Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G0630 Cannabis sativa HOM05D005302 ORTHO05D006422 0.0e+00 1080.1 504 100.0
Prupe.1G450300 Prunus persica HOM05D005302 ORTHO05D006422 2.5e-228 795.4 497 75.5
TWI34G0390 Tripterygium wilfordii HOM05D005302 ORTHO05D006422 5.8e-225 784.3 496 74.2
RcHm_v2.0_Chr6g0306001 Rosa chinensis HOM05D005302 ORTHO05D006422 6.4e-224 780.8 510 72.0
Dinv14245 Davidia involucrata HOM05D005302 ORTHO05D006422 1.4e-223 779.6 448 78.6
MD15G1095400 Malus domestica HOM05D005302 ORTHO05D006422 5.4e-223 777.7 494 74.7
CiPaw.08G024700 Carya illinoinensis HOM05D005302 ORTHO05D006422 2.0e-222 775.8 502 73.1
FvH4_2g35770 Fragaria vesca HOM05D005302 ORTHO05D006422 1.3e-221 773.1 509 70.7
Nn2g11666 Nelumbo nucifera HOM05D005302 ORTHO05D006422 1.7e-221 772.7 442 79.4
Manes.16G072000 Manihot esculenta HOM05D005302 ORTHO05D006422 3.9e-221 771.5 500 71.2
Rhsim02G0179400 Rhododendron simsii HOM05D005302 ORTHO05D006422 1.1e-220 770.0 428 80.6
Eucgr.C02909 Eucalyptus grandis HOM05D005302 ORTHO05D006422 1.5e-220 769.6 516 70.9
Actinidia13324 Actinidia chinensis HOM05D005302 ORTHO05D006422 1.9e-220 769.2 450 77.6
TAR624G0168 Trochodendron aralioides HOM05D005302 ORTHO05D006422 2.5e-220 768.8 450 77.8
Haze_21877 Corylus avellana HOM05D005302 ORTHO05D006422 4.3e-220 768.1 563 65.5
PGR044G1364 Punica granatum HOM05D005302 ORTHO05D006422 7.3e-220 767.3 458 75.5
Atru.chr7.2133 Acer truncatum HOM05D005302 ORTHO05D006422 1.2e-219 766.5 455 76.5
Medtr3g110160 Medicago truncatula HOM05D005302 ORTHO05D006422 4.7e-219 764.6 428 79.0
CiPaw.07G205300 Carya illinoinensis HOM05D005302 ORTHO05D006422 1.4e-218 763.1 506 70.9
Gorai.009G050600 Gossypium raimondii HOM05D005302 ORTHO05D006422 1.8e-218 762.7 495 71.3
MD08G1115600 Malus domestica HOM05D005302 ORTHO05D006422 1.8e-218 762.7 493 73.4
Ciclev10008169m.g Citrus clementina HOM05D005302 ORTHO05D006422 2.3e-218 762.3 428 80.1
Hma1.2p1_0393F.1_g143080 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 2.3e-218 762.3 424 79.7
GSVIVG01035645001 Vitis vinifera HOM05D005302 ORTHO05D006422 2.3e-218 762.3 451 77.2
Aqoxy7G03804 Aquilegia oxysepala HOM05D005302 ORTHO05D006422 1.5e-217 759.6 428 80.6
Ca_15604_v3 Cicer arietinum L. HOM05D005302 ORTHO05D006422 2.0e-217 759.2 426 78.4
Gohir.D05G049300 Gossypium hirsutum HOM05D005302 ORTHO05D006422 2.0e-217 759.2 495 70.9
Glyma.04G082500 Glycine max HOM05D005302 ORTHO05D006422 2.6e-217 758.8 454 74.9
CSS0024291 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 5.8e-217 757.7 452 76.1
CSS0027627 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 5.8e-217 757.7 452 76.1
Cc08_g09240 Coffea canephora HOM05D005302 ORTHO05D006422 1.3e-216 756.5 451 77.2
FAN27G3010 Fragaria x ananassa HOM05D005302 ORTHO05D006422 1.7e-216 756.1 509 69.7
QL12p029391 Quercus lobata HOM05D005302 ORTHO05D006422 2.9e-216 755.4 522 68.6
Glyma.06G084100 Glycine max HOM05D005302 ORTHO05D006422 3.7e-216 755.0 436 76.4
Potri.018G040200 Populus trichocarpa HOM05D005302 ORTHO05D006422 1.4e-215 753.1 484 72.9
