Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G0437 Cannabis sativa HOM05D000003 ORTHO05D000283 5.0e-81 304.3 144 100.0
CANSAT01G0114 Cannabis sativa HOM05D000003 ORTHO05D000283 5.2e-78 294.3 144 95.8
CANSAT64G1318 Cannabis sativa HOM05D000003 ORTHO05D000283 2.2e-73 278.9 144 91.0
CANSAT56G2948 Cannabis sativa HOM05D000003 ORTHO05D000283 5.6e-48 194.5 144 61.1
CANSAT80G0884 Cannabis sativa HOM05D000003 ORTHO05D000004 7.0e-43 177.6 141 55.3
CANSAT80G1810 Cannabis sativa HOM05D000003 ORTHO05D000004 9.2e-43 177.2 130 60.0
CANSAT35G1509 Cannabis sativa HOM05D000003 ORTHO05D000283 1.5e-40 169.9 144 52.1
CANSAT35G1615 Cannabis sativa HOM05D000003 ORTHO05D000283 2.5e-40 169.1 144 51.4
CANSAT11G1452 Cannabis sativa HOM05D000003 ORTHO05D000283 1.8e-38 162.9 144 50.0
CANSAT54G2858 Cannabis sativa HOM05D000003 ORTHO05D000283 2.0e-37 159.5 140 48.6
CANSAT54G2486 Cannabis sativa HOM05D000003 ORTHO05D000283 1.4e-35 153.3 144 47.9
CANSAT64G0644 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-34 149.8 144 47.2
CANSAT01G0556 Cannabis sativa HOM05D000003 ORTHO05D000283 3.5e-34 148.7 141 44.7
CANSAT64G0488 Cannabis sativa HOM05D000003 ORTHO05D000283 1.0e-33 147.1 131 48.9
CANSAT11G1606 Cannabis sativa HOM05D000003 ORTHO05D000283 1.5e-32 143.3 141 43.3
CANSAT21G1632 Cannabis sativa HOM05D000003 ORTHO05D000283 4.7e-31 138.3 122 51.6
CANSAT80G0724 Cannabis sativa HOM05D000003 ORTHO05D000283 4.7e-31 138.3 142 41.5
CANSAT01G0969 Cannabis sativa HOM05D000003 ORTHO05D000004 1.1e-30 137.1 142 42.3
CANSAT35G2061 Cannabis sativa HOM05D000003 ORTHO05D000004 1.1e-30 137.1 136 44.9
CANSAT80G2053 Cannabis sativa HOM05D000003 ORTHO05D000283 1.1e-30 137.1 144 42.4
CANSAT54G2598 Cannabis sativa HOM05D000003 ORTHO05D000283 3.4e-29 132.1 143 44.8
CANSAT64G0333 Cannabis sativa HOM05D000003 ORTHO05D000283 3.4e-29 132.1 144 39.6
CANSAT64G0889 Cannabis sativa HOM05D000003 ORTHO05D000283 5.8e-29 131.3 144 41.0
CANSAT56G1830 Cannabis sativa HOM05D000003 ORTHO05D000283 1.3e-28 130.2 144 39.6
CANSAT80G0431 Cannabis sativa HOM05D000003 ORTHO05D000004 2.9e-28 129.0 144 40.3
CANSAT35G1278 Cannabis sativa HOM05D000003 ORTHO05D000283 8.4e-28 127.5 144 40.3
CANSAT54G2737 Cannabis sativa HOM05D000003 ORTHO05D000283 2.4e-27 125.9 143 42.7
CANSAT64G1732 Cannabis sativa HOM05D000003 ORTHO05D000283 2.4e-27 125.9 142 41.5
CANSAT80G0153 Cannabis sativa HOM05D000003 ORTHO05D000004 5.4e-27 124.8 140 41.4
CANSAT21G1808 Cannabis sativa HOM05D000003 ORTHO05D000004 1.2e-26 123.6 144 41.0
CANSAT56G3640 Cannabis sativa HOM05D000003 ORTHO05D000283 1.2e-26 123.6 141 39.7
CANSAT80G1505 Cannabis sativa HOM05D000003 ORTHO05D000283 1.2e-26 123.6 142 38.0
