Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G0587 Cannabis sativa HOM05D008077 ORTHO05D010221 1.1e-128 463.4 240 100.0
Cfa013722 Carpinus fangiana HOM05D008077 ORTHO05D010221 3.0e-54 216.1 213 53.1
Haze_22366 Corylus avellana HOM05D008077 ORTHO05D010221 6.6e-54 214.9 213 52.6
Atru.chr13.887 Acer truncatum HOM05D008077 ORTHO05D010221 7.6e-50 201.4 225 48.0
Dinv39194 Davidia involucrata HOM05D008077 ORTHO05D010221 1.1e-48 197.6 233 45.1
Hma1.2p1_4204F.1_g338450 Hydrangea macrophylla HOM05D008077 ORTHO05D010221 3.2e-48 196.1 230 45.2
QL09p016211 Quercus lobata HOM05D008077 ORTHO05D010221 5.4e-48 195.3 239 44.4
Dinv44921 Davidia involucrata HOM05D008077 ORTHO05D010221 4.6e-47 192.2 238 45.0
Potri.005G149500 Populus trichocarpa HOM05D008077 ORTHO05D010221 5.1e-46 188.7 224 46.9
CSS0006446 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 1.1e-45 187.6 234 42.7
GSVIVG01009281001 Vitis vinifera HOM05D008077 ORTHO05D010221 2.5e-45 186.4 238 44.5
TWI56G0834 Tripterygium wilfordii HOM05D008077 ORTHO05D010221 7.4e-45 184.9 227 42.3
RcHm_v2.0_Chr6g0310221 Rosa chinensis HOM05D008077 ORTHO05D010221 2.1e-44 183.3 235 46.4
CiPaw.08G053400 Carya illinoinensis HOM05D008077 ORTHO05D010221 4.8e-44 182.2 162 53.7
TAR376G0563 Trochodendron aralioides HOM05D008077 ORTHO05D010221 6.2e-44 181.8 184 47.3
Eucgr.F02208 Eucalyptus grandis HOM05D008077 ORTHO05D010221 1.1e-43 181.0 212 46.2
CSS0048473 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 1.8e-43 180.3 177 48.0
Thecc.08G082700 Theobroma cacao HOM05D008077 ORTHO05D010221 1.8e-43 180.3 221 43.9
Duzib116G0694 Durio zibethinus HOM05D008077 ORTHO05D010221 4.0e-43 179.1 229 42.4
Manes.18G051200 Manihot esculenta HOM05D008077 ORTHO05D010221 4.5e-42 175.6 231 44.2
Prupe.1G417600 Prunus persica HOM05D008077 ORTHO05D010221 9.9e-42 174.5 226 45.6
FAN24G1375 Fragaria x ananassa HOM05D008077 ORTHO05D010221 1.3e-41 174.1 224 47.3
Lalb_Chr14g0367971 Lupinus albus HOM05D008077 ORTHO05D010221 2.2e-41 173.3 221 41.6
Nn6g34549 Nelumbo nucifera HOM05D008077 ORTHO05D010221 1.4e-40 170.6 230 40.4
FvH4_2g32450 Fragaria vesca HOM05D008077 ORTHO05D010221 1.9e-40 170.2 224 46.4
FAN20G1346 Fragaria x ananassa HOM05D008077 ORTHO05D010221 1.9e-40 170.2 224 47.3
Phvul.001G032000 Phaseolus vulgaris HOM05D008077 ORTHO05D010221 2.4e-40 169.9 204 44.1
Sabra05G0118800 Salix brachista HOM05D008077 ORTHO05D010221 2.4e-40 169.9 176 48.9
MD08G1076300 Malus domestica HOM05D008077 ORTHO05D010221 3.5e-39 166.0 234 44.4
Ciclev10002390m.g Citrus clementina HOM05D008077 ORTHO05D010221 4.6e-39 165.6 223 41.3
VMungo0647G0255 Vigna mungo HOM05D008077 ORTHO05D010221 1.0e-38 164.5 210 42.4
Gohir.A01G124500 Gossypium hirsutum HOM05D008077 ORTHO05D010221 1.8e-38 163.7 216 42.6
