Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G0086 Cannabis sativa HOM05D005472 ORTHO05D005897 1.1e-176 623.2 341 100.0
Prupe.1G365300 Prunus persica HOM05D005472 ORTHO05D005897 1.8e-76 290.4 359 50.7
GSVIVG01009906001 Vitis vinifera HOM05D005472 ORTHO05D005897 3.3e-67 259.6 366 48.6
Thecc.08G044600 Theobroma cacao HOM05D005472 ORTHO05D005897 1.7e-66 257.3 358 46.6
QL02p011634 Quercus lobata HOM05D005472 ORTHO05D005897 1.5e-62 244.2 349 46.4
COL.COLO4_26145 Corchorus olitorius HOM05D005472 ORTHO05D005897 3.2e-62 243.0 348 46.0
Duzib041G0268 Durio zibethinus HOM05D005472 ORTHO05D005897 4.2e-62 242.7 351 45.3
Cc10_g01680 Coffea canephora HOM05D005472 ORTHO05D005897 7.2e-62 241.9 339 44.0
Nn1g05892 Nelumbo nucifera HOM05D005472 ORTHO05D005897 2.1e-61 240.4 364 45.6
Gohir.A05G257000 Gossypium hirsutum HOM05D005472 ORTHO05D005897 3.0e-60 236.5 358 43.0
CiPaw.07G149800 Carya illinoinensis HOM05D005472 ORTHO05D005897 4.0e-60 236.1 354 45.2
Potri.005G239500 Populus trichocarpa HOM05D005472 ORTHO05D005897 5.2e-60 235.7 356 43.8
Sed0019370 Sechium edule HOM05D005472 ORTHO05D005897 8.8e-60 235.0 357 42.6
ClCG05G018260 Citrullus lanatus HOM05D005472 ORTHO05D005897 1.2e-59 234.6 358 43.0
FvH4_2g38440 Fragaria vesca HOM05D005472 ORTHO05D005897 1.2e-59 234.6 364 42.3
TWI36G1185 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 1.2e-59 234.6 346 45.1
Gohir.D05G258500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 1.5e-59 234.2 358 42.7
FAN15G2782 Fragaria x ananassa HOM05D005472 ORTHO05D005897 3.3e-59 233.0 361 42.7
CiPaw.08G066500 Carya illinoinensis HOM05D005472 ORTHO05D005897 4.4e-59 232.6 341 46.3
Gorai.009G270000 Gossypium raimondii HOM05D005472 ORTHO05D005897 4.4e-59 232.6 358 42.5
Haze_22634 Corylus avellana HOM05D005472 ORTHO05D005897 7.5e-59 231.9 362 43.1
FAN27G2825 Fragaria x ananassa HOM05D005472 ORTHO05D005897 1.7e-58 230.7 366 42.1
RcHm_v2.0_Chr6g0302861 Rosa chinensis HOM05D005472 ORTHO05D005897 8.2e-58 228.4 370 41.9
Sabra05G0185100 Salix brachista HOM05D005472 ORTHO05D005897 1.1e-57 228.0 352 42.0
MELO3C011012.2 Cucumis melo HOM05D005472 ORTHO05D005897 1.4e-57 227.6 350 42.9
PGR031G2834 Punica granatum HOM05D005472 ORTHO05D005897 2.4e-57 226.9 355 43.9
MELO3C003750.2 Cucumis melo HOM05D005472 ORTHO05D005897 3.1e-57 226.5 363 42.1
ClCG08G014280 Citrullus lanatus HOM05D005472 ORTHO05D005897 2.0e-56 223.8 369 42.0
Atru.chr13.291 Acer truncatum HOM05D005472 ORTHO05D005897 2.7e-56 223.4 372 40.6
FAN20G3206 Fragaria x ananassa HOM05D005472 ORTHO05D005897 2.7e-56 223.4 366 41.5
TAR628G1150 Trochodendron aralioides HOM05D005472 ORTHO05D005897 3.5e-56 223.0 344 42.2
Solyc04g081450.3 Solanum lycopersicum HOM05D005472 ORTHO05D005897 5.9e-56 222.2 364 41.5
Eucgr.F00587 Eucalyptus grandis HOM05D005472 ORTHO05D005897 1.3e-55 221.1 364 42.0
PGSC0003DMG400009864 Solanum tuberosum HOM05D005472 ORTHO05D005897 2.2e-55 220.3 364 42.6
Gorai.009G194600 Gossypium raimondii HOM05D005472 ORTHO05D005897 5.0e-55 219.2 357 44.0
