Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G0191 Cannabis sativa HOM05D007649 ORTHO05D009668 5.1e-45 184.1 98 100.0
QL12p031020 Quercus lobata HOM05D007649 ORTHO05D009668 3.0e-29 131.7 95 74.7
CiPaw.08G016800 Carya illinoinensis HOM05D007649 ORTHO05D009668 1.3e-27 126.3 98 71.4
Haze_21646 Corylus avellana HOM05D007649 ORTHO05D009668 1.8e-26 122.5 98 71.4
Dinv30235 Davidia involucrata HOM05D007649 ORTHO05D009668 9.1e-26 120.2 95 69.5
PGR044G0128 Punica granatum HOM05D007649 ORTHO05D009668 1.7e-24 115.9 95 68.4
TAR383G0510 Trochodendron aralioides HOM05D007649 ORTHO05D009668 1.1e-23 113.2 90 70.0
GSVIVG01035747001 Vitis vinifera HOM05D007649 ORTHO05D009668 1.5e-23 112.8 95 60.0
Gohir.D07G028200 Gossypium hirsutum HOM05D007649 ORTHO05D009668 4.2e-23 111.3 96 64.6
Gorai.001G029500 Gossypium raimondii HOM05D007649 ORTHO05D009668 4.2e-23 111.3 96 64.6
MELO3C003657.2 Cucumis melo HOM05D007649 ORTHO05D009668 9.4e-23 110.2 77 70.1
CsaV3_3G046810 Cucumis sativus L. HOM05D007649 ORTHO05D009668 1.2e-22 109.8 78 69.2
Cpa.g.sc205.32 Carica papaya HOM05D007649 ORTHO05D009668 2.1e-22 109.0 94 62.8
ClCG05G017300 Citrullus lanatus HOM05D007649 ORTHO05D009668 2.1e-22 109.0 78 69.2
Manes.16G069200 Manihot esculenta HOM05D007649 ORTHO05D009668 3.6e-22 108.2 85 67.1
Prupe.1G464700 Prunus persica HOM05D007649 ORTHO05D009668 3.6e-22 108.2 93 62.4
Atru.chr7.2308 Acer truncatum HOM05D007649 ORTHO05D009668 4.7e-22 107.8 95 62.1
HanXRQChr10g0313021 Helianthus annuus HOM05D007649 ORTHO05D009668 6.1e-22 107.5 96 59.4
Nn2g11782 Nelumbo nucifera HOM05D007649 ORTHO05D009668 8.0e-22 107.1 77 68.8
Actinidia13297 Actinidia chinensis HOM05D007649 ORTHO05D009668 1.4e-21 106.3 97 61.9
Duzib150G1676 Durio zibethinus HOM05D007649 ORTHO05D009668 1.4e-21 106.3 99 63.6
AL6G37400 Arabidopsis lyrata HOM05D007649 ORTHO05D009668 2.3e-21 105.5 99 60.6
Duzib168G0100 Durio zibethinus HOM05D007649 ORTHO05D009668 3.0e-21 105.1 98 65.3
FvH4_7g03290 Fragaria vesca HOM05D007649 ORTHO05D009668 6.7e-21 104.0 95 60.0
Lsat_1_v5_gn_6_8481 Lactuca sativa HOM05D007649 ORTHO05D009668 6.7e-21 104.0 94 60.6
Aqoxy7G01751 Aquilegia oxysepala HOM05D007649 ORTHO05D009668 1.1e-20 103.2 93 61.3
ECA233G5733 Erigeron canadensis HOM05D007649 ORTHO05D009668 1.1e-20 103.2 94 59.6
Hund02998 Selenicereus undatus HOM05D007649 ORTHO05D009668 1.1e-20 103.2 88 56.8
CARHR187800 Cardamine hirsuta HOM05D007649 ORTHO05D009668 1.5e-20 102.8 99 59.6
Carub.0006s2344 Capsella rubella HOM05D007649 ORTHO05D009668 2.6e-20 102.1 99 59.6
