Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G0211 Cannabis sativa HOM05D003847 ORTHO05D004976 4.4e-43 177.6 90 100.0
CANSAT25G3593 Cannabis sativa HOM05D003847 ORTHO05D004976 1.4e-36 156.0 79 96.2
CANSAT56G2934 Cannabis sativa HOM05D003847 ORTHO05D004976 1.4e-36 156.0 86 91.9
Hma1.2p1_0627F.1_g191710 Hydrangea macrophylla HOM05D003847 ORTHO05D004976 6.4e-34 147.1 87 81.6
QL04p055042 Quercus lobata HOM05D003847 ORTHO05D004976 1.1e-33 146.4 86 83.7
Duzib133G1387 Durio zibethinus HOM05D003847 ORTHO05D004976 1.9e-33 145.6 86 83.7
Thecc.01G354200 Theobroma cacao HOM05D003847 ORTHO05D004976 1.9e-33 145.6 86 83.7
Potri.014G088900 Populus trichocarpa HOM05D003847 ORTHO05D004976 2.4e-33 145.2 86 83.7
Oeu036597.2 Olea europaea HOM05D003847 ORTHO05D004976 3.2e-33 144.8 87 80.5
COL.COLO4_12761 Corchorus olitorius HOM05D003847 ORTHO05D004976 4.1e-33 144.4 86 82.6
Ciclev10020054m.g Citrus clementina HOM05D003847 ORTHO05D004976 5.4e-33 144.1 86 80.2
Cc02_g38410 Coffea canephora HOM05D003847 ORTHO05D004976 5.4e-33 144.1 87 79.3
Duzib138G0396 Durio zibethinus HOM05D003847 ORTHO05D004976 5.4e-33 144.1 86 81.4
Sabra14G0064600 Salix brachista HOM05D003847 ORTHO05D004976 5.4e-33 144.1 86 82.6
Gohir.A11G091500 Gossypium hirsutum HOM05D003847 ORTHO05D004976 7.0e-33 143.7 86 82.6
Gorai.007G102500 Gossypium raimondii HOM05D003847 ORTHO05D004976 7.0e-33 143.7 86 82.6
Nitab4.5_0003779g0180 Nicotiana tabacum HOM05D003847 ORTHO05D004976 7.0e-33 143.7 87 80.5
vmacro20904 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 7.0e-33 143.7 86 81.4
Dinv32510 Davidia involucrata HOM05D003847 ORTHO05D004976 9.2e-33 143.3 86 82.6
Dinv43851 Davidia involucrata HOM05D003847 ORTHO05D004976 9.2e-33 143.3 87 79.3
Lalb_Chr04g0259201 Lupinus albus HOM05D003847 ORTHO05D004976 9.2e-33 143.3 86 80.2
Manes.05G031000 Manihot esculenta HOM05D003847 ORTHO05D004976 9.2e-33 143.3 86 82.6
AL6G52080 Arabidopsis lyrata HOM05D003847 ORTHO05D004976 1.2e-32 142.9 86 80.2
AT4G01320 Arabidopsis thaliana HOM05D003847 ORTHO05D004976 1.2e-32 142.9 86 80.2
ClCG05G001330 Citrullus lanatus HOM05D003847 ORTHO05D004976 1.2e-32 142.9 86 81.4
Migut.N01455 Erythranthe guttata HOM05D003847 ORTHO05D004976 1.2e-32 142.9 86 81.4
MSTRG.28227 Avicennia marina HOM05D003847 ORTHO05D004976 1.6e-32 142.5 86 80.2
CSS0029735 Camellia sinensis var. sinensis HOM05D003847 ORTHO05D004976 1.6e-32 142.5 86 81.4
MELO3C006089.2 Cucumis melo HOM05D003847 ORTHO05D004976 1.6e-32 142.5 86 80.2
CsaV3_3G008710 Cucumis sativus L. HOM05D003847 ORTHO05D004976 1.6e-32 142.5 86 80.2
Oeu015226.2 Olea europaea HOM05D003847 ORTHO05D004976 1.6e-32 142.5 87 78.2
DCAR_008629 Daucus carota HOM05D003847 ORTHO05D004976 2.1e-32 142.1 85 80.0
