Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G0210 Cannabis sativa HOM05D004142 ORTHO05D005411 0.0e+00 1129.4 588 100.0
Prupe.8G180000 Prunus persica HOM05D004142 ORTHO05D005411 1.6e-234 816.2 590 72.2
Dinv14174 Davidia involucrata HOM05D004142 ORTHO05D005411 6.1e-226 787.7 590 70.3
MD10G1141700 Malus domestica HOM05D004142 ORTHO05D005411 6.1e-226 787.7 590 69.5
QL11p056391 Quercus lobata HOM05D004142 ORTHO05D005411 5.1e-225 784.6 598 70.1
FAN24G0393 Fragaria x ananassa HOM05D004142 ORTHO05D005411 3.3e-224 781.9 601 68.6
Cfa005371 Carpinus fangiana HOM05D004142 ORTHO05D005411 1.7e-223 779.6 591 69.0
Thecc.02G146100 Theobroma cacao HOM05D004142 ORTHO05D005411 1.5e-221 773.1 594 68.5
RcHm_v2.0_Chr6g0280901 Rosa chinensis HOM05D004142 ORTHO05D005411 5.0e-220 768.1 590 69.5
Duzib052G0377 Durio zibethinus HOM05D004142 ORTHO05D005411 2.1e-218 762.7 598 68.1
Actinidia20577 Actinidia chinensis HOM05D004142 ORTHO05D005411 2.3e-217 759.2 597 67.8
TAR633G0693 Trochodendron aralioides HOM05D004142 ORTHO05D005411 3.3e-216 755.4 596 68.1
CSS0035317 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 9.7e-216 753.8 597 67.8
CiPaw.06G115400 Carya illinoinensis HOM05D004142 ORTHO05D005411 2.8e-215 752.3 588 68.0
Atru.chr3.3247 Acer truncatum HOM05D004142 ORTHO05D005411 8.2e-215 750.7 593 67.3
Gohir.A13G065000 Gossypium hirsutum HOM05D004142 ORTHO05D005411 8.2e-215 750.7 596 67.4
Gorai.013G064000 Gossypium raimondii HOM05D004142 ORTHO05D005411 3.1e-214 748.8 596 67.6
Gohir.D13G057300 Gossypium hirsutum HOM05D004142 ORTHO05D005411 1.2e-213 746.9 596 67.6
Potri.009G168100 Populus trichocarpa HOM05D004142 ORTHO05D005411 7.7e-213 744.2 594 65.8
FAN15G2670 Fragaria x ananassa HOM05D004142 ORTHO05D005411 1.7e-212 743.0 611 65.1
Ciclev10028022m.g Citrus clementina HOM05D004142 ORTHO05D005411 3.8e-212 741.9 592 66.9
Lj5C171T17 Lonicera japonica HOM05D004142 ORTHO05D005411 6.5e-212 741.1 662 61.0
CSS0014725 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.1e-211 740.3 604 65.9
Eucgr.G01885 Eucalyptus grandis HOM05D004142 ORTHO05D005411 1.2e-210 736.9 579 66.5
Actinidia17993 Actinidia chinensis HOM05D004142 ORTHO05D005411 2.7e-210 735.7 598 66.2
Haze_02000 Corylus avellana HOM05D004142 ORTHO05D005411 3.6e-210 735.3 621 64.9
Rhsim11G0198100 Rhododendron simsii HOM05D004142 ORTHO05D005411 2.3e-209 732.6 583 66.9
TWI75G0433 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 3.0e-209 732.3 593 66.3
Manes.04G066800 Manihot esculenta HOM05D004142 ORTHO05D005411 3.7e-207 725.3 578 66.4
Phvul.008G235900 Phaseolus vulgaris HOM05D004142 ORTHO05D005411 1.8e-206 723.0 585 65.1
Solyc10g074560.2 Solanum lycopersicum HOM05D004142 ORTHO05D005411 4.1e-206 721.8 605 64.3
Sopen10g027050 Solanum pennellii HOM05D004142 ORTHO05D005411 4.1e-206 721.8 596 64.4