Psat5g022320 Pisum sativum HOM05D005302 ORTHO05D006422 2.4e-215 752.3 428 77.3
Duzib150G0232 Durio zibethinus HOM05D005302 ORTHO05D006422 2.7e-214 748.8 516 67.8
PSO210G0275 Papaver somniferum HOM05D005302 ORTHO05D006422 2.3e-213 745.7 450 75.6
Thecc.09G042800 Theobroma cacao HOM05D005302 ORTHO05D006422 8.6e-213 743.8 513 67.4
PSO210G3865 Papaver somniferum HOM05D005302 ORTHO05D006422 1.5e-212 743.0 450 75.6
Gohir.A07G022700 Gossypium hirsutum HOM05D005302 ORTHO05D006422 1.9e-212 742.7 495 68.5
COL.COLO4_18671 Corchorus olitorius HOM05D005302 ORTHO05D006422 5.6e-212 741.1 516 68.2
Phvul.009G108200 Phaseolus vulgaris HOM05D005302 ORTHO05D006422 1.6e-211 739.6 434 75.8
BolC7t46379H Brassica oleracea HOM05D005302 ORTHO05D006422 3.6e-211 738.4 491 70.3
Lalb_Chr08g0243151 Lupinus albus HOM05D005302 ORTHO05D006422 3.6e-211 738.4 483 68.7
CARHR240760 Cardamine hirsuta HOM05D005302 ORTHO05D006422 4.7e-211 738.0 489 70.6
Gohir.D07G026100 Gossypium hirsutum HOM05D005302 ORTHO05D006422 4.7e-211 738.0 495 68.1
Gorai.001G027200 Gossypium raimondii HOM05D005302 ORTHO05D006422 4.7e-211 738.0 494 68.6
CsaV3_2G030970 Cucumis sativus L. HOM05D005302 ORTHO05D006422 6.2e-211 737.6 496 70.0
Lj1g0022106 Lotus japonicus HOM05D005302 ORTHO05D006422 8.1e-211 737.3 425 76.5
MELO3C011150.2 Cucumis melo HOM05D005302 ORTHO05D006422 2.3e-210 735.7 472 72.7
EL10Ac2g04046 Beta vulgaris HOM05D005302 ORTHO05D006422 4.0e-210 734.9 457 73.7
VMungo1309G1003 Vigna mungo HOM05D005302 ORTHO05D006422 5.2e-210 734.6 434 75.1
C07p59340 Brassica napus HOM05D005302 ORTHO05D006422 6.8e-210 734.2 492 70.1
Carub.0007s0772 Capsella rubella HOM05D005302 ORTHO05D006422 8.9e-210 733.8 465 72.5
MSTRG.11705 Avicennia marina HOM05D005302 ORTHO05D006422 1.2e-209 733.4 485 70.3
Nitab4.5_0010908g0010 Nicotiana tabacum HOM05D005302 ORTHO05D006422 1.2e-209 733.4 440 75.7
Thhalv10025006m.g Eutrema salsugineum HOM05D005302 ORTHO05D006422 2.0e-209 732.6 454 73.1
Peaxi162Scf00822g00210 Petunia axillaris HOM05D005302 ORTHO05D006422 2.0e-209 732.6 424 77.6
AT4G32770 Arabidopsis thaliana HOM05D005302 ORTHO05D006422 2.6e-209 732.3 486 70.8
Gohir.A05G047400 Gossypium hirsutum HOM05D005302 ORTHO05D006422 2.6e-209 732.3 479 70.8
Sp7g30530 Schrenkiella parvula HOM05D005302 ORTHO05D006422 4.4e-209 731.5 457 72.9
A03p61580 Brassica napus HOM05D005302 ORTHO05D006422 1.7e-208 729.6 493 70.2
BraA03t15200Z Brassica rapa HOM05D005302 ORTHO05D006422 1.7e-208 729.6 493 70.2
PGSC0003DMG400029051 Solanum tuberosum HOM05D005302 ORTHO05D006422 1.7e-208 729.6 444 75.2
AL7G18970 Arabidopsis lyrata HOM05D005302 ORTHO05D006422 3.7e-208 728.4 486 70.4
Sed0007027 Sechium edule HOM05D005302 ORTHO05D006422 3.7e-208 728.4 423 76.6
Sopen08g022330 Solanum pennellii HOM05D005302 ORTHO05D006422 3.7e-208 728.4 444 75.5
arahy.Tifrunner.gnm1.ann1.R6A5BY Arachis hypogaea HOM05D005302 ORTHO05D006422 6.4e-208 727.6 429 74.6
CAN.G21.50 Capsicum annuum HOM05D005302 ORTHO05D006422 8.4e-208 727.2 424 76.4
ECA246G0277 Erigeron canadensis HOM05D005302 ORTHO05D006422 1.1e-207 726.9 424 76.2