CANSAT11G2646 Cannabis sativa HOM05D000003 ORTHO05D000283 6.0e-26 121.3 131 43.5
CANSAT80G2922 Cannabis sativa HOM05D000003 ORTHO05D000004 7.8e-26 120.9 144 40.3
CANSAT11G0832 Cannabis sativa HOM05D000003 ORTHO05D000004 1.0e-25 120.6 100 54.0
CANSAT11G0144 Cannabis sativa HOM05D000003 ORTHO05D000283 1.1e-24 117.1 142 40.8
CANSAT80G1175 Cannabis sativa HOM05D000003 ORTHO05D000004 1.9e-24 116.3 100 49.0
CANSAT64G0747 Cannabis sativa HOM05D000003 ORTHO05D000283 2.5e-24 115.9 144 38.9
CANSAT21G0904 Cannabis sativa HOM05D000003 ORTHO05D000004 4.3e-24 115.2 98 49.0
CANSAT01G1188 Cannabis sativa HOM05D000003 ORTHO05D000004 2.8e-23 112.5 115 47.0
CANSAT25G1242 Cannabis sativa HOM05D000003 ORTHO05D000283 2.8e-23 112.5 145 37.9
CANSAT80G0397 Cannabis sativa HOM05D000003 ORTHO05D000004 2.8e-23 112.5 145 40.0
CANSAT01G0401 Cannabis sativa HOM05D000003 ORTHO05D000283 6.2e-23 111.3 122 40.2
CANSAT56G2913 Cannabis sativa HOM05D000003 ORTHO05D000283 3.4e-21 105.5 145 38.6
CANSAT54G0583 Cannabis sativa HOM05D000003 ORTHO05D000283 4.4e-21 105.1 117 39.3
CANSAT80G2572 Cannabis sativa HOM05D000003 ORTHO05D000283 4.4e-21 105.1 106 39.6
CANSAT11G1846 Cannabis sativa HOM05D000003 ORTHO05D000283 2.2e-20 102.8 134 39.6
CANSAT35G0149 Cannabis sativa HOM05D000003 ORTHO05D000283 3.8e-20 102.1 142 35.2
CANSAT35G0062 Cannabis sativa HOM05D000003 ORTHO05D000283 6.4e-20 101.3 143 38.5
CANSAT54G1864 Cannabis sativa HOM05D000003 ORTHO05D000004 1.9e-19 99.8 137 40.1
CANSAT21G2619 Cannabis sativa HOM05D000003 ORTHO05D000004 2.4e-19 99.4 137 38.7
CANSAT64G2638 Cannabis sativa HOM05D000003 ORTHO05D000283 2.1e-18 96.3 101 42.6
Ah.15g096670 Amaranthus hybridus HOM05D000003 ORTHO05D000283 2.3e-17 92.8 129 33.3
CANSAT21G1308 Cannabis sativa HOM05D000003 ORTHO05D000283 3.9e-17 92.0 137 34.3
CANSAT21G1371 Cannabis sativa HOM05D000003 ORTHO05D000283 5.1e-17 91.7 127 33.1
CANSAT21G0124 Cannabis sativa HOM05D000003 ORTHO05D000004 8.7e-17 90.9 111 37.8
CANSAT35G0602 Cannabis sativa HOM05D000003 ORTHO05D000004 8.7e-17 90.9 96 39.6
CANSAT35G0552 Cannabis sativa HOM05D000003 ORTHO05D000004 1.9e-16 89.7 97 42.3
Peaxi162Scf00225g00086 Petunia axillaris HOM05D000003 ORTHO05D000004 1.9e-16 89.7 139 31.7
CANSAT11G1305 Cannabis sativa HOM05D000003 ORTHO05D000004 1.3e-15 87.0 95 34.7
AUR62033088 Chenopodium quinoa HOM05D000003 ORTHO05D000283 1.6e-15 86.7 137 29.2
CANSAT56G0847 Cannabis sativa HOM05D000003 ORTHO05D000283 2.8e-15 85.9 106 39.6
CANSAT21G2227 Cannabis sativa HOM05D000003 ORTHO05D000004 1.8e-14 83.2 99 43.4
CANSAT54G1632 Cannabis sativa HOM05D000003 ORTHO05D000283 3.1e-14 82.4 102 35.3
