Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G0207 Cannabis sativa HOM05D003899 ORTHO05D003655 2.9e-70 268.5 139 100.0
Cfa018365 Carpinus fangiana HOM05D003899 ORTHO05D003655 2.1e-28 129.4 126 57.9
Haze_17704 Corylus avellana HOM05D003899 ORTHO05D003655 2.8e-28 129.0 126 59.5
Gohir.A02G066500 Gossypium hirsutum HOM05D003899 ORTHO05D003655 5.4e-24 114.8 129 51.9
FvH4_2g14670 Fragaria vesca HOM05D003899 ORTHO05D003655 3.5e-23 112.1 88 64.8
FAN24G0119 Fragaria x ananassa HOM05D003899 ORTHO05D003655 3.5e-23 112.1 88 64.8
MD05G1014900 Malus domestica HOM05D003899 ORTHO05D003655 1.3e-22 110.2 99 57.6
Gorai.005G081600 Gossypium raimondii HOM05D003899 ORTHO05D003655 1.7e-22 109.8 127 52.0
Prupe.8G018800 Prunus persica HOM05D003899 ORTHO05D003655 3.0e-22 109.0 107 54.2
FAN20G0153 Fragaria x ananassa HOM05D003899 ORTHO05D003655 2.5e-21 105.9 102 56.9
FAN15G3500 Fragaria x ananassa HOM05D003899 ORTHO05D003655 4.3e-21 105.1 102 56.9
RcHm_v2.0_Chr6g0277141 Rosa chinensis HOM05D003899 ORTHO05D003655 2.8e-20 102.4 115 49.6
Manes.12G153900 Manihot esculenta HOM05D003899 ORTHO05D003655 3.6e-20 102.1 127 45.7
MSTRG.1375 Avicennia marina HOM05D003899 ORTHO05D003655 1.8e-19 99.8 125 48.0
CiPaw.16G017800 Carya illinoinensis HOM05D003899 ORTHO05D003655 1.8e-19 99.8 127 48.0
Dinv24330 Davidia involucrata HOM05D003899 ORTHO05D003655 1.8e-19 99.8 122 45.9
Thhalv10012331m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 1.8e-19 99.8 113 50.4
Oeu030532.1 Olea europaea HOM05D003899 ORTHO05D003655 1.8e-19 99.8 135 45.9
BolC6t35162H Brassica oleracea HOM05D003899 ORTHO05D003655 2.4e-19 99.4 92 57.6
A10p07750 Brassica napus HOM05D003899 ORTHO05D003655 3.1e-19 99.0 89 58.4
BraSC36t46027Z Brassica rapa HOM05D003899 ORTHO05D003655 3.1e-19 99.0 89 58.4
QL02p025320 Quercus lobata HOM05D003899 ORTHO05D003655 5.2e-19 98.2 117 50.4
TWI32G0122 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 5.2e-19 98.2 118 44.1
Thecc.01G128000 Theobroma cacao HOM05D003899 ORTHO05D003655 6.8e-19 97.8 125 44.0
Actinidia06640 Actinidia chinensis HOM05D003899 ORTHO05D003655 1.2e-18 97.1 121 47.9
BcaB07g33974 Brassica carinata HOM05D003899 ORTHO05D003655 3.4e-18 95.5 89 57.3
Gohir.A11G224804 Gossypium hirsutum HOM05D003899 ORTHO05D003655 3.4e-18 95.5 90 55.6
Thecc.08G144600 Theobroma cacao HOM05D003899 ORTHO05D003655 3.4e-18 95.5 129 46.5
THA.LOC104806849 Tarenaya hassleriana HOM05D003899 ORTHO05D003655 5.8e-18 94.7 126 46.0
Duzib041G0166 Durio zibethinus HOM05D003899 ORTHO05D003655 7.6e-18 94.4 126 45.2
PGR044G0858 Punica granatum HOM05D003899 ORTHO05D003655 9.9e-18 94.0 74 64.9
PGR044G1758 Punica granatum HOM05D003899 ORTHO05D003655 9.9e-18 94.0 73 65.8
Glyma.14G121800 Glycine max HOM05D003899 ORTHO05D003655 1.3e-17 93.6 107 48.6
Atru.chr4.839 Acer truncatum HOM05D003899 ORTHO05D003655 2.9e-17 92.4 126 41.3
CsaV3_6G030980 Cucumis sativus L. HOM05D003899 ORTHO05D003655 3.8e-17 92.0 81 58.0
Nn5g28623 Nelumbo nucifera HOM05D003899 ORTHO05D003655 3.8e-17 92.0 121 49.6
