Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G0326 Cannabis sativa HOM05D006253 ORTHO05D007666 6.2e-86 320.9 172 100.0
CANSAT35G0887 Cannabis sativa HOM05D006253 ORTHO05D007666 5.2e-85 317.8 172 99.4
Gohir.A01G006900 Gossypium hirsutum HOM05D006253 ORTHO05D007666 4.1e-74 281.6 172 84.9
COL.COLO4_32658 Corchorus olitorius HOM05D006253 ORTHO05D007666 9.2e-74 280.4 172 84.9
Gorai.002G008000 Gossypium raimondii HOM05D006253 ORTHO05D007666 1.6e-73 279.6 172 84.3
Thecc.02G100600 Theobroma cacao HOM05D006253 ORTHO05D007666 3.5e-73 278.5 172 84.3
Prupe.8G124200 Prunus persica HOM05D006253 ORTHO05D007666 1.3e-72 276.6 174 84.5
Gohir.D01G007000 Gossypium hirsutum HOM05D006253 ORTHO05D007666 3.9e-72 275.0 172 83.1
MD05G1080500 Malus domestica HOM05D006253 ORTHO05D007666 7.3e-71 270.8 173 82.7
RcHm_v2.0_Chr6g0257111 Rosa chinensis HOM05D006253 ORTHO05D007666 9.5e-71 270.4 174 81.6
QL11p035967 Quercus lobata HOM05D006253 ORTHO05D007666 1.2e-70 270.0 171 81.3
FvH4_2g06110 Fragaria vesca HOM05D006253 ORTHO05D007666 6.2e-70 267.7 174 81.0
FAN24G2487 Fragaria x ananassa HOM05D006253 ORTHO05D007666 6.2e-70 267.7 174 81.0
arahy.Tifrunner.gnm1.ann1.ETD7FQ Arachis hypogaea HOM05D006253 ORTHO05D007666 1.4e-69 266.5 172 79.7
Ciclev10029390m.g Citrus clementina HOM05D006253 ORTHO05D007666 1.8e-69 266.2 173 80.9
Potri.004G141400 Populus trichocarpa HOM05D006253 ORTHO05D007666 1.8e-69 266.2 173 80.3
Manes.01G064000 Manihot esculenta HOM05D006253 ORTHO05D007666 2.3e-69 265.8 172 80.8
Sabra04G0093200 Salix brachista HOM05D006253 ORTHO05D007666 2.3e-69 265.8 173 79.8
Lj6g0019810 Lotus japonicus HOM05D006253 ORTHO05D007666 3.1e-69 265.4 172 80.2
GSVIVG01031749001 Vitis vinifera HOM05D006253 ORTHO05D007666 4.0e-69 265.0 172 79.7
TAR376G0695 Trochodendron aralioides HOM05D006253 ORTHO05D007666 6.8e-69 264.2 172 80.8
FAN27G3246 Fragaria x ananassa HOM05D006253 ORTHO05D007666 8.9e-69 263.8 180 78.9
Lj5C209T13 Lonicera japonica HOM05D006253 ORTHO05D007666 8.9e-69 263.8 172 79.1
MELO3C019508.2 Cucumis melo HOM05D006253 ORTHO05D007666 1.2e-68 263.5 172 79.7
Glyma.04G194000 Glycine max HOM05D006253 ORTHO05D007666 1.2e-68 263.5 172 80.2
Nn5g30328 Nelumbo nucifera HOM05D006253 ORTHO05D007666 1.2e-68 263.5 172 79.7
Sed0027718 Sechium edule HOM05D006253 ORTHO05D007666 1.2e-68 263.5 172 79.7
Sc14g0002650 Simmondsia chinensis HOM05D006253 ORTHO05D007666 1.2e-68 263.5 172 77.9
CiPaw.05G006400 Carya illinoinensis HOM05D006253 ORTHO05D007666 3.4e-68 261.9 172 77.9
Actinidia12952 Actinidia chinensis HOM05D006253 ORTHO05D007666 4.4e-68 261.5 173 80.9
VMungo1080G0444 Vigna mungo HOM05D006253 ORTHO05D007666 7.6e-68 260.8 172 78.5
Lalb_Chr25g0286231 Lupinus albus HOM05D006253 ORTHO05D007666 6.4e-67 257.7 172 75.6