Eucgr.D02317 Eucalyptus grandis HOM05D003847 ORTHO05D004976 2.1e-32 142.1 86 80.2
Glyma.18G237300 Glycine max HOM05D003847 ORTHO05D004976 2.1e-32 142.1 84 83.3
Gohir.A13G099905 Gossypium hirsutum HOM05D003847 ORTHO05D004976 2.1e-32 142.1 86 81.4
Potri.002G162700 Populus trichocarpa HOM05D003847 ORTHO05D004976 2.1e-32 142.1 87 81.6
HanXRQChr17g0562361 Helianthus annuus HOM05D003847 ORTHO05D004976 2.7e-32 141.7 87 78.2
Phvul.008G059300 Phaseolus vulgaris HOM05D003847 ORTHO05D004976 2.7e-32 141.7 84 82.1
Sed0024082 Sechium edule HOM05D003847 ORTHO05D004976 2.7e-32 141.7 86 80.2
VMungo1383G0817 Vigna mungo HOM05D003847 ORTHO05D004976 2.7e-32 141.7 84 82.1
Actinidia02826 Actinidia chinensis HOM05D003847 ORTHO05D004976 3.5e-32 141.4 86 79.1
Nitab4.5_0001702g0130 Nicotiana tabacum HOM05D003847 ORTHO05D004976 3.5e-32 141.4 87 79.3
Nitab4.5_0011900g0010 Nicotiana tabacum HOM05D003847 ORTHO05D004976 3.5e-32 141.4 87 80.5
Hund16669 Selenicereus undatus HOM05D003847 ORTHO05D004976 3.5e-32 141.4 87 78.2
GSVIVG01026981001 Vitis vinifera HOM05D003847 ORTHO05D004976 3.5e-32 141.4 86 81.4
Carub.0006s3638 Capsella rubella HOM05D003847 ORTHO05D004976 6.0e-32 140.6 86 79.1
Peaxi162Scf00020g01122 Petunia axillaris HOM05D003847 ORTHO05D004976 6.0e-32 140.6 86 80.2
Prupe.2G175500 Prunus persica HOM05D003847 ORTHO05D004976 6.0e-32 140.6 86 79.1
BcaB01g02281 Brassica carinata HOM05D003847 ORTHO05D004976 7.8e-32 140.2 86 77.9
CAN.G78.110 Capsicum annuum HOM05D003847 ORTHO05D004976 7.8e-32 140.2 87 79.3
Atru.chr12.614 Acer truncatum HOM05D003847 ORTHO05D004976 1.0e-31 139.8 86 77.9
BcaC04g24142 Brassica carinata HOM05D003847 ORTHO05D004976 1.0e-31 139.8 86 76.7
C09p00660 Brassica napus HOM05D003847 ORTHO05D004976 1.0e-31 139.8 86 76.7
FAN10G2219 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.0e-31 139.8 86 79.1
MD01G1069400 Malus domestica HOM05D003847 ORTHO05D004976 1.0e-31 139.8 87 78.2
Nitab4.5_0001269g0010 Nicotiana tabacum HOM05D003847 ORTHO05D004976 1.0e-31 139.8 87 79.3
Sed0007018 Sechium edule HOM05D003847 ORTHO05D004976 1.0e-31 139.8 86 79.1
Sopen01g038710 Solanum pennellii HOM05D003847 ORTHO05D004976 1.0e-31 139.8 87 79.3
THA.LOC104825858 Tarenaya hassleriana HOM05D003847 ORTHO05D004976 1.0e-31 139.8 86 77.9
Solyc01g094930.3 Solanum lycopersicum HOM05D003847 ORTHO05D004976 1.3e-31 139.4 87 78.2
Atru.chr5.547 Acer truncatum HOM05D003847 ORTHO05D004976 1.7e-31 139.0 86 79.1
Gohir.D11G096200 Gossypium hirsutum HOM05D003847 ORTHO05D004976 1.7e-31 139.0 86 80.2
CARHR249000 Cardamine hirsuta HOM05D003847 ORTHO05D004976 2.3e-31 138.7 86 77.9
Glyma.09G255600 Glycine max HOM05D003847 ORTHO05D004976 2.3e-31 138.7 84 79.8
THA.LOC104817033 Tarenaya hassleriana HOM05D003847 ORTHO05D004976 2.3e-31 138.7 86 77.9