arahy.Tifrunner.gnm1.ann1.UE47UQ Arachis hypogaea HOM05D003899 ORTHO05D003655 6.4e-17 91.3 107 48.6
ClCG08G006450 Citrullus lanatus HOM05D000058 ORTHO05D000077 6.4e-17 91.3 112 48.2
COL.COLO4_08943 Corchorus olitorius HOM05D003899 ORTHO05D003655 1.1e-16 90.5 115 49.6
HanXRQChr04g0125201 Helianthus annuus HOM05D003899 ORTHO05D003655 1.1e-16 90.5 126 46.0
QL06p029227 Quercus lobata HOM05D003899 ORTHO05D003655 1.1e-16 90.5 119 47.1
CARHR035480 Cardamine hirsuta HOM05D003899 ORTHO05D003655 1.9e-16 89.7 94 50.0
MELO3C027328.2 Cucumis melo HOM05D003899 ORTHO05D003655 2.4e-16 89.4 113 46.9
Ciclev10003780m.g Citrus clementina HOM05D003899 ORTHO05D003655 3.2e-16 89.0 132 43.9
AT1G43790 Arabidopsis thaliana HOM05D003899 ORTHO05D003655 4.2e-16 88.6 108 47.2
Potri.005G060700 Populus trichocarpa HOM05D003899 ORTHO05D003655 5.4e-16 88.2 132 43.9
AL1G51910 Arabidopsis lyrata HOM05D003899 ORTHO05D003655 7.1e-16 87.8 102 47.1
AUR62017911 Chenopodium quinoa HOM05D003899 ORTHO05D003655 9.3e-16 87.4 126 43.7
C06p00330 Brassica napus HOM05D003899 ORTHO05D003655 1.2e-15 87.0 92 54.3
Duzib264G1053 Durio zibethinus HOM05D003899 ORTHO05D003655 2.1e-15 86.3 108 45.4
Rhsim10G0136200 Rhododendron simsii HOM05D003899 ORTHO05D003655 2.1e-15 86.3 118 43.2
RhsimUnG0132700 Rhododendron simsii HOM05D003899 ORTHO05D003655 2.1e-15 86.3 118 43.2
EL10Ac6g15278 Beta vulgaris HOM05D003899 ORTHO05D003655 2.7e-15 85.9 120 41.7
Sed0026893 Sechium edule HOM05D003899 ORTHO05D003655 3.5e-15 85.5 115 47.0
Sp1g32910 Schrenkiella parvula HOM05D003899 ORTHO05D003655 6.0e-15 84.7 77 58.4
PSO017G4320 Papaver somniferum HOM05D003899 ORTHO05D003655 1.3e-14 83.6 121 42.1
CAN.G375.87 Capsicum annuum HOM05D003899 ORTHO05D003655 1.7e-14 83.2 91 45.1
Potri.007G108100 Populus trichocarpa HOM05D003899 ORTHO05D003655 1.7e-14 83.2 129 41.1
Gorai.003G068900 Gossypium raimondii HOM05D003899 ORTHO05D003655 2.3e-14 82.8 81 51.9
Medtr1g029140 Medicago truncatula HOM05D003899 ORTHO05D003655 2.3e-14 82.8 125 42.4
Gohir.D11G228940 Gossypium hirsutum HOM05D003899 ORTHO05D003655 3.0e-14 82.4 117 44.4
EL10Ac7g17632 Beta vulgaris HOM05D003899 ORTHO05D003655 3.9e-14 82.0 120 41.7
Ca_12820_v3 Cicer arietinum L. HOM05D003899 ORTHO05D003655 5.1e-14 81.6 141 41.1
Aqoxy5G02188 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 6.6e-14 81.3 150 35.3
Gohir.D02G072400 Gossypium hirsutum HOM05D003899 ORTHO05D003655 8.7e-14 80.9 128 43.8
Lalb_Chr25g0281721 Lupinus albus HOM05D003899 ORTHO05D003655 1.1e-13 80.5 122 42.6
DCAR_007049 Daucus carota HOM05D003899 ORTHO05D003655 1.9e-13 79.7 116 43.1
BcaC08g42822 Brassica carinata HOM05D003899 ORTHO05D003655 2.5e-13 79.3 77 57.1
Psat6g039960 Pisum sativum HOM05D003899 ORTHO05D003655 2.5e-13 79.3 110 40.9
SGA_v2.0_scaffold73G24343 Striga asiatica HOM05D003899 ORTHO05D003655 2.5e-13 79.3 112 42.9
Dinv41123 Davidia involucrata HOM05D000043 ORTHO05D002577 3.3e-13 79.0 83 55.4
Lj1g0026176 Lotus japonicus HOM05D003899 ORTHO05D003655 4.3e-13 78.6 125 44.0
