Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G0040 Cannabis sativa HOM05D004520 ORTHO05D005520 3.1e-57 225.3 153 100.0
CANSAT25G0424 Cannabis sativa HOM05D004520 ORTHO05D005520 4.0e-52 208.4 130 96.2
FvH4_5g38140 Fragaria vesca HOM05D004520 ORTHO05D000031 2.4e-33 146.0 129 56.6
FAN13G2359 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.4e-33 146.0 129 56.6
FAN18G4472 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.4e-33 146.0 129 56.6
FAN08G3230 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.2e-32 143.7 128 57.0
FAN04G1722 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.7e-32 142.5 129 55.8
RcHm_v2.0_Chr7g0240121 Rosa chinensis HOM05D004520 ORTHO05D005520 2.7e-32 142.5 129 55.8
Haze_00561 Corylus avellana HOM05D004520 ORTHO05D005520 5.9e-32 141.4 124 57.3
MD15G1363200 Malus domestica HOM05D004520 ORTHO05D005520 4.3e-30 135.2 133 54.9
Prupe.1G510900 Prunus persica HOM05D004520 ORTHO05D005520 2.1e-29 132.9 132 54.5
Prupe.1G552400 Prunus persica HOM05D004520 ORTHO05D005520 4.7e-29 131.7 126 53.2
MD15G1408400 Malus domestica HOM05D004520 ORTHO05D005520 1.8e-28 129.8 120 57.5
QL12p035753 Quercus lobata HOM05D004520 ORTHO05D005520 2.3e-28 129.4 118 55.1
Cfa015929 Carpinus fangiana HOM05D004520 ORTHO05D005520 6.8e-28 127.9 118 56.8
Potri.002G092000 Populus trichocarpa HOM05D004520 ORTHO05D005520 8.9e-28 127.5 133 51.9
Dinv44735 Davidia involucrata HOM05D004520 ORTHO05D005520 2.0e-27 126.3 118 70.3
MD08G1176500 Malus domestica HOM05D004520 ORTHO05D005520 2.0e-27 126.3 131 53.4
Sabra05G0127200 Salix brachista HOM05D004520 ORTHO05D005520 9.8e-27 124.0 126 52.4
CiPaw.06G022900 Carya illinoinensis HOM05D004520 ORTHO05D005520 2.9e-26 122.5 139 49.6
COL.COLO4_16491 Corchorus olitorius HOM05D004520 ORTHO05D005520 2.9e-26 122.5 127 53.5
Potri.005G166900 Populus trichocarpa HOM05D004520 ORTHO05D005520 4.9e-26 121.7 133 51.1
Duzib041G0092 Durio zibethinus HOM05D004520 ORTHO05D005520 4.1e-25 118.6 129 51.2
Duzib041G0365 Durio zibethinus HOM05D004520 ORTHO05D005520 4.1e-25 118.6 129 51.2
TWI56G1051 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 7.0e-25 117.9 130 51.5
Gohir.A06G039100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 9.2e-25 117.5 119 50.4
CARHR022460 Cardamine hirsuta HOM05D004520 ORTHO05D005520 1.2e-24 117.1 125 52.0
CiPaw.05G232200 Carya illinoinensis HOM05D004520 ORTHO05D005520 1.2e-24 117.1 139 47.5
Duzib093G1357 Durio zibethinus HOM05D004520 ORTHO05D005520 1.6e-24 116.7 135 48.9
BcaB03g14234 Brassica carinata HOM05D004520 ORTHO05D005520 2.0e-24 116.3 125 53.6
Atru.chr13.1276 Acer truncatum HOM05D004520 ORTHO05D005520 2.7e-24 115.9 126 64.3
A07p14760 Brassica napus HOM05D004520 ORTHO05D005520 6.0e-24 114.8 118 55.1