CsaV3_3G018580 Cucumis sativus L. HOM05D006253 ORTHO05D007666 8.4e-67 257.3 172 77.9
Rhsim03G0192100 Rhododendron simsii HOM05D006253 ORTHO05D007666 8.4e-67 257.3 172 77.9
Ca_15796_v3 Cicer arietinum L. HOM05D006253 ORTHO05D007666 1.1e-66 256.9 172 78.5
Ca_30406_v3 Cicer arietinum L. HOM05D006253 ORTHO05D007666 1.1e-66 256.9 172 78.5
Hma1.2p1_0370F.1_g137800 Hydrangea macrophylla HOM05D006253 ORTHO05D007666 1.9e-66 256.1 172 77.9
arahy.Tifrunner.gnm1.ann1.AJN977 Arachis hypogaea HOM05D006253 ORTHO05D007666 5.4e-66 254.6 172 76.2
THA.LOC104807358 Tarenaya hassleriana HOM05D006253 ORTHO05D007666 5.4e-66 254.6 173 76.9
Phvul.005G182700 Phaseolus vulgaris HOM05D006253 ORTHO05D007666 1.2e-65 253.4 172 76.2
TPR.G19178 Trifolium pratense HOM05D006253 ORTHO05D007666 4.6e-65 251.5 172 76.2
PGR142G1116 Punica granatum HOM05D006253 ORTHO05D007666 7.8e-65 250.8 173 75.7
TPR.G19494 Trifolium pratense HOM05D006253 ORTHO05D007666 7.8e-65 250.8 171 77.8
Rhsim05G0084000 Rhododendron simsii HOM05D006253 ORTHO05D007666 1.3e-64 250.0 181 74.6
SGA_v2.0_scaffold22G09667 Striga asiatica HOM05D006253 ORTHO05D007666 1.7e-64 249.6 172 77.3
EL10Ac5g11497 Beta vulgaris HOM05D006253 ORTHO05D007666 3.0e-64 248.8 172 75.6
CAN.G1041.15 Capsicum annuum HOM05D006253 ORTHO05D007666 3.0e-64 248.8 172 75.0
Sopen01g050480 Solanum pennellii HOM05D006253 ORTHO05D007666 3.0e-64 248.8 172 75.6
TWI79G0152 Tripterygium wilfordii HOM05D006253 ORTHO05D007666 3.0e-64 248.8 173 75.7
Ca_01013_v3 Cicer arietinum L. HOM05D006253 ORTHO05D007666 3.9e-64 248.4 170 74.7
PGSC0003DMG400025894 Solanum tuberosum HOM05D006253 ORTHO05D007666 3.9e-64 248.4 172 75.6
arahy.Tifrunner.gnm1.ann1.5N1458 Arachis hypogaea HOM05D006253 ORTHO05D007666 8.6e-64 247.3 193 69.4
Eucgr.I01155 Eucalyptus grandis HOM05D006253 ORTHO05D007666 8.6e-64 247.3 173 75.7
Lsat_1_v5_gn_5_112681 Lactuca sativa HOM05D006253 ORTHO05D007666 4.7e-62 241.5 169 71.0
Oeu010588.1 Olea europaea HOM05D006253 ORTHO05D007666 1.8e-61 239.6 172 73.3
PSO782G1871 Papaver somniferum HOM05D006253 ORTHO05D007666 1.8e-61 239.6 167 74.9
Duzib052G0633 Durio zibethinus HOM05D006253 ORTHO05D007666 2.4e-61 239.2 144 86.8
HanXRQChr16g0501301 Helianthus annuus HOM05D006253 ORTHO05D007666 2.4e-61 239.2 172 70.9
Sp7g32200 Schrenkiella parvula HOM05D006253 ORTHO05D007666 4.0e-61 238.4 173 74.0
MSTRG.27724 Avicennia marina HOM05D006253 ORTHO05D007666 1.5e-60 236.5 172 72.7
AT4G34412 Arabidopsis thaliana HOM05D006253 ORTHO05D007666 3.4e-60 235.3 173 72.3
BcaNung06978 Brassica carinata HOM05D006253 ORTHO05D007666 4.4e-60 235.0 173 73.4
A01p04020 Brassica napus HOM05D006253 ORTHO05D007666 4.4e-60 235.0 173 74.0
BraA03t15367Z Brassica rapa HOM05D006253 ORTHO05D007666 4.4e-60 235.0 173 73.4
Carub.0007s0590 Capsella rubella HOM05D006253 ORTHO05D007666 5.8e-60 234.6 173 71.1