DCAR_003119 Daucus carota HOM05D005302 ORTHO05D006422 1.4e-207 726.5 494 69.6
Solyc08g068570.4 Solanum lycopersicum HOM05D005302 ORTHO05D006422 1.4e-207 726.5 444 75.2
arahy.Tifrunner.gnm1.ann1.P7Z4SB Arachis hypogaea HOM05D005302 ORTHO05D006422 1.9e-207 726.1 429 74.6
AUR62009303 Chenopodium quinoa HOM05D005302 ORTHO05D006422 4.1e-207 724.9 505 68.3
Migut.A00220 Erythranthe guttata HOM05D005302 ORTHO05D006422 9.2e-207 723.8 441 72.8
SalBow4G1479 Salvia bowleyana HOM05D005302 ORTHO05D006422 3.5e-206 721.8 443 73.4
HanXRQChr08g0236291 Helianthus annuus HOM05D005302 ORTHO05D006422 1.0e-205 720.3 426 75.6
Aa31LG2G17190 Aethionema arabicum HOM05D005302 ORTHO05D006422 1.7e-205 719.5 457 72.6
SGA_v2.0_scaffold103G29944 Striga asiatica HOM05D005302 ORTHO05D006422 1.1e-204 716.8 442 73.3
FAN20G2881 Fragaria x ananassa HOM05D005302 ORTHO05D006422 3.3e-204 715.3 544 64.2
Sabra18G0040100 Salix brachista HOM05D005302 ORTHO05D006422 9.6e-204 713.8 481 69.9
Lj8C588T0 Lonicera japonica HOM05D005302 ORTHO05D006422 2.8e-203 712.2 463 71.1
FAN15G3230 Fragaria x ananassa HOM05D005302 ORTHO05D006422 3.6e-203 711.8 539 63.6
Lsat_1_v5_gn_5_33600 Lactuca sativa HOM05D005302 ORTHO05D006422 9.3e-199 697.2 421 73.4
CDE08G0186 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 5.1e-197 691.4 459 67.1
ATR0315G120 Amborella trichopoda HOM05D005302 ORTHO05D006422 7.3e-196 687.6 423 71.6
Os02g0276500 Oryza sativa ssp. japonica HOM05D005302 ORTHO05D006422 8.1e-195 684.1 427 71.7
unitig_32.g11070 Utricularia gibba HOM05D005302 ORTHO05D006422 1.1e-194 683.7 442 68.8
ClCG08G012300 Citrullus lanatus HOM05D005302 ORTHO05D006422 1.4e-194 683.3 430 72.6
THA.LOC104803808 Tarenaya hassleriana HOM05D005302 ORTHO05D006422 2.6e-193 679.1 386 78.5
Cpa.g.sc7.259 Carica papaya HOM05D005302 ORTHO05D006422 1.4e-191 673.3 378 81.0
MBI04_g05261_MAGBIO Magnolia biondii HOM05D005302 ORTHO05D006422 4.2e-191 671.8 539 60.7
Oeu036363.2 Olea europaea HOM05D005302 ORTHO05D006422 2.7e-190 669.1 429 73.4
Nitab4.5_0000513g0060 Nicotiana tabacum HOM05D005302 ORTHO05D006422 4.3e-188 661.8 477 66.5
Hund19525 Selenicereus undatus HOM05D005302 ORTHO05D006422 1.3e-187 660.2 453 68.9
CDE05G0893 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 1.8e-186 656.4 424 67.2
LjContig00226g0022694 Lotus japonicus HOM05D005302 ORTHO05D006422 2.9e-184 649.0 380 75.3
LjContig00518g0000858 Lotus japonicus HOM05D005302 ORTHO05D006422 2.9e-184 649.0 380 75.3
AUR62041718 Chenopodium quinoa HOM05D005302 ORTHO05D006422 2.7e-182 642.5 439 69.9
Sc23g0005290 Simmondsia chinensis HOM05D005302 ORTHO05D006422 9.6e-180 634.0 374 76.7
Lj1g0000494 Lotus japonicus HOM05D005302 ORTHO05D006422 1.1e-175 620.5 380 73.7
Ah.16g105570 Amaranthus hybridus HOM05D005302 ORTHO05D006422 2.1e-174 616.3 346 80.1
Cfa013434 Carpinus fangiana HOM05D005302 ORTHO05D006422 2.7e-174 615.9 398 71.6
HPP92_005269 Vanilla planifolia HOM05D005302 ORTHO05D006422 6.0e-174 614.8 428 67.1
Cfa013357 Carpinus fangiana HOM05D005302 ORTHO05D006422 3.0e-173 612.5 507 59.6