BolC7t42702H Brassica oleracea HOM05D004520 ORTHO05D005520 6.0e-24 114.8 125 53.6
BraA07t29221Z Brassica rapa HOM05D004520 ORTHO05D005520 6.0e-24 114.8 118 55.1
Cc00_g24440 Coffea canephora HOM05D004520 ORTHO05D005520 1.0e-23 114.0 118 47.5
Gohir.D06G040100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.7e-23 113.2 119 50.4
Gorai.010G044800 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.7e-23 113.2 119 50.4
AL1G35550 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 2.3e-23 112.8 125 52.8
BcaC06g34928 Brassica carinata HOM05D004520 ORTHO05D005520 2.3e-23 112.8 125 61.6
BcaB07g32230 Brassica carinata HOM05D004520 ORTHO05D005520 3.0e-23 112.5 129 50.4
Lalb_Chr10g0102151 Lupinus albus HOM05D004520 ORTHO05D005520 3.9e-23 112.1 115 50.4
BcaC05g26135 Brassica carinata HOM05D004520 ORTHO05D005520 5.0e-23 111.7 129 51.9
C05p21170 Brassica napus HOM05D004520 ORTHO05D005520 5.0e-23 111.7 129 51.9
BolC5t30811H Brassica oleracea HOM05D004520 ORTHO05D005520 5.0e-23 111.7 129 51.9
Carub.0001s2166 Capsella rubella HOM05D004520 ORTHO05D005520 5.0e-23 111.7 125 52.0
TWI12G0901 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 5.0e-23 111.7 132 48.5
Manes.02G156600 Manihot esculenta HOM05D004520 ORTHO05D005520 6.6e-23 111.3 126 49.2
A09p42670 Brassica napus HOM05D004520 ORTHO05D005520 8.6e-23 110.9 129 51.9
BraA09t39742Z Brassica rapa HOM05D004520 ORTHO05D005520 8.6e-23 110.9 129 51.9
Thecc.08G113300 Theobroma cacao HOM05D004520 ORTHO05D005520 8.6e-23 110.9 130 50.8
C07p21720 Brassica napus HOM05D004520 ORTHO05D005520 1.1e-22 110.5 125 52.0
Duzib116G0626 Durio zibethinus HOM05D004520 ORTHO05D005520 1.1e-22 110.5 126 50.0
AT1G22110 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 1.5e-22 110.2 125 51.2
Lj1g0026094 Lotus japonicus HOM05D004520 ORTHO05D005520 1.9e-22 109.8 118 49.2
MD08G1219800 Malus domestica HOM05D004520 ORTHO05D005520 1.9e-22 109.8 61 82.0
PGR042G0053 Punica granatum HOM05D004520 ORTHO05D005520 4.3e-22 108.6 125 48.8
BcaC07g39145 Brassica carinata HOM05D003425 ORTHO05D003897 7.3e-22 107.8 117 50.4
Aa31LG7G6090 Aethionema arabicum HOM05D004520 ORTHO05D005520 9.5e-22 107.5 116 50.9
Oeu024567.1 Olea europaea HOM05D004520 ORTHO05D005520 9.5e-22 107.5 118 46.6
BolC8t49777H Brassica oleracea HOM05D004520 ORTHO05D005520 1.6e-21 106.7 117 49.6
Ciclev10003829m.g Citrus clementina HOM05D004520 ORTHO05D005520 3.6e-21 105.5 136 49.3
Ca_05234_v3 Cicer arietinum L. HOM05D004520 ORTHO05D005520 4.7e-21 105.1 116 47.4
BcaB03g11898 Brassica carinata HOM05D003425 ORTHO05D003897 8.1e-21 104.4 117 51.3
Glyma.14G168100 Glycine max HOM05D004520 ORTHO05D005520 1.1e-20 104.0 117 49.6