PSO541G6554 Papaver somniferum HOM05D008077 ORTHO05D010221 1.8e-38 163.7 229 41.0
Gohir.D01G112200 Gossypium hirsutum HOM05D008077 ORTHO05D010221 3.9e-38 162.5 234 40.2
arahy.Tifrunner.gnm1.ann1.JS0EE0 Arachis hypogaea HOM05D008077 ORTHO05D010221 5.1e-38 162.2 181 45.3
Hund05263 Selenicereus undatus HOM05D008077 ORTHO05D010221 1.5e-37 160.6 221 43.0
FAN27G3028 Fragaria x ananassa HOM05D008077 ORTHO05D010221 1.9e-37 160.2 224 46.4
Gorai.002G137100 Gossypium raimondii HOM05D008077 ORTHO05D010221 1.9e-37 160.2 234 39.7
arahy.Tifrunner.gnm1.ann1.PWM57A Arachis hypogaea HOM05D008077 ORTHO05D010221 9.6e-37 157.9 227 40.1
AUR62039341 Chenopodium quinoa HOM05D008077 ORTHO05D010221 1.3e-36 157.5 198 43.4
Actinidia19284 Actinidia chinensis HOM05D008077 ORTHO05D010221 1.6e-36 157.1 234 39.3
ClCG05G017630 Citrullus lanatus HOM05D008077 ORTHO05D010221 2.1e-36 156.8 224 41.1
EL10Ac1g02339 Beta vulgaris HOM05D008077 ORTHO05D010221 2.8e-36 156.4 206 44.2
AUR62034975 Chenopodium quinoa HOM05D008077 ORTHO05D010221 6.2e-36 155.2 151 51.0
Glyma.14G090800 Glycine max HOM05D008077 ORTHO05D010221 6.2e-36 155.2 213 39.9
Sc02g0008240 Simmondsia chinensis HOM05D008077 ORTHO05D010221 6.2e-36 155.2 209 41.1
PSO675G3170 Papaver somniferum HOM05D008077 ORTHO05D010221 1.1e-35 154.5 219 40.2
Glyma.17G232225 Glycine max HOM05D008077 ORTHO05D010221 1.4e-35 154.1 231 41.1
Actinidia10235 Actinidia chinensis HOM05D008077 ORTHO05D010221 9.0e-35 151.4 230 37.0
PGR031G0263 Punica granatum HOM05D008077 ORTHO05D010221 9.0e-35 151.4 227 36.1
FAN15G0649 Fragaria x ananassa HOM05D008077 ORTHO05D010221 3.4e-34 149.4 224 42.9
MBI16_g09811_MAGBIO Magnolia biondii HOM05D008077 ORTHO05D010221 1.0e-33 147.9 196 39.3
CsaV3_4G035360 Cucumis sativus L. HOM05D008077 ORTHO05D010221 1.3e-33 147.5 224 40.2
Cc10_g07800 Coffea canephora HOM05D008077 ORTHO05D010221 1.7e-33 147.1 234 38.0
Oeu048561.1 Olea europaea HOM05D008077 ORTHO05D010221 2.9e-33 146.4 143 46.9
Medtr1g017160 Medicago truncatula HOM05D008077 ORTHO05D010221 7.1e-32 141.7 165 43.6
Ca_06992_v3 Cicer arietinum L. HOM05D008077 ORTHO05D010221 9.3e-32 141.4 164 45.1
TPR.G13063 Trifolium pratense HOM05D008077 ORTHO05D010221 4.6e-31 139.0 213 39.4
THA.LOC104806984 Tarenaya hassleriana HOM05D008077 ORTHO05D010221 1.8e-30 137.1 191 37.2
MSTRG.22201 Avicennia marina HOM05D008077 ORTHO05D010221 2.3e-30 136.7 235 36.2
Psat6g018560 Pisum sativum HOM05D008077 ORTHO05D010221 4.3e-29 132.5 164 42.1
CDE06G2465 Ceratophyllum demersum HOM05D008077 ORTHO05D010221 2.0e-26 123.6 179 41.9
Sed0028055 Sechium edule HOM05D008077 ORTHO05D010221 1.4e-24 117.5 157 41.4
SEGI_41084 Sequoiadendron giganteum HOM05D007054 ORTHO05D008888 1.0e-22 111.3 207 33.3