Lsat_1_v5_gn_4_34641 Lactuca sativa HOM05D003847 ORTHO05D004976 3.0e-31 138.3 87 74.7
Medtr7g078760 Medicago truncatula HOM05D003847 ORTHO05D004976 3.0e-31 138.3 85 77.6
PGR042G1058 Punica granatum HOM05D003847 ORTHO05D004976 3.0e-31 138.3 86 77.9
SGA_v2.0_scaffold43G16402 Striga asiatica HOM05D003847 ORTHO05D004976 3.0e-31 138.3 86 76.7
Aa31LG5G720 Aethionema arabicum HOM05D003847 ORTHO05D004976 3.9e-31 137.9 86 77.9
CiPaw.01G065300 Carya illinoinensis HOM05D003847 ORTHO05D004976 3.9e-31 137.9 86 80.2
AUR62004399 Chenopodium quinoa HOM05D003847 ORTHO05D004976 3.9e-31 137.9 86 77.9
Ca_00820_v3 Cicer arietinum L. HOM05D003847 ORTHO05D004976 3.9e-31 137.9 84 81.0
Sp6g00820 Schrenkiella parvula HOM05D003847 ORTHO05D004976 3.9e-31 137.9 86 79.1
BcaB01g02153 Brassica carinata HOM05D003847 ORTHO05D004976 5.1e-31 137.5 86 77.9
BcaC01g06856 Brassica carinata HOM05D003847 ORTHO05D004976 5.1e-31 137.5 86 77.9
C03p39000 Brassica napus HOM05D003847 ORTHO05D004976 5.1e-31 137.5 86 77.9
BolC3t16172H Brassica oleracea HOM05D003847 ORTHO05D004976 5.1e-31 137.5 86 77.9
BolC9t53000H Brassica oleracea HOM05D003847 ORTHO05D004976 5.1e-31 137.5 86 75.6
Thhalv10028603m.g Eutrema salsugineum HOM05D003847 ORTHO05D004976 5.1e-31 137.5 86 77.9
Aqoxy5G04080 Aquilegia oxysepala HOM05D003847 ORTHO05D004976 6.6e-31 137.1 86 79.1
ECA234G3268 Erigeron canadensis HOM05D003847 ORTHO05D004976 6.6e-31 137.1 87 74.7
Lj1g0024026 Lotus japonicus HOM05D003847 ORTHO05D004976 6.6e-31 137.1 86 75.6
Nn1g01640 Nelumbo nucifera HOM05D003847 ORTHO05D004976 6.6e-31 137.1 86 76.7
Os02g0680400 Oryza sativa ssp. japonica HOM05D003847 ORTHO05D004976 6.6e-31 137.1 86 77.9
Psat3g106680 Pisum sativum HOM05D003847 ORTHO05D004976 6.6e-31 137.1 84 79.8
Haze_15549 Corylus avellana HOM05D003847 ORTHO05D004976 8.6e-31 136.7 86 80.2
DCAR_025211 Daucus carota HOM05D003847 ORTHO05D004976 8.6e-31 136.7 86 75.6
FAN10G1372 Fragaria x ananassa HOM05D003847 ORTHO05D004976 8.6e-31 136.7 86 77.9
Zm00001eb187240 Zea mays HOM05D003847 ORTHO05D004976 8.6e-31 136.7 86 77.9
Atru.chr5.1381 Acer truncatum HOM05D003847 ORTHO05D004976 1.1e-30 136.3 86 76.7
arahy.Tifrunner.gnm1.ann1.9YV9D4 Arachis hypogaea HOM05D003847 ORTHO05D004976 1.1e-30 136.3 86 75.6
MBI04_g26959_MAGBIO Magnolia biondii HOM05D003847 ORTHO05D004976 1.1e-30 136.3 86 76.7
Psat1g001760 Pisum sativum HOM05D003847 ORTHO05D004976 1.1e-30 136.3 85 78.8
arahy.Tifrunner.gnm1.ann1.P1PLPP Arachis hypogaea HOM05D003847 ORTHO05D004976 1.5e-30 136.0 86 75.6
A09p00040 Brassica napus HOM05D003847 ORTHO05D004976 1.5e-30 136.0 86 75.6
BraA09t35735Z Brassica rapa HOM05D003847 ORTHO05D004976 1.5e-30 136.0 86 75.6
Cfa003885 Carpinus fangiana HOM05D003847 ORTHO05D004976 1.5e-30 136.0 86 79.1