Medtr5g061650 Medicago truncatula HOM05D004520 ORTHO05D005520 1.8e-20 103.2 116 48.3
TPR.G39080 Trifolium pratense HOM05D004520 ORTHO05D005520 1.8e-20 103.2 119 47.1
Phvul.008G170000 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 4.0e-20 102.1 64 73.4
arahy.Tifrunner.gnm1.ann1.1581IW Arachis hypogaea HOM05D004520 ORTHO05D005520 6.8e-20 101.3 62 75.8
arahy.Tifrunner.gnm1.ann1.8K5I59 Arachis hypogaea HOM05D004520 ORTHO05D005520 6.8e-20 101.3 62 75.8
MBI02_g37831_MAGBIO Magnolia biondii HOM05D004520 ORTHO05D005520 6.8e-20 101.3 63 71.4
CDE10G0363 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 2.6e-19 99.4 63 69.8
CDE10G1290 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 2.6e-19 99.4 63 69.8
Migut.N02919 Erythranthe guttata HOM05D004520 ORTHO05D005520 2.6e-19 99.4 117 41.9
Gohir.A05G268200 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.6e-19 99.4 120 46.7
Gohir.D02G082633 Gossypium hirsutum HOM05D004520 ORTHO05D005520 3.4e-19 99.0 126 46.0
COL.COLO4_16493 Corchorus olitorius HOM05D004520 ORTHO05D005520 4.4e-19 98.6 63 73.0
Gohir.D05G269800 Gossypium hirsutum HOM05D004520 ORTHO05D005520 4.4e-19 98.6 120 47.5
Psat2g075760 Pisum sativum HOM05D004520 ORTHO05D005520 5.8e-19 98.2 113 46.0
Glyma.13G086100 Glycine max HOM05D004520 ORTHO05D005520 7.5e-19 97.8 64 71.9
Gorai.005G092700 Gossypium raimondii HOM05D004520 ORTHO05D005520 7.5e-19 97.8 126 45.2
Gohir.A02G075405 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.3e-18 97.1 63 71.4
PSO210G7148 Papaver somniferum HOM05D004520 ORTHO05D005520 1.7e-18 96.7 62 71.0
PSO447G0143 Papaver somniferum HOM05D004520 ORTHO05D005520 1.7e-18 96.7 62 71.0
Manes.18G070900 Manihot esculenta HOM05D004520 ORTHO05D005520 2.2e-18 96.3 64 68.8
Gorai.009G282400 Gossypium raimondii HOM05D004520 ORTHO05D005520 2.9e-18 95.9 120 45.8
Nitab4.5_0006678g0010 Nicotiana tabacum HOM05D004520 ORTHO05D005520 2.9e-18 95.9 120 43.3
Peaxi162Scf00160g01523 Petunia axillaris HOM05D004520 ORTHO05D005520 2.9e-18 95.9 117 43.6
Potri.005G169900 Populus trichocarpa HOM05D004520 ORTHO05D005520 2.9e-18 95.9 63 68.3
FAN08G0369 Fragaria x ananassa HOM05D004520 ORTHO05D005520 3.7e-18 95.5 62 72.6
FAN18G1022 Fragaria x ananassa HOM05D004520 ORTHO05D005520 3.7e-18 95.5 62 72.6
CiPaw.05G232100 Carya illinoinensis HOM05D004520 ORTHO05D005520 6.4e-18 94.7 63 69.8
Migut.C00189 Erythranthe guttata HOM05D004520 ORTHO05D005520 8.3e-18 94.4 121 43.0
Peaxi162Scf00168g00043 Petunia axillaris HOM05D004520 ORTHO05D005520 1.1e-17 94.0 128 41.4
FvH4_5g38160 Fragaria vesca HOM05D004520 ORTHO05D005520 1.4e-17 93.6 62 71.0
Gohir.A05G230000 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.4e-17 93.6 62 69.4