Migut.N03236 Erythranthe guttata HOM05D003899 ORTHO05D003655 7.3e-13 77.8 135 43.0
Thhalv10012251m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 9.6e-13 77.4 83 50.6
Lsat_1_v5_gn_5_108780 Lactuca sativa HOM05D003899 ORTHO05D003655 1.6e-12 76.6 88 46.6
Aqoxy3G00817 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 2.1e-12 76.3 131 39.7
AUR62043709 Chenopodium quinoa HOM05D003899 ORTHO05D003655 2.1e-12 76.3 113 41.6
AUR62003600 Chenopodium quinoa HOM05D003899 ORTHO05D003655 2.8e-12 75.9 126 38.9
Carub.0001s3477 Capsella rubella HOM05D003899 ORTHO05D003655 3.6e-12 75.5 106 43.4
Manes.18G087500 Manihot esculenta HOM05D003899 ORTHO05D003655 1.1e-11 73.9 86 51.2
HanXRQChr05g0161081 Helianthus annuus HOM05D003899 ORTHO05D003655 2.4e-11 72.8 88 45.5
PSO170G2020 Papaver somniferum HOM05D003899 ORTHO05D003655 2.4e-11 72.8 124 39.5
Dinv25809 Davidia involucrata HOM05D003899 ORTHO05D003655 3.1e-11 72.4 74 56.8
AUR62026786 Chenopodium quinoa HOM05D003899 ORTHO05D003655 4.0e-11 72.0 138 37.0
Medtr1g008675 Medicago truncatula HOM05D003899 ORTHO05D003655 6.9e-11 71.2 101 40.6
AT5G48920 Arabidopsis thaliana HOM05D003899 ORTHO05D003655 1.2e-10 70.5 78 51.3
Lsat_1_v5_gn_9_107661 Lactuca sativa HOM05D003899 ORTHO05D003655 1.2e-10 70.5 92 43.5
Phvul.001G052300 Phaseolus vulgaris HOM05D003899 ORTHO05D003655 1.2e-10 70.5 77 48.1
Psat6g033720 Pisum sativum HOM05D003899 ORTHO05D003655 2.0e-10 69.7 93 46.2
MELO3C023688.2 Cucumis melo HOM05D003899 ORTHO05D003655 2.6e-10 69.3 103 42.7
ECA246G5022 Erigeron canadensis HOM05D003899 ORTHO05D003655 2.6e-10 69.3 95 37.9
AUR62013490 Chenopodium quinoa HOM05D003899 ORTHO05D003655 3.4e-10 68.9 136 35.3
Duzib093G0910 Durio zibethinus HOM05D003899 ORTHO05D003655 4.4e-10 68.6 87 42.5
QL02p025328 Quercus lobata HOM05D003899 ORTHO05D003655 4.4e-10 68.6 91 46.2
Medtr1g008620 Medicago truncatula HOM05D003899 ORTHO05D003655 5.8e-10 68.2 93 46.2
Psat6g033800 Pisum sativum HOM05D003899 ORTHO05D003655 5.8e-10 68.2 97 44.3
Solyc07g045590.1 Solanum lycopersicum HOM05D003899 ORTHO05D003655 5.8e-10 68.2 131 35.1
Cpa.g.sc49.66 Carica papaya HOM05D003899 ORTHO05D003655 9.9e-10 67.4 88 51.1
COL.COLO4_14024 Corchorus olitorius HOM05D003899 ORTHO05D003655 9.9e-10 67.4 99 38.4
HanXRQChr08g0232541 Helianthus annuus HOM05D003899 ORTHO05D003655 1.3e-09 67.0 89 42.7
TAR381G0487 Trochodendron aralioides HOM05D003899 ORTHO05D003655 1.3e-09 67.0 85 48.2
CAN.G1012.7 Capsicum annuum HOM05D003899 ORTHO05D003655 1.7e-09 66.6 88 42.0
Sed0020885 Sechium edule HOM05D003899 ORTHO05D003655 2.2e-09 66.2 142 38.0
TPR.G12083 Trifolium pratense HOM05D003899 ORTHO05D003655 2.2e-09 66.2 80 45.0
BcaB03g16849 Brassica carinata HOM05D003899 ORTHO05D003655 2.9e-09 65.9 110 41.8
MBI06_g43012_MAGBIO Magnolia biondii HOM05D003899 ORTHO05D003655 2.9e-09 65.9 114 38.6
CARHR046070 Cardamine hirsuta HOM05D003899 ORTHO05D003655 3.8e-09 65.5 64 56.2
Lsat_1_v5_gn_5_108760 Lactuca sativa HOM05D003899 ORTHO05D003655 3.8e-09 65.5 87 42.5