Lj5g0022198 Lotus japonicus HOM05D008077 ORTHO05D010221 6.7e-22 108.6 141 40.4
Gorai.008G026400 Gossypium raimondii HOM05D007054 ORTHO05D008888 4.3e-21 105.9 205 32.7
Gohir.D12G026100 Gossypium hirsutum HOM05D007054 ORTHO05D008888 5.7e-21 105.5 205 32.7
Gohir.A12G026500 Gossypium hirsutum HOM05D007054 ORTHO05D008888 2.2e-20 103.6 184 33.7
TPR.G13160 Trifolium pratense HOM05D008077 ORTHO05D010221 3.7e-20 102.8 221 34.4
CiPaw.05G055500 Carya illinoinensis HOM05D007054 ORTHO05D008888 4.8e-20 102.4 195 31.3
Ciclev10029145m.g Citrus clementina HOM05D007054 ORTHO05D008888 1.4e-19 100.9 180 32.8
CSS0047307 Camellia sinensis var. sinensis HOM05D007054 ORTHO05D008888 3.1e-19 99.8 167 32.9
Migut.N02805 Erythranthe guttata HOM05D008077 ORTHO05D010221 5.3e-19 99.0 157 36.9
MELO3C016846.2 Cucumis melo HOM05D008077 ORTHO05D010221 6.9e-19 98.6 177 36.7
PGR142G2758 Punica granatum HOM05D007054 ORTHO05D008888 6.9e-19 98.6 160 33.8
COL.COLO4_28429 Corchorus olitorius HOM05D008077 ORTHO05D010221 1.2e-18 97.8 132 38.6
CANSAT25G2549 Cannabis sativa HOM05D007054 ORTHO05D008888 1.5e-18 97.4 210 30.0
Atru.chr5.2831 Acer truncatum HOM05D007054 ORTHO05D008888 2.0e-18 97.1 248 28.2
Lj2g0019135 Lotus japonicus HOM05D007054 ORTHO05D008888 2.6e-18 96.7 223 27.8
HPP92_006033 Vanilla planifolia HOM05D008077 ORTHO05D010221 1.0e-17 94.7 112 37.5
MBI16_g08580_MAGBIO Magnolia biondii HOM05D007054 ORTHO05D008888 1.3e-17 94.4 190 32.1
Hma1.2p1_1543F.1_g289790 Hydrangea macrophylla HOM05D007054 ORTHO05D008888 1.7e-17 94.0 215 30.2
GSVIVG01031807001 Vitis vinifera HOM05D007054 ORTHO05D008888 1.7e-17 94.0 176 32.4
Duzib132G1179 Durio zibethinus HOM05D007054 ORTHO05D008888 2.2e-17 93.6 185 32.4
Potri.004G145600 Populus trichocarpa HOM05D007054 ORTHO05D008888 2.9e-17 93.2 166 33.1
Thecc.02G095100 Theobroma cacao HOM05D007054 ORTHO05D008888 3.8e-17 92.8 207 30.9
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 5.0e-17 92.4 181 31.5
unitig_578.g16165 Utricularia gibba HOM05D008077 ORTHO05D010221 5.0e-17 92.4 123 40.7
ATR0767G176 Amborella trichopoda HOM05D007054 ORTHO05D008888 6.5e-17 92.0 182 30.2
Manes.15G143900 Manihot esculenta HOM05D007054 ORTHO05D008888 8.5e-17 91.7 202 31.7
Sabra04G0096600 Salix brachista HOM05D007054 ORTHO05D008888 8.5e-17 91.7 166 33.1
Lj9C361T14 Lonicera japonica HOM05D007054 ORTHO05D008888 1.1e-16 91.3 179 29.1
MELO3C018427.2 Cucumis melo HOM05D007054 ORTHO05D008888 1.9e-16 90.5 182 29.1
PSO541G2621 Papaver somniferum HOM05D007054 ORTHO05D008888 1.9e-16 90.5 166 30.1
TWI79G0983 Tripterygium wilfordii HOM05D007054 ORTHO05D008888 1.9e-16 90.5 160 31.2
PSO675G3773 Papaver somniferum HOM05D007054 ORTHO05D008888 3.2e-16 89.7 166 30.1