CANSAT11G0770 Cannabis sativa HOM05D000003 ORTHO05D000004 5.3e-14 81.6 91 37.4
CANSAT21G0242 Cannabis sativa HOM05D000003 ORTHO05D000004 5.3e-14 81.6 137 29.9
Peaxi162Scf00118g00214 Petunia axillaris HOM05D000003 ORTHO05D000006 5.3e-14 81.6 138 29.0
CANSAT11G1805 Cannabis sativa HOM05D000003 ORTHO05D000004 1.2e-13 80.5 144 31.9
CANSAT11G1254 Cannabis sativa HOM05D000003 ORTHO05D000004 2.0e-13 79.7 79 44.3
Ah.11g047370 Amaranthus hybridus HOM05D000003 ORTHO05D000004 3.4e-13 79.0 129 29.5
Peaxi162Scf00000g59005 Petunia axillaris HOM05D000003 ORTHO05D000283 3.4e-13 79.0 143 30.8
CANSAT21G2448 Cannabis sativa HOM05D000003 ORTHO05D000004 3.8e-12 75.5 83 39.8
CANSAT54G0647 Cannabis sativa HOM05D000003 ORTHO05D000004 8.4e-12 74.3 76 40.8
Nitab4.5_0003715g0080 Nicotiana tabacum HOM05D000003 ORTHO05D000283 8.4e-12 74.3 132 34.1
Peaxi162Scf00030g00212 Petunia axillaris HOM05D000003 ORTHO05D000283 1.9e-11 73.2 133 29.3
Oeu003864.1 Olea europaea HOM05D000003 ORTHO05D000283 2.4e-11 72.8 131 31.3
Ah.13g072870 Amaranthus hybridus HOM05D019857 ORTHO05D006942 4.2e-11 72.0 127 27.6
CANSAT56G2611 Cannabis sativa HOM05D000003 ORTHO05D000004 7.1e-11 71.2 68 39.7
Oeu004429.1 Olea europaea HOM05D000003 ORTHO05D000004 1.2e-10 70.5 134 31.3
Oeu062739.1 Olea europaea HOM05D007779 ORTHO05D009863 1.6e-10 70.1 132 32.6
Oeu060290.1 Olea europaea HOM05D000003 ORTHO05D000004 3.5e-10 68.9 134 30.6
PGSC0003DMG400005322 Solanum tuberosum HOM05D000003 ORTHO05D000283 4.6e-10 68.6 101 36.6
CANSAT21G1862 Cannabis sativa HOM05D000003 ORTHO05D000004 1.3e-09 67.0 53 50.9
PGSC0003DMG400031219 Solanum tuberosum HOM05D000003 ORTHO05D000283 1.3e-09 67.0 101 36.6
Peaxi162Scf00167g00211 Petunia axillaris HOM05D000003 ORTHO05D000283 3.9e-09 65.5 111 25.2
Rhsim10G0040700 Rhododendron simsii HOM05D000068 ORTHO05D000084 3.9e-09 65.5 143 28.7
ECA233G4110 Erigeron canadensis HOM05D000003 ORTHO05D000004 6.7e-09 64.7 136 27.9
Nitab4.5_0005313g0020 Nicotiana tabacum HOM05D000003 ORTHO05D000283 1.1e-08 63.9 114 28.1
BraA05t22446Z Brassica rapa HOM05D000003 ORTHO05D000283 1.5e-08 63.5 149 29.5
Dinv05579 Davidia involucrata HOM05D000003 ORTHO05D000283 1.9e-08 63.2 115 28.7
Ah.03g142580 Amaranthus hybridus HOM05D000003 ORTHO05D000004 2.5e-08 62.8 125 28.8
Ah.14g081210 Amaranthus hybridus HOM05D034646 ORTHO05D000283 3.3e-08 62.4 125 28.8
CANSAT21G0251 Cannabis sativa HOM05D000003 ORTHO05D000004 3.3e-08 62.4 83 34.9
CANSAT54G2842 Cannabis sativa HOM05D000084 ORTHO05D002966 3.3e-08 62.4 64 45.3
ECA246G5223 Erigeron canadensis HOM05D000003 ORTHO05D000283 3.3e-08 62.4 143 25.9
BcaC07g42553 Brassica carinata HOM05D000003 ORTHO05D000283 4.3e-08 62.0 132 31.1