CsaV3_2G029530 Cucumis sativus L. HOM05D005472 ORTHO05D005897 1.5e-54 217.6 350 42.9
Gohir.A05G186500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 1.5e-54 217.6 358 43.6
Duzib116G0175 Durio zibethinus HOM05D005472 ORTHO05D005897 2.5e-54 216.9 296 45.9
MD15G1012000 Malus domestica HOM05D005472 ORTHO05D005897 4.2e-54 216.1 355 41.1
Peaxi162Scf00438g00827 Petunia axillaris HOM05D005472 ORTHO05D005897 4.2e-54 216.1 345 43.5
Sopen04g035060 Solanum pennellii HOM05D005472 ORTHO05D005897 5.5e-54 215.7 364 40.7
Cfa013951 Carpinus fangiana HOM05D005472 ORTHO05D005897 7.2e-54 215.3 311 43.4
Potri.002G022200 Populus trichocarpa HOM05D005472 ORTHO05D005897 1.6e-53 214.2 350 42.6
Sabra02G0018300 Salix brachista HOM05D005472 ORTHO05D005897 2.7e-53 213.4 350 42.3
CsaV3_3G045880 Cucumis sativus L. HOM05D005472 ORTHO05D005897 1.0e-52 211.5 315 42.2
THA.LOC104809508 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 2.0e-51 207.2 347 40.3
Lalb_Chr20g0120221 Lupinus albus HOM05D005472 ORTHO05D005897 4.4e-51 206.1 382 39.3
Glyma.15G134600 Glycine max HOM05D005472 ORTHO05D005897 1.7e-50 204.1 364 43.4
TWI12G0454 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 1.7e-50 204.1 306 44.8
Manes.18G013500 Manihot esculenta HOM05D005472 ORTHO05D005897 2.8e-50 203.4 343 39.4
VMungo0540G2141 Vigna mungo HOM05D005472 ORTHO05D005897 1.1e-49 201.4 362 43.1
Manes.05G147400 Manihot esculenta HOM05D005472 ORTHO05D005897 1.4e-49 201.1 343 41.1
CAN.G311.30 Capsicum annuum HOM05D005472 ORTHO05D005897 3.1e-49 199.9 363 39.7
PSO700G0202 Papaver somniferum HOM05D005472 ORTHO05D005897 3.1e-49 199.9 363 35.8
Phvul.006G124300 Phaseolus vulgaris HOM05D005472 ORTHO05D005897 9.1e-49 198.4 363 43.0
PSO170G4377 Papaver somniferum HOM05D005472 ORTHO05D005897 2.7e-48 196.8 363 35.3
Glyma.09G028700 Glycine max HOM05D005472 ORTHO05D005897 3.5e-48 196.4 379 41.4
THA.LOC104811410 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 3.5e-48 196.4 340 40.3
Aa31LG7G4450 Aethionema arabicum HOM05D005472 ORTHO05D005897 5.9e-48 195.7 325 41.2
Sed0011447 Sechium edule HOM05D005472 ORTHO05D005897 1.3e-47 194.5 353 39.9
Gohir.D05G189400 Gossypium hirsutum HOM05D005472 ORTHO05D005897 5.0e-47 192.6 286 45.5
TAR376G0796 Trochodendron aralioides HOM05D005472 ORTHO05D003948 5.0e-47 192.6 344 38.4
Dinv31847 Davidia involucrata HOM05D005472 ORTHO05D005897 6.5e-47 192.2 279 45.9
Nitab4.5_0002561g0030 Nicotiana tabacum HOM05D005472 ORTHO05D005897 6.5e-47 192.2 337 41.8
Ca_00891_v3 Cicer arietinum L. HOM05D005472 ORTHO05D005897 2.5e-46 190.3 401 36.9
Lj6g0021117 Lotus japonicus HOM05D005472 ORTHO05D005897 5.5e-46 189.1 375 41.1
AL1G32710 Arabidopsis lyrata HOM05D005472 ORTHO05D005897 1.6e-45 187.6 336 42.6
Thhalv10008122m.g Eutrema salsugineum HOM05D005472 ORTHO05D005897 1.8e-44 184.1 333 42.9
Sp1g17770 Schrenkiella parvula HOM05D005472 ORTHO05D005897 1.8e-44 184.1 335 39.4