Cfa013356 Carpinus fangiana HOM05D005302 ORTHO05D006422 1.3e-165 587.0 325 79.7
AagrBONN_evm.TU.Sc2ySwM_368.1981 Anthoceros agrestis HOM05D005302 ORTHO05D006422 8.7e-165 584.3 417 63.3
Lj1g0015489 Lotus japonicus HOM05D005302 ORTHO05D006422 1.9e-164 583.2 425 65.2
vmacro11066 Vaccinium macrocarpon HOM05D005302 ORTHO05D006422 5.7e-164 581.6 408 67.6
Haze_21992 Corylus avellana HOM05D005302 ORTHO05D006422 1.4e-162 577.0 518 55.4
Pp3c7_470 Physcomitrium patens HOM05D005302 ORTHO05D006422 4.1e-162 575.5 440 60.0
Mapoly0027s0036 Marchantia polymorpha HOM05D005302 ORTHO05D006422 2.9e-160 569.3 467 57.8
Pp3c20_5100 Physcomitrium patens HOM05D005302 ORTHO05D006422 2.0e-145 520.0 426 56.1
Lj1g0026118 Lotus japonicus HOM05D005302 ORTHO05D006422 5.9e-145 518.5 426 60.3
SMO351G0603 Selaginella moellendorffii HOM05D005302 ORTHO05D006422 2.9e-144 516.2 396 58.6
Zm00001eb237270 Zea mays HOM05D005302 ORTHO05D006422 1.1e-143 514.2 321 71.3
CBR_g222 Chara braunii HOM05D005302 ORTHO05D006422 2.1e-134 483.4 427 54.3
Cc07_g15020 Coffea canephora HOM05D005302 ORTHO05D006422 3.0e-133 479.6 269 78.8
Hma1.2p1_1884F.1_g306470 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 6.3e-123 445.3 252 79.0
Cre01.g013801 Chlamydomonas reinhardtii HOM05D005302 ORTHO05D006422 4.3e-103 379.4 455 41.8
Lj7A704G80 Lonicera japonica HOM05D005302 ORTHO05D006422 6.2e-102 375.6 218 76.1
Hma1.2p1_1884F.1_g306480 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 1.2e-81 308.1 184 75.0
Lj7A704G81 Lonicera japonica HOM05D005302 ORTHO05D006422 7.6e-76 288.9 162 79.6
MCO11G337 Micromonas commoda HOM05D005302 ORTHO05D006422 2.4e-74 283.9 421 39.4
Hma1.2p1_0393F.1_g143070 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 1.8e-64 251.1 148 73.6
CDE05G2043 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 1.1e-61 241.9 356 38.8
Glyma.04G082300 Glycine max HOM05D005302 ORTHO05D006422 1.1e-55 221.9 171 63.2
SEGI_29042 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 1.5e-55 221.5 110 85.5
Hma1.2p1_0393F.1_g143090 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 4.3e-55 219.9 125 79.2
SEGI_31241 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 8.5e-51 205.7 148 60.8
FAN24G1627 Fragaria x ananassa HOM05D005302 ORTHO05D006422 1.3e-46 191.8 118 73.7
Sabra18G0041600 Salix brachista HOM05D005302 ORTHO05D006422 1.8e-40 171.4 111 69.4
SEGI_07805 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 6.7e-40 169.5 129 60.5
Potri.006G240100 Populus trichocarpa HOM05D005302 ORTHO05D006422 5.0e-35 153.3 185 45.9
arahy.Tifrunner.gnm1.ann1.B6YE6K Arachis hypogaea HOM05D005302 ORTHO05D006422 4.7e-33 146.7 192 44.3
CDE05G1694 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 3.2e-18 97.4 61 67.2
Sabra18G0041700 Salix brachista HOM05D005302 ORTHO05D006422 1.0e-16 92.4 60 66.7
BcaC09g52073 Brassica carinata HOM05D002602 ORTHO05D002661 3.6e-09 67.4 41 68.3
CDE02G1858 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 4.9e-06 57.0 129 31.8


User provided reference genes

Program Settings