Nitab4.5_0001821g0070 Nicotiana tabacum HOM05D000003 ORTHO05D000283 4.3e-08 62.0 140 26.4
CANSAT64G0624 Cannabis sativa HOM05D000003 ORTHO05D000283 7.4e-08 61.2 135 26.7
CANSAT64G1340 Cannabis sativa HOM05D000003 ORTHO05D000283 7.4e-08 61.2 120 29.2
BcaB06g28417 Brassica carinata HOM05D000003 ORTHO05D000283 1.3e-07 60.5 118 26.3
PGSC0003DMG400029210 Solanum tuberosum HOM05D000003 ORTHO05D000283 1.3e-07 60.5 117 29.9
CANSAT21G2126 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-07 60.1 53 43.4
Nitab4.5_0010596g0010 Nicotiana tabacum HOM05D000003 ORTHO05D000283 1.6e-07 60.1 101 33.7
Sopen07g029140 Solanum pennellii HOM05D000003 ORTHO05D000283 1.6e-07 60.1 118 25.4
SGA_v2.0_scaffold25G10969 Striga asiatica HOM05D002610 ORTHO05D002926 1.6e-07 60.1 137 25.5
CANSAT21G0019 Cannabis sativa HOM05D000003 ORTHO05D000004 2.1e-07 59.7 140 28.6
Oeu025341.1 Olea europaea HOM05D000003 ORTHO05D000283 2.1e-07 59.7 120 28.3
Gorai.013G240100 Gossypium raimondii HOM05D008457 ORTHO05D011002 2.8e-07 59.3 117 27.4
Potri.016G103750 Populus trichocarpa HOM05D000003 ORTHO05D000283 2.8e-07 59.3 123 32.5
Ah.14g079400 Amaranthus hybridus HOM05D000003 ORTHO05D000283 3.7e-07 58.9 102 29.4
Duzib150G0793 Durio zibethinus HOM05D000003 ORTHO05D000283 3.7e-07 58.9 132 28.8
Oeu041237.1 Olea europaea HOM05D000003 ORTHO05D000283 3.7e-07 58.9 119 26.9
CANSAT01G2501 Cannabis sativa HOM05D000003 ORTHO05D000004 4.8e-07 58.5 120 29.2
CANSAT35G1265 Cannabis sativa HOM05D000003 ORTHO05D000004 4.8e-07 58.5 122 27.9
Nitab4.5_0000559g0420 Nicotiana tabacum HOM05D000003 ORTHO05D000283 4.8e-07 58.5 118 27.1
Nitab4.5_0002020g0010 Nicotiana tabacum HOM05D000003 ORTHO05D000283 6.2e-07 58.2 118 26.3
Nitab4.5_0006995g0050 Nicotiana tabacum HOM05D032030 ORTHO05D036891 6.2e-07 58.2 62 41.9
EL10Ac6g14728 Beta vulgaris HOM05D000003 ORTHO05D000283 8.1e-07 57.8 129 27.9
Carub.0005s2988 Capsella rubella HOM05D000003 ORTHO05D000283 8.1e-07 57.8 152 26.3
Nitab4.5_0002818g0050 Nicotiana tabacum HOM05D000003 ORTHO05D000283 8.1e-07 57.8 129 28.7
vmacro13150 Vaccinium macrocarpon HOM05D000751 ORTHO05D000889 8.1e-07 57.8 135 27.4
ECA234G1739 Erigeron canadensis HOM05D000003 ORTHO05D000283 1.1e-06 57.4 136 30.9
Nitab4.5_0002772g0020 Nicotiana tabacum HOM05D000003 ORTHO05D000283 1.1e-06 57.4 114 25.4
Sopen12g026800 Solanum pennellii HOM05D000003 ORTHO05D000004 1.1e-06 57.4 128 31.2
PSO170G0824 Papaver somniferum HOM05D000003 ORTHO05D000004 1.4e-06 57.0 132 29.5
CANSAT54G0027 Cannabis sativa HOM05D000003 ORTHO05D000283 1.8e-06 56.6 116 25.0
CANSAT80G0260 Cannabis sativa HOM05D000003 ORTHO05D000004 1.8e-06 56.6 70 34.3