VMungo0647G1269 Vigna mungo HOM05D004142 ORTHO05D005411 3.8e-204 715.3 582 64.6
Glyma.02G245400 Glycine max HOM05D004142 ORTHO05D005411 1.1e-203 713.8 579 65.1
PGR042G3440 Punica granatum HOM05D004142 ORTHO05D005411 1.1e-203 713.8 570 66.8
Aa31LG8G14620 Aethionema arabicum HOM05D004142 ORTHO05D005411 4.2e-203 711.8 599 64.4
Glyma.14G215500 Glycine max HOM05D004142 ORTHO05D005411 4.2e-203 711.8 581 64.5
Peaxi162Scf01986g00004 Petunia axillaris HOM05D004142 ORTHO05D005411 4.0e-201 705.3 593 64.8
TWI31G1182 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 4.4e-200 701.8 601 63.6
Lalb_Chr04g0251341 Lupinus albus HOM05D004142 ORTHO05D005411 3.7e-199 698.7 594 62.8
Sabra09G0130600 Salix brachista HOM05D004142 ORTHO05D005852 4.8e-199 698.4 593 62.6
Thhalv10022610m.g Eutrema salsugineum HOM05D004142 ORTHO05D005411 1.4e-198 696.8 597 63.1
BcaB07g31738 Brassica carinata HOM05D004142 ORTHO05D005411 3.1e-198 695.7 601 63.2
Sp3g30590 Schrenkiella parvula HOM05D004142 ORTHO05D005411 4.1e-198 695.3 597 63.5
EL10Ac9g21530 Beta vulgaris HOM05D004142 ORTHO05D005411 7.0e-198 694.5 594 63.5
COL.COLO4_34310 Corchorus olitorius HOM05D004142 ORTHO05D005411 7.0e-198 694.5 593 64.1
CARHR293590 Cardamine hirsuta HOM05D004142 ORTHO05D005411 9.1e-198 694.1 590 62.4
CSS0002990 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.6e-197 693.3 633 61.5
CsaV3_7G001920 Cucumis sativus L. HOM05D004142 ORTHO05D005411 4.5e-197 691.8 583 63.6
SGA_v2.0_scaffold98G29302 Striga asiatica HOM05D004142 ORTHO05D005411 4.5e-197 691.8 601 62.7
AL3G50110 Arabidopsis lyrata HOM05D004142 ORTHO05D005411 5.0e-196 688.3 583 61.7
MELO3C013248.2 Cucumis melo HOM05D004142 ORTHO05D005411 6.6e-196 688.0 579 63.9
Psat2g043640 Pisum sativum HOM05D004142 ORTHO05D005411 1.5e-195 686.8 592 61.7
Ah.05g178840 Amaranthus hybridus HOM05D004142 ORTHO05D005411 2.5e-195 686.0 579 63.7
Sed0023655 Sechium edule HOM05D004142 ORTHO05D005411 4.2e-195 685.3 594 63.0
CAN.G765.24 Capsicum annuum HOM05D004142 ORTHO05D005411 1.6e-194 683.3 596 61.4
BcaB03g16472 Brassica carinata HOM05D004142 ORTHO05D005411 6.8e-193 677.9 592 62.2
AT2G17250 Arabidopsis thaliana HOM05D004142 ORTHO05D005411 2.0e-192 676.4 580 62.1
Medtr5g078780 Medicago truncatula HOM05D004142 ORTHO05D005411 2.6e-192 676.0 587 61.0
BcaC04g22983 Brassica carinata HOM05D004142 ORTHO05D005411 3.4e-192 675.6 602 61.5
Nn5g31006 Nelumbo nucifera HOM05D004142 ORTHO05D005411 4.4e-192 675.2 597 63.1
C09p13280 Brassica napus HOM05D004142 ORTHO05D005411 9.8e-192 674.1 610 61.0
BolC9t54221H Brassica oleracea HOM05D004142 ORTHO05D005411 9.8e-192 674.1 610 61.0
DCAR_005486 Daucus carota HOM05D004142 ORTHO05D005411 9.8e-192 674.1 598 61.5
MSTRG.27614 Avicennia marina HOM05D004142 ORTHO05D005411 1.7e-191 673.3 588 62.9
BraA07t28174Z Brassica rapa HOM05D004142 ORTHO05D005411 4.9e-191 671.8 600 61.0