THA.LOC104799213 Tarenaya hassleriana HOM05D007649 ORTHO05D009668 2.6e-20 102.1 79 67.1
Cc08_g08160 Coffea canephora HOM05D007649 ORTHO05D009668 3.3e-20 101.7 94 55.3
Nitab4.5_0012591g0010 Nicotiana tabacum HOM05D007649 ORTHO05D009668 7.4e-20 100.5 78 62.8
Sopen08g021900 Solanum pennellii HOM05D007649 ORTHO05D009668 7.4e-20 100.5 82 59.8
AT5G25570 Arabidopsis thaliana HOM05D007649 ORTHO05D009668 1.3e-19 99.8 99 60.6
Sp2g21960 Schrenkiella parvula HOM05D007649 ORTHO05D009668 1.3e-19 99.8 99 59.6
Sed0003009 Sechium edule HOM05D007649 ORTHO05D009668 1.3e-19 99.8 73 69.9
Thhalv10005188m.g Eutrema salsugineum HOM05D007649 ORTHO05D009668 1.7e-19 99.4 98 58.2
Sed0022915 Sechium edule HOM05D007649 ORTHO05D009668 1.7e-19 99.4 84 63.1
arahy.Tifrunner.gnm1.ann1.0NF80D Arachis hypogaea HOM05D007649 ORTHO05D009668 2.2e-19 99.0 88 62.5
arahy.Tifrunner.gnm1.ann1.3N1A5Y Arachis hypogaea HOM05D007649 ORTHO05D009668 2.2e-19 99.0 88 62.5
AUR62024825 Chenopodium quinoa HOM05D007649 ORTHO05D009668 2.2e-19 99.0 86 55.8
PSO063G4106 Papaver somniferum HOM05D007649 ORTHO05D009668 2.2e-19 99.0 74 70.3
TWI63G0355 Tripterygium wilfordii HOM05D007649 ORTHO05D009668 3.7e-19 98.2 91 56.0
MBI04_g10458_MAGBIO Magnolia biondii HOM05D007649 ORTHO05D009668 4.8e-19 97.8 67 71.6
C02p59430 Brassica napus HOM05D007649 ORTHO05D009668 6.3e-19 97.4 95 60.0
AUR62032390 Chenopodium quinoa HOM05D007649 ORTHO05D009668 6.3e-19 97.4 86 55.8
Ciclev10010030m.g Citrus clementina HOM05D007649 ORTHO05D009668 6.3e-19 97.4 98 61.2
MD08G1134800 Malus domestica HOM05D007649 ORTHO05D009668 6.3e-19 97.4 95 61.1
Psat5g025760 Pisum sativum HOM05D007649 ORTHO05D009668 6.3e-19 97.4 78 64.1
Rhsim07G0149600 Rhododendron simsii HOM05D007649 ORTHO05D009668 6.3e-19 97.4 67 71.6
Migut.N01074 Erythranthe guttata HOM05D007649 ORTHO05D009668 8.2e-19 97.1 73 67.1
A06p36270 Brassica napus HOM05D007649 ORTHO05D009668 1.1e-18 96.7 95 58.9
BraA06t26549Z Brassica rapa HOM05D007649 ORTHO05D009668 1.1e-18 96.7 95 58.9
CAN.G1384.1 Capsicum annuum HOM05D007649 ORTHO05D009668 1.8e-18 95.9 93 53.8
Nitab4.5_0000250g0070 Nicotiana tabacum HOM05D007649 ORTHO05D009668 2.4e-18 95.5 94 54.3
Glyma.06G074500 Glycine max HOM05D007649 ORTHO05D009668 4.1e-18 94.7 85 55.3
Glyma.04G073400 Glycine max HOM05D007649 ORTHO05D009668 5.3e-18 94.4 85 56.5
Peaxi162Scf00105g01010 Petunia axillaris HOM05D007649 ORTHO05D009668 5.3e-18 94.4 87 55.2
Aa31LG11G4690 Aethionema arabicum HOM05D007649 ORTHO05D009668 1.6e-17 92.8 93 57.0
Potri.006G245100 Populus trichocarpa HOM05D007649 ORTHO05D009668 1.6e-17 92.8 95 57.9