Thhalv10026394m.g Eutrema salsugineum HOM05D006253 ORTHO05D007666 5.8e-60 234.6 173 71.7
HPP92_001047 Vanilla planifolia HOM05D006253 ORTHO05D007666 9.9e-60 233.8 172 70.9
CARHR242350 Cardamine hirsuta HOM05D006253 ORTHO05D007666 1.3e-59 233.4 173 71.1
ECA234G4670 Erigeron canadensis HOM05D006253 ORTHO05D007666 1.3e-59 233.4 172 69.2
arahy.Tifrunner.gnm1.ann1.1E2X9I Arachis hypogaea HOM05D006253 ORTHO05D007666 1.7e-59 233.0 150 80.0
AL7G16840 Arabidopsis lyrata HOM05D006253 ORTHO05D007666 4.9e-59 231.5 173 71.7
C07p60590 Brassica napus HOM05D006253 ORTHO05D007666 6.4e-59 231.1 173 71.7
Medtr8g099835 Medicago truncatula HOM05D006253 ORTHO05D007666 1.1e-58 230.3 149 79.9
Aa31LG2G16330 Aethionema arabicum HOM05D006253 ORTHO05D007666 2.4e-58 229.2 173 71.1
MBI02_g02992_MAGBIO Magnolia biondii HOM05D006253 ORTHO05D007666 1.2e-57 226.9 144 84.0
Os01g0142200 Oryza sativa ssp. japonica HOM05D006253 ORTHO05D007666 1.2e-57 226.9 173 69.9
Zm00001eb124670 Zea mays HOM05D006253 ORTHO05D007666 1.3e-56 223.4 173 68.8
Glyma.06G172100 Glycine max HOM05D006253 ORTHO05D007666 3.9e-56 221.9 143 76.9
Psat5g098280 Pisum sativum HOM05D006253 ORTHO05D007666 3.9e-56 221.9 144 80.6
CSS0003209 Camellia sinensis var. sinensis HOM05D006253 ORTHO05D007666 5.1e-56 221.5 141 80.1
PSO478G4849 Papaver somniferum HOM05D006253 ORTHO05D007666 3.3e-55 218.8 144 80.6
Atru.chr5.2705 Acer truncatum HOM05D006253 ORTHO05D007666 2.8e-54 215.7 173 71.1
CDE08G0295 Ceratophyllum demersum HOM05D006253 ORTHO05D007666 4.8e-54 214.9 143 78.3
Solyc01g108260.4 Solanum lycopersicum HOM05D006253 ORTHO05D007666 4.8e-54 214.9 149 75.8
FAN20G2826 Fragaria x ananassa HOM05D006253 ORTHO05D007666 1.8e-53 213.0 172 68.0
Sed0021593 Sechium edule HOM05D006253 ORTHO05D007666 1.2e-52 210.3 172 65.7
DCAR_007862 Daucus carota HOM05D006253 ORTHO05D007666 3.4e-52 208.8 144 75.0
HanXRQChr10g0319791 Helianthus annuus HOM05D006253 ORTHO05D007666 9.9e-52 207.2 150 72.7
Mapoly0083s0082 Marchantia polymorpha HOM05D006253 ORTHO05D007666 9.9e-52 207.2 165 63.6
AagrBONN_evm.TU.Sc2ySwM_344.4457 Anthoceros agrestis HOM05D006253 ORTHO05D007666 1.7e-51 206.5 165 61.2
BolC7t46489H Brassica oleracea HOM05D003825 ORTHO05D004491 3.8e-51 205.3 150 73.3
Pp3c22_3990 Physcomitrium patens HOM05D006253 ORTHO05D007666 6.7e-48 194.5 165 58.8
SMO351G0094 Selaginella moellendorffii HOM05D006253 ORTHO05D007666 8.7e-48 194.1 172 59.3
Hund00335 Selenicereus undatus HOM05D006253 ORTHO05D007666 5.6e-47 191.4 172 62.8
FAN15G3440 Fragaria x ananassa HOM05D006253 ORTHO05D007666 4.0e-45 185.3 172 62.8
CBR_g38557 Chara braunii HOM05D006253 ORTHO05D007666 7.9e-41 171.0 165 52.7
AUR62029937 Chenopodium quinoa HOM05D006253 ORTHO05D007666 2.5e-39 166.0 120 69.2
