTHO05D004625 2.1e-65 255.0 151 80.8
Pp3c1_5980 Physcomitrium patens HOM05D003945 ORTHO05D004625 1.9e-58 231.9 156 75.6
SGA_v2.0_scaffold18G08518 Striga asiatica HOM05D003945 ORTHO05D004625 6.5e-43 180.3 163 56.4
CBR_g2789 Chara braunii HOM05D003945 ORTHO05D004625 6.9e-37 160.2 516 29.1
PRCOL_00006675 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 3.9e-32 144.4 461 27.8
TAR625G0971 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.5e-31 142.5 127 53.5
PRCOL_00003766 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 3.3e-31 141.4 458 27.7
DCAR_031552 Daucus carota HOM05D003945 ORTHO05D004625 1.3e-30 139.4 76 85.5
CiPaw.15G072700 Carya illinoinensis HOM05D003945 ORTHO05D004625 1.4e-26 125.9 68 86.8
Cre01.g001400 Chlamydomonas reinhardtii HOM05D003945 ORTHO05D004625 2.5e-26 125.2 441 26.5
TPR.G27891 Trifolium pratense HOM05D003945 ORTHO05D004625 4.7e-25 120.9 72 75.0
Pp3c1_5940 Physcomitrium patens HOM05D003945 ORTHO05D004625 6.1e-25 120.6 96 65.6
PRCOL_00001495 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 8.8e-24 116.7 476 27.3
CBR_g38919 Chara braunii HOM05D000019 ORTHO05D000353 3.9e-16 91.3 220 32.3
CBR_g32472 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-15 89.7 266 27.8
SGA_v2.0_scaffold210G42079 Striga asiatica HOM05D003945 ORTHO05D004625 1.7e-14 85.9 138 40.6
arahy.Tifrunner.gnm1.ann1.4NEG3Q Arachis hypogaea HOM05D003945 ORTHO05D004625 5.3e-13 80.9 77 50.6
CBR_g37162 Chara braunii HOM05D000019 ORTHO05D000048 5.2e-08 64.3 70 47.1
Lsat_1_v5_gn_5_96440 Lactuca sativa HOM05D003945 ORTHO05D004625 1.3e-06 59.7 38 76.3


User provided reference genes

Program Settings