Gohir.D05G232300 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.4e-17 93.6 62 69.4
Gorai.009G240500 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.4e-17 93.6 62 69.4
Manes.02G156700 Manihot esculenta HOM05D004520 ORTHO05D005520 1.4e-17 93.6 63 69.8
FAN04G0088 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.9e-17 93.2 62 71.0
Nitab4.5_0002534g0030 Nicotiana tabacum HOM05D004520 ORTHO05D005520 2.4e-17 92.8 142 44.4
Sabra05G0127300 Salix brachista HOM05D004520 ORTHO05D005520 2.4e-17 92.8 63 63.5
FAN13G0916 Fragaria x ananassa HOM05D004520 ORTHO05D005520 4.1e-17 92.0 62 69.4
Thecc.08G113500 Theobroma cacao HOM05D004520 ORTHO05D005520 2.1e-16 89.7 63 68.3
Aqoxy6G00530 Aquilegia oxysepala HOM05D004520 ORTHO05D005520 3.5e-16 89.0 64 64.1
ClCG03G008910 Citrullus lanatus HOM05D004520 ORTHO05D005520 6.0e-16 88.2 64 64.1
Prupe.1G096600 Prunus persica HOM05D004520 ORTHO05D005520 6.0e-16 88.2 47 83.0
Sed0005622 Sechium edule HOM05D004520 ORTHO05D005520 6.0e-16 88.2 64 67.2
Solyc04g072650.1 Solanum lycopersicum HOM05D004520 ORTHO05D005520 1.0e-15 87.4 65 58.5
Actinidia10294 Actinidia chinensis HOM05D004520 ORTHO05D005520 1.3e-15 87.0 118 47.5
PGSC0003DMG400027533 Solanum tuberosum HOM05D004520 ORTHO05D005520 1.3e-15 87.0 65 58.5
ATR0564G398 Amborella trichopoda HOM05D004520 ORTHO05D005520 2.3e-15 86.3 61 63.9
Sopen04g028850 Solanum pennellii HOM05D004520 ORTHO05D005520 3.0e-15 85.9 65 58.5
Prupe.1G510300 Prunus persica HOM05D004520 ORTHO05D005520 6.6e-15 84.7 63 61.9
CARHR071410 Cardamine hirsuta HOM05D004520 ORTHO05D005520 1.1e-14 84.0 63 66.7
SalBow7G1906 Salvia bowleyana HOM05D004520 ORTHO05D005520 1.5e-14 83.6 117 37.6
Actinidia10293 Actinidia chinensis HOM05D001087 ORTHO05D005520 5.6e-14 81.6 63 60.3
CSS0017832 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 1.6e-13 80.1 118 42.4
CSS0031359 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 1.6e-13 80.1 118 42.4
TPR.G34 Trifolium pratense HOM05D004520 ORTHO05D005520 1.6e-13 80.1 116 41.4
AT1G77932 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 8.1e-13 77.8 51 72.5
Cpa.g.sc66.103 Carica papaya HOM05D004520 ORTHO05D005520 8.1e-13 77.8 63 58.7
SalBow6G4633 Salvia bowleyana HOM05D004520 ORTHO05D005520 1.1e-12 77.4 64 54.7
AL2G38200 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 1.8e-12 76.6 50 72.0
Rhsim06G0085800 Rhododendron simsii HOM05D004520 ORTHO05D005520 1.8e-12 76.6 118 40.7
CAN.G535.13 Capsicum annuum HOM05D004520 ORTHO05D005520 3.1e-12 75.9 46 71.7
SalBow6G1129 Salvia bowleyana HOM05D004520 ORTHO05D005520 3.1e-12 75.9 64 53.1
A08p28610 Brassica napus HOM05D003425 ORTHO05D003897 1.2e-11 73.9 116 39.7
BraA08t34791Z Brassica rapa HOM05D003425 ORTHO05D003897 1.2e-11 73.9 116 39.7