Hund06363 Selenicereus undatus HOM05D004142 ORTHO05D005411 1.1e-190 670.6 579 62.9
A07p03800 Brassica napus HOM05D004142 ORTHO05D005411 1.4e-190 670.2 595 61.3
TPR.G8874 Trifolium pratense HOM05D004142 ORTHO05D005411 1.8e-190 669.8 583 61.1
SalBow5G4664 Salvia bowleyana HOM05D004142 ORTHO05D005411 1.2e-189 667.2 598 61.4
SalBow5G1400 Salvia bowleyana HOM05D004142 ORTHO05D005411 4.5e-189 665.2 598 61.4
Aqoxy6G01597 Aquilegia oxysepala HOM05D004142 ORTHO05D005411 1.0e-188 664.1 602 61.0
A09p11250 Brassica napus HOM05D004142 ORTHO05D005411 8.6e-188 661.0 596 61.2
THA.LOC104819692 Tarenaya hassleriana HOM05D004142 ORTHO05D005411 2.5e-187 659.4 614 59.9
LjContig00141g0017492 Lotus japonicus HOM05D004142 ORTHO05D005411 5.6e-187 658.3 562 61.7
BraA09t36766Z Brassica rapa HOM05D004142 ORTHO05D005411 1.6e-186 656.8 597 60.6
Carub.0003s3119 Capsella rubella HOM05D004142 ORTHO05D005411 2.1e-186 656.4 584 61.6
Ca_01556_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 3.6e-186 655.6 618 57.9
arahy.Tifrunner.gnm1.ann1.FRA838 Arachis hypogaea HOM05D004142 ORTHO05D005411 8.9e-185 651.0 597 60.0
Sc08g0002210 Simmondsia chinensis HOM05D004142 ORTHO05D005411 2.6e-184 649.4 588 60.0
ECA233G5375 Erigeron canadensis HOM05D004142 ORTHO05D005411 9.8e-184 647.5 582 61.5
HanXRQChr16g0515111 Helianthus annuus HOM05D004142 ORTHO05D005411 9.8e-184 647.5 578 60.7
HanXRQChr09g0239911 Helianthus annuus HOM05D004142 ORTHO05D005411 2.9e-183 646.0 569 61.5
Nitab4.5_0005657g0020 Nicotiana tabacum HOM05D004142 ORTHO05D005411 2.4e-182 642.9 599 59.9
Cc09_g10830 Coffea canephora HOM05D004142 ORTHO05D005411 5.4e-182 641.7 584 60.6
Migut.B01359 Erythranthe guttata HOM05D004142 ORTHO05D005411 1.0e-180 637.5 594 58.4
arahy.Tifrunner.gnm1.ann1.52DH7S Arachis hypogaea HOM05D004142 ORTHO05D005411 1.7e-180 636.7 599 58.6
ClCG02G003400 Citrullus lanatus HOM05D004142 ORTHO05D005411 7.3e-179 631.3 588 58.7
FvH4_2g16780 Fragaria vesca HOM05D004142 ORTHO05D005411 7.3e-179 631.3 500 67.6
vmacro02340 Vaccinium macrocarpon HOM05D004142 ORTHO05D005411 7.3e-179 631.3 605 59.7
arahy.Tifrunner.gnm1.ann1.0H97XI Arachis hypogaea HOM05D004142 ORTHO05D005411 1.1e-177 627.5 590 58.8
CDE05G3311 Ceratophyllum demersum HOM05D004142 ORTHO05D005411 3.1e-177 625.9 592 57.9
Lsat_1_v5_gn_5_183861 Lactuca sativa HOM05D004142 ORTHO05D005411 3.7e-175 619.0 577 59.1
PSO541G0415 Papaver somniferum HOM05D004142 ORTHO05D005411 2.1e-170 603.2 587 55.9
Atru.chr5.3556 Acer truncatum HOM05D004142 ORTHO05D005411 2.3e-169 599.7 582 58.8
PSO675G0945 Papaver somniferum HOM05D004142 ORTHO05D005411 8.3e-167 591.3 587 55.2
BcaC06g36246 Brassica carinata HOM05D004142 ORTHO05D005411 1.1e-166 590.9 585 57.3
CSS0034003 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.1e-166 590.9 598 57.7
Zm00001eb428130 Zea mays HOM05D004142 ORTHO05D005411 1.1e-166 590.9 585 55.4