QL11p038609 Quercus lobata HOM05D007054 ORTHO05D008888 4.2e-16 89.4 190 30.0
Sc26g0004390 Simmondsia chinensis HOM05D007054 ORTHO05D008888 4.2e-16 89.4 181 30.4
TAR625G1358 Trochodendron aralioides HOM05D007054 ORTHO05D008888 4.2e-16 89.4 166 31.3
Phvul.003G012100 Phaseolus vulgaris HOM05D007054 ORTHO05D008888 5.5e-16 89.0 231 29.4
Cfa005418 Carpinus fangiana HOM05D007054 ORTHO05D008888 7.2e-16 88.6 182 30.2
Haze_01879 Corylus avellana HOM05D007054 ORTHO05D008888 9.4e-16 88.2 212 28.3
THA.LOC104798802 Tarenaya hassleriana HOM05D007054 ORTHO05D008888 2.7e-15 86.7 186 28.5
Medtr1g034050 Medicago truncatula HOM05D007054 ORTHO05D008888 3.6e-15 86.3 210 28.6
Dinv42118 Davidia involucrata HOM05D007054 ORTHO05D008888 4.7e-15 85.9 164 31.1
Oeu021925.1 Olea europaea HOM05D007054 ORTHO05D008888 4.7e-15 85.9 166 26.5
TPR.G11147 Trifolium pratense HOM05D007054 ORTHO05D008888 7.9e-15 85.1 192 28.1
Migut.N01207 Erythranthe guttata HOM05D007054 ORTHO05D008888 1.4e-14 84.3 208 26.0
Nitab4.5_0001401g0040 Nicotiana tabacum HOM05D007054 ORTHO05D008888 1.4e-14 84.3 222 28.8
Lalb_Chr01g0013331 Lupinus albus HOM05D007054 ORTHO05D008888 2.3e-14 83.6 165 29.1
RcHm_v2.0_Chr6g0259351 Rosa chinensis HOM05D007054 ORTHO05D008888 3.0e-14 83.2 194 27.8
CDE02G0602 Ceratophyllum demersum HOM05D007054 ORTHO05D008888 3.9e-14 82.8 168 29.8
ClCG02G005650 Citrullus lanatus HOM05D007054 ORTHO05D008888 3.9e-14 82.8 216 29.6
Aqoxy2G00166 Aquilegia oxysepala HOM05D007054 ORTHO05D008888 5.1e-14 82.4 187 24.1
CsaV3_7G008860 Cucumis sativus L. HOM05D007054 ORTHO05D008888 5.1e-14 82.4 182 28.0
Solyc01g108650.3 Solanum lycopersicum HOM05D007054 ORTHO05D008888 5.1e-14 82.4 165 29.1
Ca_12472_v3 Cicer arietinum L. HOM05D007054 ORTHO05D008888 1.1e-13 81.3 228 28.5
Prupe.8G115700 Prunus persica HOM05D007054 ORTHO05D008888 1.1e-13 81.3 166 29.5
TAR381G0282 Trochodendron aralioides HOM05D007054 ORTHO05D008888 1.1e-13 81.3 243 26.3
Sopen01g050870 Solanum pennellii HOM05D007054 ORTHO05D008888 1.5e-13 80.9 165 28.5
Aa31LG8G5880 Aethionema arabicum HOM05D007054 ORTHO05D008888 2.0e-13 80.5 178 28.1
MD00G1050600 Malus domestica HOM05D007054 ORTHO05D008888 2.0e-13 80.5 218 27.1
PGSC0003DMG400025902 Solanum tuberosum HOM05D007054 ORTHO05D008888 2.0e-13 80.5 165 28.5
AL1G56860 Arabidopsis lyrata HOM05D007054 ORTHO05D008888 3.3e-13 79.7 128 29.7
CAN.G322.40 Capsicum annuum HOM05D007054 ORTHO05D008888 5.7e-13 79.0 184 27.2
FAN15G2151 Fragaria x ananassa HOM05D007054 ORTHO05D008888 5.7e-13 79.0 189 27.5
Carub.0001s3870 Capsella rubella HOM05D007054 ORTHO05D008888 7.4e-13 78.6 163 28.8
FvH4_2g07010 Fragaria vesca HOM05D007054 ORTHO05D008888 7.4e-13 78.6 160 28.8
Oeu057672.1 Olea europaea HOM05D007054 ORTHO05D008888 7.4e-13 78.6 140 27.9