Eucgr.C02878 Eucalyptus grandis HOM05D007649 ORTHO05D009668 2.0e-17 92.4 68 67.6
RcHm_v2.0_Chr1g0325561 Rosa chinensis HOM05D007649 ORTHO05D009668 2.6e-17 92.0 100 56.0
Lj1g0000027 Lotus japonicus HOM05D007649 ORTHO05D009668 5.9e-17 90.9 85 56.5
Medtr3g108310 Medicago truncatula HOM05D007649 ORTHO05D009668 5.9e-17 90.9 89 56.2
TPR.G12493 Trifolium pratense HOM05D007649 ORTHO05D009668 7.7e-17 90.5 75 64.0
FAN10G0583 Fragaria x ananassa HOM05D007649 ORTHO05D009668 1.3e-16 89.7 122 46.7
CSS0042406 Camellia sinensis var. sinensis HOM05D007649 ORTHO05D009668 1.7e-16 89.4 87 59.8
EL10Ac2g02528 Beta vulgaris HOM05D007649 ORTHO05D009668 2.9e-16 88.6 73 58.9
Potri.012G125000 Populus trichocarpa HOM05D007649 ORTHO05D009668 2.9e-16 88.6 95 56.8
SalBow4G3148 Salvia bowleyana HOM05D007649 ORTHO05D009668 5.0e-16 87.8 77 59.7
CDE05G1266 Ceratophyllum demersum HOM05D007649 ORTHO05D009668 1.1e-15 86.7 97 51.5
BolC7t44754H Brassica oleracea HOM05D007649 ORTHO05D009668 1.9e-15 85.9 65 66.2
Phvul.009G099200 Phaseolus vulgaris HOM05D007649 ORTHO05D009668 2.5e-15 85.5 85 52.9
Solyc08g067980.3 Solanum lycopersicum HOM05D007649 ORTHO05D009668 3.2e-15 85.1 94 48.9
Oeu033993.1 Olea europaea HOM05D007649 ORTHO05D009668 1.2e-14 83.2 64 68.8
Oeu033995.1 Olea europaea HOM05D007649 ORTHO05D009668 1.2e-14 83.2 64 68.8
Sc09g0008910 Simmondsia chinensis HOM05D007649 ORTHO05D009668 1.6e-14 82.8 77 55.8
BolC2t12006H Brassica oleracea HOM05D007649 ORTHO05D009668 2.1e-14 82.4 75 58.7
Sabra06G0191900 Salix brachista HOM05D007649 ORTHO05D009668 4.7e-14 81.3 65 64.6
ATR0037G059 Amborella trichopoda HOM05D007649 ORTHO05D009668 6.1e-14 80.9 89 56.2
PGSC0003DMG400014488 Solanum tuberosum HOM05D007649 ORTHO05D009668 1.4e-13 79.7 58 63.8
vmacro05350 Vaccinium macrocarpon HOM05D007649 ORTHO05D009668 2.0e-12 75.9 50 72.0
Gohir.A07G024600 Gossypium hirsutum HOM05D007649 ORTHO05D009668 3.4e-12 75.1 82 53.7
FAN03G3370 Fragaria x ananassa HOM05D007649 ORTHO05D009668 1.7e-11 72.8 104 45.2
TWI34G1739 Tripterygium wilfordii HOM05D007649 ORTHO05D009668 2.8e-11 72.0 76 52.6
FAN06G3614 Fragaria x ananassa HOM05D007649 ORTHO05D009668 4.8e-11 71.2 56 64.3
Ah.12g060320 Amaranthus hybridus HOM05D007649 ORTHO05D009668 8.3e-11 70.5 98 42.9
Os05g0180700 Oryza sativa ssp. japonica HOM05D007649 ORTHO05D009668 1.6e-09 66.2 106 39.6
Actinidia14648 Actinidia chinensis HOM05D007649 ORTHO05D009668 2.0e-09 65.9 64 59.4
Prupe.3G140100 Prunus persica HOM05D007649 ORTHO05D009668 4.2e-07 58.2 52 57.7


User provided reference genes

Program Settings