Os04g0585300 Oryza sativa ssp. japonica HOM05D004142 ORTHO05D005411 7.1e-166 588.2 582 55.7
BolC7t41018H Brassica oleracea HOM05D004142 ORTHO05D005411 1.6e-165 587.0 559 59.2
AUR62013175 Chenopodium quinoa HOM05D004142 ORTHO05D005411 1.3e-164 583.9 592 55.6
Nitab4.5_0001700g0140 Nicotiana tabacum HOM05D004142 ORTHO05D005411 1.7e-164 583.6 585 57.4
ATR0807G091 Amborella trichopoda HOM05D004142 ORTHO05D005411 2.8e-162 576.2 603 54.1
MD05G1138800 Malus domestica HOM05D004142 ORTHO05D005411 3.4e-160 569.3 582 57.0
C07p06050 Brassica napus HOM05D004142 ORTHO05D005411 6.4e-159 565.1 583 55.4
CAN.G397.37 Capsicum annuum HOM05D004142 ORTHO05D005411 2.0e-152 543.5 486 60.5
TAR381G0855 Trochodendron aralioides HOM05D004142 ORTHO05D005411 4.6e-141 505.8 470 61.3
AUR62010174 Chenopodium quinoa HOM05D004142 ORTHO05D005411 5.6e-139 498.8 468 59.4
Mapoly0043s0054 Marchantia polymorpha HOM05D004142 ORTHO05D005411 1.0e-135 488.0 586 49.1
AagrBONN_evm.TU.Sc2ySwM_228.5327 Anthoceros agrestis HOM05D004142 ORTHO05D005411 7.6e-128 461.8 617 46.4
Pp3c9_12610 Physcomitrium patens HOM05D004142 ORTHO05D005411 9.3e-126 454.9 592 47.0
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 3.7e-122 443.0 577 47.7
BcaB07g31740 Brassica carinata HOM05D004142 ORTHO05D005411 3.2e-102 376.7 495 49.1
Oeu037462.1 Olea europaea HOM05D004142 ORTHO05D005411 2.7e-101 373.6 377 55.7
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 1.2e-91 341.7 534 42.3
Cpa.g.sc60.17 Carica papaya HOM05D004142 ORTHO05D005411 1.3e-90 338.2 366 53.8
SHI03795 Sapria himalayana HOM05D004142 ORTHO05D005411 2.4e-89 334.0 277 64.6
MD11G1014400 Malus domestica HOM05D004142 ORTHO05D005411 5.0e-79 299.7 354 51.4
HPP92_025664 Vanilla planifolia HOM05D004142 ORTHO05D005411 2.4e-73 280.8 307 56.0
CBR_g44269 Chara braunii HOM05D004142 ORTHO05D005411 5.4e-73 279.6 380 44.2
ECA246G3488 Erigeron canadensis HOM05D004142 ORTHO05D005411 1.6e-72 278.1 362 46.7
Eucgr.H04975 Eucalyptus grandis HOM05D004142 ORTHO05D005411 2.0e-64 251.1 241 57.3
GSVIVG01004114001 Vitis vinifera HOM05D004142 ORTHO05D005411 3.0e-63 247.3 208 63.9
Cpa.g.sc60.19 Carica papaya HOM05D004142 ORTHO05D005411 3.3e-62 243.8 222 59.5
PRCOL_00005396 Prasinoderma coloniale HOM05D004142 ORTHO05D005411 6.8e-60 236.1 427 36.5
Ca_05793_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 9.8e-59 232.3 207 59.9
Cre01.g068377 Chlamydomonas reinhardtii HOM05D004142 ORTHO05D005411 1.1e-57 228.8 399 36.8
Oeu037461.1 Olea europaea HOM05D004142 ORTHO05D005411 5.2e-52 209.9 125 81.6
SHI03796 Sapria himalayana HOM05D004142 ORTHO05D005411 7.8e-48 196.1 195 50.3
GSVIVG01004442001 Vitis vinifera HOM05D004142 ORTHO05D005411 8.1e-45 186.0 153 64.7
TAR318G0001 Trochodendron aralioides HOM05D004142 ORTHO05D005411 1.4e-44 185.3 154 61.7
Hma1.2p1_0796F.1_g219330 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 1.8e-44 184.9 117 75.2