AT1G19980 Arabidopsis thaliana HOM05D005472 ORTHO05D005897 5.2e-44 182.6 335 41.2
CARHR020470 Cardamine hirsuta HOM05D005472 ORTHO05D005897 5.2e-44 182.6 327 43.1
Ciclev10001635m.g Citrus clementina HOM05D005472 ORTHO05D005897 5.7e-43 179.1 391 35.8
Medtr2g031630 Medicago truncatula HOM05D005472 ORTHO05D005897 4.9e-42 176.0 357 39.5
Psat1g164760 Pisum sativum HOM05D005472 ORTHO05D005897 1.8e-41 174.1 369 36.3
Actinidia15422 Actinidia chinensis HOM05D005472 ORTHO05D005897 4.1e-41 172.9 341 35.8
Carub.0001s1951 Capsella rubella HOM05D005472 ORTHO05D005897 1.6e-40 171.0 334 40.1
BcaB03g12884 Brassica carinata HOM05D005472 ORTHO05D005897 2.0e-40 170.6 332 41.0
Hund05189 Selenicereus undatus HOM05D005472 ORTHO05D005897 2.7e-40 170.2 256 39.8
EL10Ac1g02216 Beta vulgaris HOM05D005472 ORTHO05D005897 1.0e-39 168.3 313 36.1
AUR62033908 Chenopodium quinoa HOM05D005472 ORTHO05D005897 3.8e-39 166.4 288 36.5
A08p29540 Brassica napus HOM05D005472 ORTHO05D005897 6.6e-39 165.6 331 39.6
BraA07t29336Z Brassica rapa HOM05D005472 ORTHO05D005897 6.6e-39 165.6 338 37.3
BraA08t34891Z Brassica rapa HOM05D005472 ORTHO05D005897 1.9e-38 164.1 332 39.8
TPR.G15190 Trifolium pratense HOM05D005472 ORTHO05D005897 5.6e-38 162.5 355 35.8
CSS0003502 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 9.5e-38 161.8 325 36.6
Atru.chr2.2949 Acer truncatum HOM05D005472 ORTHO05D005897 1.2e-37 161.4 220 45.9
BcaC07g39015 Brassica carinata HOM05D005472 ORTHO05D005897 1.2e-37 161.4 332 39.2
C08p19880 Brassica napus HOM05D005472 ORTHO05D005897 1.0e-36 158.3 332 38.6
BolC8t49626H Brassica oleracea HOM05D005472 ORTHO05D005897 1.4e-36 157.9 333 39.0
BolC7t42878H Brassica oleracea HOM05D005472 ORTHO05D005897 2.3e-36 157.1 326 35.6
arahy.Tifrunner.gnm1.ann1.C4XWSY Arachis hypogaea HOM05D000672 ORTHO05D000522 2.0e-35 154.1 356 37.6
BcaB03g14419 Brassica carinata HOM05D005472 ORTHO05D005897 2.0e-35 154.1 340 35.0
Lj4A797T57 Lonicera japonica HOM05D005472 ORTHO05D005897 2.0e-35 154.1 331 35.0
Cpa.g.sc26.42 Carica papaya HOM05D005472 ORTHO05D005897 2.6e-35 153.7 286 37.4
arahy.Tifrunner.gnm1.ann1.MUE9LA Arachis hypogaea HOM05D000672 ORTHO05D000522 5.7e-35 152.5 365 36.7
BcaB03g14348 Brassica carinata HOM05D005472 ORTHO05D005897 4.9e-34 149.4 343 33.5
AUR62041912 Chenopodium quinoa HOM05D005472 ORTHO05D005897 1.1e-33 148.3 291 37.8
SHI08069 Sapria himalayana HOM05D005472 ORTHO05D005897 1.1e-33 148.3 300 36.7
CDE05G3315 Ceratophyllum demersum HOM05D005472 ORTHO05D005897 1.4e-33 147.9 353 33.1
C07p23450 Brassica napus HOM05D005472 ORTHO05D005897 7.8e-32 142.1 343 33.8
MBI09_g31922_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 7.8e-32 142.1 251 37.8
vmacro07586 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 1.0e-31 141.7 339 31.9
Ah.00g000180 Amaranthus hybridus HOM05D005472 ORTHO05D005897 1.3e-31 141.4 352 29.3
Oeu007327.1 Olea europaea HOM05D005472 ORTHO05D005897 1.1e-30 138.3 378 36.2
HanXRQChr11g0322621 Helianthus annuus HOM05D005472 ORTHO05D005897 1.5e-30 137.9 327 31.8