Phvul.002G266500 Phaseolus vulgaris HOM05D006253 ORTHO05D007666 6.2e-38 161.4 111 75.7
BolC1t00422H Brassica oleracea HOM05D006253 ORTHO05D007666 8.2e-38 161.0 116 74.1
AUR62033746 Chenopodium quinoa HOM05D006253 ORTHO05D007666 4.0e-37 158.7 144 62.5
SEGI_00233 Sequoiadendron giganteum HOM05D006253 ORTHO05D007666 1.2e-36 157.1 117 66.7
MD10G1094500 Malus domestica HOM05D006253 ORTHO05D007666 3.4e-36 155.6 101 80.2
CSS0033941 Camellia sinensis var. sinensis HOM05D006253 ORTHO05D007666 1.3e-35 153.7 139 67.6
Medtr2g105210 Medicago truncatula HOM05D006253 ORTHO05D007666 3.2e-34 149.1 123 66.7
C01p04340 Brassica napus HOM05D006253 ORTHO05D007666 1.6e-33 146.7 99 77.8
Cre01.g030950 Chlamydomonas reinhardtii HOM05D006253 ORTHO05D007666 5.3e-29 131.7 165 43.6
Prupe.4G258000 Prunus persica HOM05D006253 ORTHO05D007666 2.0e-28 129.8 115 62.6
Prupe.6G016400 Prunus persica HOM05D006253 ORTHO05D007666 3.4e-28 129.0 128 60.9
MCO10G211 Micromonas commoda HOM05D006253 ORTHO05D007666 3.8e-27 125.6 160 44.4
A03p62890 Brassica napus HOM05D000211 ORTHO05D007666 3.2e-26 122.5 136 54.4
Cc02_g18770 Coffea canephora HOM05D006253 ORTHO05D007666 1.2e-25 120.6 89 70.8
vmacro19500 Vaccinium macrocarpon HOM05D006253 ORTHO05D007666 1.6e-25 120.2 164 50.6
Gorai.005G238200 Gossypium raimondii HOM05D006253 ORTHO05D007666 2.7e-25 119.4 104 60.6
PRCOL_00001305 Prasinoderma coloniale HOM05D006253 ORTHO05D007666 1.1e-23 114.0 177 41.2
Ah.10g034240 Amaranthus hybridus HOM05D006253 ORTHO05D007666 4.8e-22 108.6 86 67.4
SalBow3G2580 Salvia bowleyana HOM05D006253 ORTHO05D007666 6.3e-22 108.2 120 52.5
vmacro06019 Vaccinium macrocarpon HOM05D006253 ORTHO05D007666 6.3e-22 108.2 95 65.3
Gohir.D02G210201 Gossypium hirsutum HOM05D006253 ORTHO05D007666 2.2e-19 99.8 104 54.8
ClCG05G009990 Citrullus lanatus HOM05D006253 ORTHO05D007666 5.0e-19 98.6 115 53.0
Sabra09G0078100 Salix brachista HOM05D006253 ORTHO05D007666 8.5e-19 97.8 86 67.4
Hma1.2p1_0804F.1_g221060 Hydrangea macrophylla HOM05D006253 ORTHO05D007666 5.5e-18 95.1 71 73.2
Prupe.4G259300 Prunus persica HOM05D006253 ORTHO05D007666 2.4e-13 79.7 86 54.7
Oeu025576.2 Olea europaea HOM05D006253 ORTHO05D007666 3.1e-13 79.3 63 68.3
Prupe.2G172700 Prunus persica HOM05D006253 ORTHO05D007666 5.3e-13 78.6 51 80.4
Aqoxy5G01240 Aquilegia oxysepala HOM05D006253 ORTHO05D007666 1.7e-11 73.6 57 61.4
Hma1.2p1_0674F.1_g201500 Hydrangea macrophylla HOM05D006253 ORTHO05D007666 2.9e-11 72.8 58 70.7
Migut.N01188 Erythranthe guttata HOM05D006253 ORTHO05D007666 6.5e-11 71.6 59 66.1
SEGI_00525 Sequoiadendron giganteum HOM05D006253 ORTHO05D007666 1.6e-09 67.0 58 60.3
Migut.N01189 Erythranthe guttata HOM05D006253 ORTHO05D007666 1.8e-08 63.5 47 68.1


User provided reference genes

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