MCO08G220 Micromonas commoda HOM05D004142 ORTHO05D005411 2.4e-44 184.5 227 42.7
SEGI_26341 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 3.9e-39 167.2 145 64.1
HPP92_025663 Vanilla planifolia HOM05D004142 ORTHO05D005411 7.3e-38 162.9 284 37.3
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 2.1e-37 161.4 550 27.8
AagrBONN_evm.TU.Sc2ySwM_228.5299 Anthoceros agrestis HOM05D004142 ORTHO05D005411 8.1e-37 159.5 159 57.9
Zm00001eb152690 Zea mays HOM05D004142 ORTHO05D000502 2.4e-36 157.9 98 81.6
Lsat_1_v5_gn_5_64620 Lactuca sativa HOM05D004142 ORTHO05D005411 5.8e-35 153.3 130 65.4
CSS0025136 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.3e-34 152.1 185 49.7
SEGI_12604 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 1.1e-33 149.1 139 56.1
FAN27G1246 Fragaria x ananassa HOM05D004142 ORTHO05D005411 5.4e-33 146.7 124 69.4
SEGI_03267 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 9.3e-33 146.0 131 58.0
AagrBONN_evm.TU.Sc2ySwM_228.5300 Anthoceros agrestis HOM05D004142 ORTHO05D005411 2.3e-31 141.4 286 32.2
BcaB07g31739 Brassica carinata HOM05D004142 ORTHO05D005411 8.1e-29 132.9 227 41.0
Hma1.2p1_0151F.1_g067370 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 2.6e-27 127.9 113 63.7
Zm00001eb177550 Zea mays HOM05D004142 ORTHO05D005411 2.2e-26 124.8 87 75.9
Zm00001eb282240 Zea mays HOM05D004142 ORTHO05D005411 4.9e-26 123.6 87 75.9
Psat3g160080 Pisum sativum HOM05D004142 ORTHO05D005411 1.5e-22 112.1 157 42.0
TPR.G40409 Trifolium pratense HOM05D004142 ORTHO05D005411 3.3e-22 110.9 65 78.5
BcaB07g31742 Brassica carinata HOM05D004142 ORTHO05D005411 9.6e-22 109.4 171 42.1
Zm00001eb112060 Zea mays HOM05D004142 ORTHO05D005983 2.1e-21 108.2 74 78.4
Oeu003432.1 Olea europaea HOM05D004142 ORTHO05D005411 6.2e-21 106.7 111 49.5
SEGI_29991 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 6.2e-21 106.7 178 38.2
MD11G1014300 Malus domestica HOM05D004142 ORTHO05D005411 1.5e-19 102.1 79 69.6
Eucgr.H04983 Eucalyptus grandis HOM05D004142 ORTHO05D005411 2.6e-19 101.3 69 73.9
BcaC04g22984 Brassica carinata HOM05D004142 ORTHO05D005411 1.6e-16 92.0 75 66.7
Medtr5g078810 Medicago truncatula HOM05D004142 ORTHO05D005411 2.7e-16 91.3 69 68.1
Lsat_1_v5_gn_5_140320 Lactuca sativa HOM05D004142 ORTHO05D036439 5.3e-12 77.0 146 39.0
Zm00001eb028530 Zea mays HOM05D004142 ORTHO05D000502 4.5e-11 73.9 49 77.6
RcHm_v2.0_Chr1g0336401 Rosa chinensis HOM05D004142 ORTHO05D005411 2.9e-10 71.2 49 67.3
SEGI_00997 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 9.3e-09 66.2 115 39.1
RcHm_v2.0_Chr7g0239681 Rosa chinensis HOM05D004142 ORTHO05D005411 1.6e-08 65.5 48 62.5
TPR.G18886 Trifolium pratense HOM05D000005 ORTHO05D000012 2.5e-06 58.2 48 58.3


User provided reference genes

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