Peaxi162Scf00263g00033 Petunia axillaris HOM05D003899 ORTHO05D003655 8.4e-09 64.3 115 45.2
Phvul.001G073300 Phaseolus vulgaris HOM05D003899 ORTHO05D003655 8.4e-09 64.3 56 57.1
MD10G1014900 Malus domestica HOM05D003899 ORTHO05D003655 1.1e-08 63.9 108 39.8
PGSC0003DMG400027629 Solanum tuberosum HOM05D003899 ORTHO05D003655 1.4e-08 63.5 106 35.8
Glyma.14G122000 Glycine max HOM05D003899 ORTHO05D003655 1.9e-08 63.2 69 52.2
ECA238G1798 Erigeron canadensis HOM05D003899 ORTHO05D003655 3.2e-08 62.4 101 46.5
Sabra07G0088500 Salix brachista HOM05D000850 ORTHO05D000266 3.2e-08 62.4 86 46.5
AL1G64600 Arabidopsis lyrata HOM05D003899 ORTHO05D003655 4.2e-08 62.0 64 53.1
PGR002G0009 Punica granatum HOM05D003899 ORTHO05D003655 4.2e-08 62.0 46 65.2
PGSC0003DMG400024811 Solanum tuberosum HOM05D003899 ORTHO05D003655 4.2e-08 62.0 108 38.0
Nitab4.5_0015327g0010 Nicotiana tabacum HOM05D003899 ORTHO05D003655 5.4e-08 61.6 96 45.8
Nn1g06205 Nelumbo nucifera HOM05D003899 ORTHO05D003655 7.1e-08 61.2 85 44.7
TWI60G1060 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 7.1e-08 61.2 83 44.6
CsaV3_7G024950 Cucumis sativus L. HOM05D000219 ORTHO05D000226 9.3e-08 60.8 108 39.8
Nitab4.5_0002974g0030 Nicotiana tabacum HOM05D003899 ORTHO05D003655 9.3e-08 60.8 117 41.0
CiPaw.15G021500 Carya illinoinensis HOM05D003899 ORTHO05D003655 1.6e-07 60.1 76 46.1
Nn5g28622 Nelumbo nucifera HOM05D003899 ORTHO05D003655 1.6e-07 60.1 83 42.2
PGSC0003DMG400024810 Solanum tuberosum HOM05D003899 ORTHO05D003655 1.6e-07 60.1 109 37.6
ClCG09G009790 Citrullus lanatus HOM05D003899 ORTHO05D003655 2.1e-07 59.7 121 37.2
PGR002G0007 Punica granatum HOM05D003899 ORTHO05D003655 2.1e-07 59.7 37 73.0
Lj2C604T4 Lonicera japonica HOM05D003899 ORTHO05D003655 2.7e-07 59.3 83 41.0
PSO126G0001 Papaver somniferum HOM05D003899 ORTHO05D003655 2.7e-07 59.3 73 46.6
Sp1g41920 Schrenkiella parvula HOM05D003899 ORTHO05D003655 2.7e-07 59.3 103 39.8
Lj2C604T3 Lonicera japonica HOM05D003899 ORTHO05D003655 3.5e-07 58.9 86 40.7
CSS0000461 Camellia sinensis var. sinensis HOM05D003899 ORTHO05D003655 4.6e-07 58.5 73 50.7
TPR.G33315 Trifolium pratense HOM05D003899 ORTHO05D003655 6.0e-07 58.2 77 44.2
ECA246G3613 Erigeron canadensis HOM05D003899 ORTHO05D003655 7.9e-07 57.8 94 36.2
Sc02g0004420 Simmondsia chinensis HOM05D003899 ORTHO05D003655 7.9e-07 57.8 91 41.8
Dinv03732 Davidia involucrata HOM05D000043 ORTHO05D002577 1.0e-06 57.4 88 38.6
Carub.0001s4477 Capsella rubella HOM05D003899 ORTHO05D003655 5.1e-06 55.1 110 38.2
VMungo0647G2071 Vigna mungo HOM05D003899 ORTHO05D003655 5.1e-06 55.1 59 49.2
CANSAT11G1227 Cannabis sativa HOM05D003899 ORTHO05D003655 6.6e-06 54.7 75 42.7
Nn1g06203 Nelumbo nucifera HOM05D003899 ORTHO05D003655 6.6e-06 54.7 97 40.2
Hma1.2p1_0528F.1_g173010 Hydrangea macrophylla HOM05D003899 ORTHO05D003655 8.7e-06 54.3 75 42.7
TWI79G1413 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 8.7e-06 54.3 79 43.0


User provided reference genes

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