Pp3c23_6910 Physcomitrium patens HOM05D007054 ORTHO05D008888 7.4e-13 78.6 221 27.1
CARHR039530 Cardamine hirsuta HOM05D007054 ORTHO05D008888 9.7e-13 78.2 159 28.3
AT1G49510 Arabidopsis thaliana HOM05D007054 ORTHO05D008888 1.7e-12 77.4 128 29.7
Glyma.07G179400 Glycine max HOM05D007054 ORTHO05D008888 2.2e-12 77.0 188 28.2
AagrBONN_evm.TU.Sc2ySwM_344.1640 Anthoceros agrestis HOM05D007054 ORTHO05D008888 2.8e-12 76.6 149 27.5
EL10Ac6g14668 Beta vulgaris HOM05D007054 ORTHO05D008888 2.8e-12 76.6 200 26.5
AUR62007867 Chenopodium quinoa HOM05D007054 ORTHO05D008888 3.7e-12 76.3 157 27.4
Glyma.20G009500 Glycine max HOM05D007054 ORTHO05D008888 4.8e-12 75.9 204 26.5
SalBow3G3466 Salvia bowleyana HOM05D007054 ORTHO05D008888 6.3e-12 75.5 181 24.9
Thhalv10011746m.g Eutrema salsugineum HOM05D007054 ORTHO05D008888 1.4e-11 74.3 231 26.4
A05p20580 Brassica napus HOM05D007054 ORTHO05D008888 2.4e-11 73.6 128 28.1
BraA05t20968Z Brassica rapa HOM05D007054 ORTHO05D008888 2.4e-11 73.6 128 28.1
AUR62003054 Chenopodium quinoa HOM05D007054 ORTHO05D008888 2.4e-11 73.6 153 26.8
Ah.01g002690 Amaranthus hybridus HOM05D007054 ORTHO05D008888 3.1e-11 73.2 157 25.5
BcaC05g27487 Brassica carinata HOM05D007054 ORTHO05D008888 5.3e-11 72.4 128 27.3
C05p34530 Brassica napus HOM05D007054 ORTHO05D008888 5.3e-11 72.4 128 27.3
Aa31LG10G4480 Aethionema arabicum HOM05D007054 ORTHO05D008888 6.9e-11 72.0 180 25.0
Cc02_g18390 Coffea canephora HOM05D007054 ORTHO05D008888 6.9e-11 72.0 166 25.9
MD15G1063400 Malus domestica HOM05D008077 ORTHO05D010221 6.9e-11 72.0 106 38.7
Sp1g36370 Schrenkiella parvula HOM05D007054 ORTHO05D008888 9.1e-11 71.6 207 25.1
HPP92_001831 Vanilla planifolia HOM05D007054 ORTHO05D008888 1.2e-10 71.2 143 29.4
BcaB02g11085 Brassica carinata HOM05D007054 ORTHO05D008888 2.0e-10 70.5 158 25.3
BolC5t32180H Brassica oleracea HOM05D007054 ORTHO05D008888 2.0e-10 70.5 128 27.3
FAN27G0716 Fragaria x ananassa HOM05D007054 ORTHO05D008888 2.0e-10 70.5 208 28.4
ECA234G0688 Erigeron canadensis HOM05D007054 ORTHO05D008888 5.9e-10 68.9 218 25.7
SGA_v2.0_scaffold152G36867 Striga asiatica HOM05D008077 ORTHO05D010221 5.0e-09 65.9 141 32.6
SGA_v2.0_scaffold9G04688 Striga asiatica HOM05D007054 ORTHO05D008888 8.5e-09 65.1 166 23.5
Eucgr.I01181 Eucalyptus grandis HOM05D007054 ORTHO05D008888 9.4e-08 61.6 134 29.1
Cpa.g.sc62.54 Carica papaya HOM05D007054 ORTHO05D008888 1.8e-06 57.4 111 27.0
FAN24G1908 Fragaria x ananassa HOM05D007054 ORTHO05D008888 1.8e-06 57.4 139 26.6
SEGI_26902 Sequoiadendron giganteum HOM05D007054 ORTHO05D008888 3.0e-06 56.6 115 28.7
DCAR_022067 Daucus carota HOM05D007054 ORTHO05D008888 3.9e-06 56.2 152 25.7


User provided reference genes

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