TWI59G0695 Tripterygium wilfordii HOM05D003847 ORTHO05D004976 1.5e-30 136.0 86 76.7
ATR0661G289 Amborella trichopoda HOM05D003847 ORTHO05D004976 1.9e-30 135.6 86 74.4
A03p31980 Brassica napus HOM05D003847 ORTHO05D004976 1.9e-30 135.6 86 75.6
BraA03t12370Z Brassica rapa HOM05D003847 ORTHO05D004976 1.9e-30 135.6 86 75.6
AUR62022605 Chenopodium quinoa HOM05D003847 ORTHO05D004976 2.5e-30 135.2 86 76.7
TPR.G22298 Trifolium pratense HOM05D003847 ORTHO05D004976 2.5e-30 135.2 84 81.0
SalBow5G2471 Salvia bowleyana HOM05D003847 ORTHO05D004976 3.3e-30 134.8 86 77.9
FvH4_7g15081 Fragaria vesca HOM05D003847 ORTHO05D004976 4.3e-30 134.4 86 76.7
FAN01G0997 Fragaria x ananassa HOM05D003847 ORTHO05D004976 4.3e-30 134.4 86 76.7
FAN06G3510 Fragaria x ananassa HOM05D003847 ORTHO05D004976 4.3e-30 134.4 86 76.7
RcHm_v2.0_Chr1g0357201 Rosa chinensis HOM05D003847 ORTHO05D004976 4.3e-30 134.4 86 76.7
arahy.Tifrunner.gnm1.ann1.W45FS6 Arachis hypogaea HOM05D003847 ORTHO05D004976 7.3e-30 133.7 86 73.3
HPP92_022235 Vanilla planifolia HOM05D003847 ORTHO05D004976 7.3e-30 133.7 80 81.2
CDE11G0931 Ceratophyllum demersum HOM05D003847 ORTHO05D004976 9.5e-30 133.3 86 74.4
FAN03G1748 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.1e-29 132.1 86 75.6
HanXRQChr16g0521861 Helianthus annuus HOM05D003847 ORTHO05D004976 2.8e-29 131.7 87 74.7
Sc26g0000820 Simmondsia chinensis HOM05D003847 ORTHO05D004976 2.8e-29 131.7 87 73.6
TAR375G0471 Trochodendron aralioides HOM05D003847 ORTHO05D004976 3.6e-29 131.3 86 70.9
HanXRQChr16g0521851 Helianthus annuus HOM05D003847 ORTHO05D004976 4.7e-29 131.0 87 72.4
Sabra02G0147800 Salix brachista HOM05D003847 ORTHO05D004976 6.2e-29 130.6 111 64.0
Sabra02G0148200 Salix brachista HOM05D003847 ORTHO05D004976 6.2e-29 130.6 111 64.0
Psat2g071920 Pisum sativum HOM05D003847 ORTHO05D004976 3.1e-28 128.3 84 73.8
CDE09G0314 Ceratophyllum demersum HOM05D003847 ORTHO05D004976 6.8e-28 127.1 86 70.9
EL10Ac1g00369 Beta vulgaris HOM05D003847 ORTHO05D004976 8.9e-28 126.7 98 67.3
FAN10G0014 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.3e-26 122.9 86 67.4
RcHm_v2.0_Chr1g0357211 Rosa chinensis HOM05D003847 ORTHO05D004976 2.9e-26 121.7 86 67.4
FAN03G0710 Fragaria x ananassa HOM05D003847 ORTHO05D004976 3.7e-26 121.3 86 68.6
FvH4_7g15083 Fragaria vesca HOM05D003847 ORTHO05D004976 4.9e-26 120.9 86 67.4
FAN06G4922 Fragaria x ananassa HOM05D003847 ORTHO05D004976 4.9e-26 120.9 86 67.4
Hma1.2p1_0456F.1_g156440 Hydrangea macrophylla HOM05D003847 ORTHO05D004976 4.9e-26 120.9 70 84.3
Mapoly0151s0045 Marchantia polymorpha HOM05D003847 ORTHO05D004976 8.3e-26 120.2 85 64.7
Pp3c4_3300 Physcomitrium patens HOM05D003847 ORTHO05D004976 8.3e-26 120.2 86 67.4