HanXRQChr17g0535871 Helianthus annuus HOM05D000003 ORTHO05D000004 1.8e-06 56.6 119 29.4
Carub.0003s3092 Capsella rubella HOM05D000003 ORTHO05D000283 2.4e-06 56.2 130 28.5
vmacro10184 Vaccinium macrocarpon HOM05D000049 ORTHO05D000283 2.4e-06 56.2 125 28.8
Aa31LG6G10530 Aethionema arabicum HOM05D000003 ORTHO05D000283 3.1e-06 55.8 140 24.3
Aqoxy5G02827 Aquilegia oxysepala HOM05D000003 ORTHO05D000283 3.1e-06 55.8 122 27.9
BcaC07g38922 Brassica carinata HOM05D000003 ORTHO05D000283 3.1e-06 55.8 121 28.1
CANSAT80G2822 Cannabis sativa HOM05D000003 ORTHO05D000004 3.1e-06 55.8 122 29.5
Carub.0001s4199 Capsella rubella HOM05D000003 ORTHO05D000283 3.1e-06 55.8 122 27.0
Psat1g080800 Pisum sativum HOM05D000003 ORTHO05D000004 3.1e-06 55.8 100 31.0
BcaC09g49882 Brassica carinata HOM05D000003 ORTHO05D000283 4.0e-06 55.5 126 26.2
Carub.0003s2082 Capsella rubella HOM05D000003 ORTHO05D000283 4.0e-06 55.5 122 27.0
Nitab4.5_0001488g0080 Nicotiana tabacum HOM05D000003 ORTHO05D000283 4.0e-06 55.5 122 30.3
Nitab4.5_0006217g0020 Nicotiana tabacum HOM05D000003 ORTHO05D000283 4.0e-06 55.5 130 28.5
Oeu033518.1 Olea europaea HOM05D000003 ORTHO05D000283 4.0e-06 55.5 119 26.1
BraA05t20748Z Brassica rapa HOM05D000003 ORTHO05D000283 5.3e-06 55.1 101 32.7
HanXRQChr05g0129651 Helianthus annuus HOM05D000003 ORTHO05D002335 5.3e-06 55.1 123 30.1
Sopen00g013340 Solanum pennellii HOM05D000003 ORTHO05D000004 5.3e-06 55.1 142 26.1
Sopen02g001330 Solanum pennellii HOM05D000003 ORTHO05D000004 5.3e-06 55.1 140 25.0
AL2G10360 Arabidopsis lyrata HOM05D000003 ORTHO05D000004 6.9e-06 54.7 120 29.2
BcaC07g42435 Brassica carinata HOM05D000003 ORTHO05D000283 6.9e-06 54.7 131 28.2
Psat2g089560 Pisum sativum HOM05D000003 ORTHO05D000004 6.9e-06 54.7 101 35.6
Psat2g176280 Pisum sativum HOM05D000003 ORTHO05D000283 6.9e-06 54.7 101 35.6
Psat4g073240 Pisum sativum HOM05D000003 ORTHO05D000283 6.9e-06 54.7 101 35.6
Psat5g282280 Pisum sativum HOM05D000003 ORTHO05D000283 6.9e-06 54.7 101 35.6
Sopen00g004700 Solanum pennellii HOM05D000003 ORTHO05D000004 6.9e-06 54.7 126 27.8
THA.LOC104815125 Tarenaya hassleriana HOM05D000003 ORTHO05D000283 6.9e-06 54.7 123 26.8
Aqoxy1G03699 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 9.0e-06 54.3 129 26.4
Aqoxy2G01405 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 9.0e-06 54.3 125 26.4
Aqoxy7G02093 Aquilegia oxysepala HOM05D008675 ORTHO05D000004 9.0e-06 54.3 123 26.8
BraA02t06658Z Brassica rapa HOM05D000003 ORTHO05D000283 9.0e-06 54.3 130 26.9
ECA234G3413 Erigeron canadensis HOM05D000003 ORTHO05D000004 9.0e-06 54.3 134 27.6


User provided reference genes

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