DCAR_023016 Daucus carota HOM05D005472 ORTHO05D005897 4.3e-30 136.3 307 36.8
Ah.11g039690 Amaranthus hybridus HOM05D005472 ORTHO05D005897 1.2e-29 134.8 338 31.4
HanXRQChr05g0145181 Helianthus annuus HOM05D005472 ORTHO05D005897 1.2e-29 134.8 321 34.0
CANSAT78G2470 Cannabis sativa HOM05D005472 ORTHO05D005897 6.2e-29 132.5 136 54.4
vmacro21726 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 8.0e-29 132.1 339 31.3
CSS0003212 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 3.1e-28 130.2 321 33.3
Oeu054693.1 Olea europaea HOM05D005472 ORTHO05D005897 5.2e-28 129.4 277 39.7
MSTRG.1192 Avicennia marina HOM05D005472 ORTHO05D005897 2.6e-27 127.1 381 32.3
Lsat_1_v5_gn_9_46920 Lactuca sativa HOM05D005472 ORTHO05D005897 5.8e-27 125.9 346 34.4
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 1.7e-26 124.4 318 33.3
SalBow7G1801 Salvia bowleyana HOM05D005472 ORTHO05D005897 4.1e-25 119.8 372 30.6
Sc02g0008580 Simmondsia chinensis HOM05D005472 ORTHO05D005897 2.0e-24 117.5 368 32.3
Migut.C00835 Erythranthe guttata HOM05D005472 ORTHO05D005897 1.0e-23 115.2 366 30.3
A07p16090 Brassica napus HOM05D005472 ORTHO05D005897 5.0e-23 112.8 217 36.4
MD08G1013200 Malus domestica HOM05D005472 ORTHO05D005897 2.5e-22 110.5 155 45.8
PGR031G2226 Punica granatum HOM05D005472 ORTHO05D005897 7.3e-22 109.0 168 42.9
Rhsim06G0021600 Rhododendron simsii HOM05D005472 ORTHO05D005897 2.1e-21 107.5 359 32.6
ECA232G3880 Erigeron canadensis HOM05D005472 ORTHO05D005897 8.9e-20 102.1 324 30.9
ATR0810G127 Amborella trichopoda HOM05D005472 ORTHO05D005897 3.7e-18 96.7 241 29.9
HPP92_025683 Vanilla planifolia HOM05D005472 ORTHO05D005897 6.4e-18 95.9 240 28.8
MSTRG.25248 Avicennia marina HOM05D005472 ORTHO05D005897 2.1e-16 90.9 164 40.2
TWI56G0716 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 6.0e-16 89.4 164 37.2
MD00G1092800 Malus domestica HOM05D005472 ORTHO05D005897 1.0e-15 88.6 107 42.1
Actinidia16989 Actinidia chinensis HOM05D005472 ORTHO05D005897 1.7e-15 87.8 273 28.2
SGA_v2.0_scaffold11G05917 Striga asiatica HOM05D005472 ORTHO05D005897 2.3e-15 87.4 376 30.9
unitig_0.g2085 Utricularia gibba HOM05D005472 ORTHO05D005897 3.9e-15 86.7 360 30.6
CAN.G1271.17 Capsicum annuum HOM05D005472 ORTHO05D005897 1.9e-14 84.3 232 36.2
Os04g0117200 Oryza sativa ssp. japonica HOM05D005472 ORTHO05D005897 2.5e-14 84.0 247 31.2
Aqoxy5G01787 Aquilegia oxysepala HOM05D000073 ORTHO05D000033 7.3e-14 82.4 184 32.6
SEGI_34762 Sequoiadendron giganteum HOM05D005472 ORTHO05D005897 1.7e-10 71.2 266 25.2
Zm00001eb121210 Zea mays HOM05D005472 ORTHO05D005897 1.9e-09 67.8 216 27.8
SGA_v2.0_scaffold92G28230 Striga asiatica HOM05D005472 ORTHO05D005897 2.4e-09 67.4 360 25.6
Aqoxy2G01737 Aquilegia oxysepala HOM05D017957 ORTHO05D005897 1.0e-07 62.0 212 25.9
Aqoxy7G02104 Aquilegia oxysepala HOM05D003461 ORTHO05D005897 1.7e-07 61.2 266 24.1


User provided reference genes

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