MD15G1409900 Malus domestica HOM05D004520 ORTHO05D005520 1.2e-11 73.9 63 57.1
Phvul.009G027500 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 1.5e-11 73.6 113 42.5
SEGI_20648 Sequoiadendron giganteum HOM05D004520 ORTHO05D005520 1.5e-11 73.6 54 61.1
Carub.0002s2483 Capsella rubella HOM05D004520 ORTHO05D005520 3.4e-11 72.4 63 60.3
SGA_v2.0_scaffold315G48386 Striga asiatica HOM05D004520 ORTHO05D005520 4.4e-11 72.0 117 47.9
Lsat_1_v5_gn_9_44740 Lactuca sativa HOM05D004520 ORTHO05D005520 8.4e-10 67.8 119 36.1
C08p21380 Brassica napus HOM05D003425 ORTHO05D003897 1.1e-09 67.4 116 37.9
MELO3C022816.2 Cucumis melo HOM05D004520 ORTHO05D005520 1.1e-09 67.4 114 38.6
QL12p035728 Quercus lobata HOM05D004520 ORTHO05D005520 1.9e-09 66.6 64 53.1
Sp1g19610 Schrenkiella parvula HOM05D004520 ORTHO05D005520 2.4e-09 66.2 92 52.2
CsaV3_5G023810 Cucumis sativus L. HOM05D004520 ORTHO05D005520 4.1e-09 65.5 114 38.6
Atru.chr3.816 Acer truncatum HOM05D004520 ORTHO05D005520 9.2e-09 64.3 121 37.2
Haze_00560 Corylus avellana HOM05D004520 ORTHO05D005520 9.2e-09 64.3 63 54.0
Haze_00569 Corylus avellana HOM05D004520 ORTHO05D005520 9.2e-09 64.3 63 54.0
CsaV3_5G023830 Cucumis sativus L. HOM05D004520 ORTHO05D005520 9.2e-09 64.3 65 53.8
Cfa015930 Carpinus fangiana HOM05D004520 ORTHO05D005520 1.2e-08 63.9 63 52.4
Oeu061390.1 Olea europaea HOM05D004520 ORTHO05D005520 4.6e-08 62.0 43 60.5
Dinv13052 Davidia involucrata HOM05D004520 ORTHO05D005520 6.0e-08 61.6 48 56.2
TAR381G0361 Trochodendron aralioides HOM05D004520 ORTHO05D005520 6.0e-08 61.6 37 73.0
MELO3C022817.2 Cucumis melo HOM05D004520 ORTHO05D005520 1.7e-07 60.1 65 47.7
ClCG03G008900 Citrullus lanatus HOM05D004520 ORTHO05D005520 2.3e-07 59.7 120 35.8
Lj4P108T23 Lonicera japonica HOM05D004520 ORTHO05D005520 3.9e-07 58.9 64 45.3
Cc01_g09000 Coffea canephora HOM05D004622 ORTHO05D005431 6.6e-07 58.2 64 45.3
Ca_01655_v3 Cicer arietinum L. HOM05D004622 ORTHO05D005431 8.6e-07 57.8 64 42.2
THA.LOC104816921 Tarenaya hassleriana HOM05D004520 ORTHO05D005520 8.6e-07 57.8 42 64.3
Lj3g0018609 Lotus japonicus HOM05D004622 ORTHO05D005431 1.5e-06 57.0 64 40.6
SMO347G0415 Selaginella moellendorffii HOM05D028425 ORTHO05D005520 1.9e-06 56.6 66 48.5
Rhsim01G0204900 Rhododendron simsii HOM05D004622 ORTHO05D005431 2.5e-06 56.2 64 42.2
Cpa.g.sc195.4 Carica papaya HOM05D004622 ORTHO05D005431 4.3e-06 55.5 64 45.3
unitig_578.g16210 Utricularia gibba HOM05D004520 ORTHO05D005520 4.3e-06 55.5 59 52.5
Glyma.13G315900 Glycine max HOM05D004622 ORTHO05D005431 5.6e-06 55.1 64 40.6
unitig_0.g1476 Utricularia gibba HOM05D000020 ORTHO05D000543 5.6e-06 55.1 63 42.9


User provided reference genes

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