Pp3c12_25070 Physcomitrium patens HOM05D003847 ORTHO05D004976 1.1e-25 119.8 85 67.1
SEGI_36957 Sequoiadendron giganteum HOM05D003847 ORTHO05D004976 3.2e-25 118.2 86 66.3
SMO364G0773 Selaginella moellendorffii HOM05D003847 ORTHO05D004976 5.4e-25 117.5 85 64.7
vmacro04325 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 5.4e-25 117.5 86 66.3
PSO478G2530 Papaver somniferum HOM05D003847 ORTHO05D004976 1.2e-24 116.3 86 66.3
PSO782G0912 Papaver somniferum HOM05D003847 ORTHO05D004976 1.2e-24 116.3 86 66.3
RcHm_v2.0_Chr3g0493601 Rosa chinensis HOM05D003847 ORTHO05D004976 4.6e-24 114.4 74 74.3
Lj9C587T13 Lonicera japonica HOM05D003847 ORTHO05D004976 1.0e-23 113.2 87 69.0
AagrBONN_evm.TU.Sc2ySwM_344.5530 Anthoceros agrestis HOM05D003847 ORTHO05D004976 3.0e-23 111.7 86 60.5
RcHm_v2.0_Chr1g0357271 Rosa chinensis HOM05D003847 ORTHO05D004976 3.9e-23 111.3 86 65.1
FAN06G0785 Fragaria x ananassa HOM05D003847 ORTHO05D004976 5.1e-23 110.9 86 65.1
FAN06G4494 Fragaria x ananassa HOM05D003847 ORTHO05D004976 5.1e-23 110.9 86 65.1
FAN10G3432 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.1e-22 109.8 86 62.8
SalBow5G1235 Salvia bowleyana HOM05D003847 ORTHO05D004976 1.1e-22 109.8 113 57.5
FvH4_7g15084 Fragaria vesca HOM05D003847 ORTHO05D004976 5.6e-22 107.5 86 62.8
CBR_g23782 Chara braunii HOM05D003847 ORTHO05D004976 6.8e-20 100.5 85 55.3
vmacro05290 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 7.6e-19 97.1 74 66.2
vmacro05292 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 6.4e-18 94.0 109 49.5
FAN01G2116 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.9e-17 92.4 69 65.2
FAN10G2623 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.9e-17 92.4 76 61.8
unitig_22.g6721 Utricularia gibba HOM05D001167 ORTHO05D001054 2.7e-16 88.6 51 78.4
Medtr8g028680 Medicago truncatula HOM05D003847 ORTHO05D004976 6.6e-15 84.0 92 52.2
TAR629G0433 Trochodendron aralioides HOM05D003847 ORTHO05D004976 5.6e-14 80.9 86 53.5
Hund27252 Selenicereus undatus HOM05D003847 ORTHO05D004976 2.8e-13 78.6 82 54.9
QL12p031965 Quercus lobata HOM05D003847 ORTHO05D004976 1.8e-12 75.9 82 48.8
Cre07.g356150 Chlamydomonas reinhardtii HOM05D003847 ORTHO05D004976 1.2e-11 73.2 84 41.7
Haze_26886 Corylus avellana HOM05D003847 ORTHO05D004976 3.4e-11 71.6 80 43.8
PRCOL_00003828 Prasinoderma coloniale HOM05D003847 ORTHO05D004976 3.4e-11 71.6 82 42.7
arahy.Tifrunner.gnm1.ann1.U13Q33 Arachis hypogaea HOM05D003847 ORTHO05D004976 7.6e-11 70.5 51 60.8
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 9.9e-11 70.1 53 62.3
FAN10G3576 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.1e-09 66.6 86 44.2


User provided reference genes

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