Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G2498 Cannabis sativa HOM05D005346 ORTHO05D007051 2.5e-114 415.6 234 100.0
CiPaw.12G104700 Carya illinoinensis HOM05D005346 ORTHO05D007051 9.9e-79 297.4 238 76.9
Haze_09052 Corylus avellana HOM05D005346 ORTHO05D007051 2.2e-78 296.2 234 71.8
Cfa012017 Carpinus fangiana HOM05D005346 ORTHO05D007051 4.9e-78 295.0 234 71.8
QL05p030033 Quercus lobata HOM05D005346 ORTHO05D007051 3.5e-76 288.9 235 75.7
QL12p015018 Quercus lobata HOM05D005346 ORTHO05D007051 3.5e-76 288.9 235 75.7
Duzib084G0498 Durio zibethinus HOM05D005346 ORTHO05D007051 4.6e-76 288.5 235 74.0
FAN04G2793 Fragaria x ananassa HOM05D000062 ORTHO05D007051 1.8e-75 286.6 236 73.7
arahy.Tifrunner.gnm1.ann1.FP1HKG Arachis hypogaea HOM05D005346 ORTHO05D007051 3.0e-75 285.8 182 89.0
Prupe.5G079700 Prunus persica HOM05D005346 ORTHO05D007051 3.0e-75 285.8 235 76.2
GSVIVG01004909001 Vitis vinifera HOM05D005346 ORTHO05D007051 3.9e-75 285.4 241 71.8
Cpa.g.sc29.89 Carica papaya HOM05D005346 ORTHO05D007051 8.7e-75 284.3 245 72.7
MELO3C013984.2 Cucumis melo HOM05D005346 ORTHO05D007051 1.9e-74 283.1 237 75.1
Gorai.003G166600 Gossypium raimondii HOM05D005346 ORTHO05D007051 3.3e-74 282.3 234 73.1
Lj4g0017997 Lotus japonicus HOM05D005346 ORTHO05D007051 3.3e-74 282.3 240 70.8
Glyma.17G135200 Glycine max HOM05D005346 ORTHO05D007051 5.6e-74 281.6 229 74.2
RcHm_v2.0_Chr7g0201521 Rosa chinensis HOM05D005346 ORTHO05D007051 5.6e-74 281.6 236 73.7
Dinv39076 Davidia involucrata HOM05D005346 ORTHO05D007051 7.4e-74 281.2 239 69.0
FvH4_5g00690 Fragaria vesca HOM05D005346 ORTHO05D007051 9.6e-74 280.8 236 72.5
FAN13G0616 Fragaria x ananassa HOM05D005346 ORTHO05D007051 9.6e-74 280.8 236 72.5
MD04G1079400 Malus domestica HOM05D005346 ORTHO05D007051 9.6e-74 280.8 235 74.5
CsaV3_3G003190 Cucumis sativus L. HOM05D005346 ORTHO05D007051 1.6e-73 280.0 242 73.6
Eucgr.E00475 Eucalyptus grandis HOM05D005346 ORTHO05D007051 2.8e-73 279.3 234 72.2
Gohir.A03G011800 Gossypium hirsutum HOM05D005346 ORTHO05D007051 4.8e-73 278.5 234 73.1
Phvul.003G215000 Phaseolus vulgaris HOM05D005346 ORTHO05D007051 3.1e-72 275.8 232 73.7
PGR042G0462 Punica granatum HOM05D005346 ORTHO05D007051 6.9e-72 274.6 234 71.4
TWI60G0731 Tripterygium wilfordii HOM05D005346 ORTHO05D007051 6.9e-72 274.6 237 70.5
Potri.003G115300 Populus trichocarpa HOM05D005346 ORTHO05D007051 9.0e-72 274.2 234 72.6
Actinidia02088 Actinidia chinensis HOM05D005346 ORTHO05D007051 2.0e-71 273.1 238 66.8
TAR629G0356 Trochodendron aralioides HOM05D005346 ORTHO05D007051 2.6e-71 272.7 236 70.3
VMungo1215G1290 Vigna mungo HOM05D005346 ORTHO05D007051 3.4e-71 272.3 189 81.5
Atru.chr9.1434 Acer truncatum HOM05D005346 ORTHO05D007051 4.5e-71 271.9 239 69.9
Manes.01G073500 Manihot esculenta HOM05D005346 ORTHO05D007051 9.9e-71 270.8 243 71.2
Nn4g26377 Nelumbo nucifera HOM05D005346 ORTHO05D007051 9.9e-71 270.8 232 72.0
Sed0008355 Sechium edule HOM05D005346 ORTHO05D007051 1.3e-70 270.4 266 66.9
Lalb_Chr05g0225391 Lupinus albus HOM05D005346 ORTHO05D007051 1.7e-70 270.0 231 71.4
THA.LOC104809446 Tarenaya hassleriana HOM05D005346 ORTHO05D007051 3.8e-70 268.9 241 70.1
COL.COLO4_23877 Corchorus olitorius HOM05D005346 ORTHO05D007051 4.9e-70 268.5 254 68.1
Potri.001G117500 Populus trichocarpa HOM05D005346 ORTHO05D007051 1.1e-69 267.3 238 69.3
CSS0047104 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 9.3e-69 264.2 237 65.8
MBI12_g34008_MAGBIO Magnolia biondii HOM05D005346 ORTHO05D007051 9.3e-69 264.2 186 79.6
Sabra03G0079900 Salix brachista HOM05D005346 ORTHO05D007051 1.6e-68 263.5 174 85.1
CSS0010264 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 4.6e-68 261.9 237 65.4
CSS0033087 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 6.0e-68 261.5 245 63.7
Ciclev10021953m.g Citrus clementina HOM05D005346 ORTHO05D007051 7.9e-68 261.2 239 68.2
Psat4g068640 Pisum sativum HOM05D005346 ORTHO05D007051 7.9e-68 261.2 238 68.1
DCAR_006800 Daucus carota HOM05D005346 ORTHO05D007051 2.3e-67 259.6 180 75.6
Medtr4g102230 Medicago truncatula HOM05D005346 ORTHO05D007051 2.3e-67 259.6 191 78.5
A09p15920 Brassica napus HOM05D005346 ORTHO05D007051 1.5e-66 256.9 235 68.5
BraA09t37228Z Brassica rapa HOM05D005346 ORTHO05D007051 1.5e-66 256.9 235 68.5
Carub.0002s0213 Capsella rubella HOM05D005346 ORTHO05D007051 3.3e-66 255.8 239 67.4
BcaC04g22452 Brassica carinata HOM05D005346 ORTHO05D007051 4.3e-66 255.4 238 67.6
TAR629G0085 Trochodendron aralioides HOM05D005346 ORTHO05D007051 4.3e-66 255.4 182 80.2
ATR0579G161 Amborella trichopoda HOM05D005346 ORTHO05D007051 7.4e-66 254.6 187 76.5
BolC9t54826H Brassica oleracea HOM05D005346 ORTHO05D007051 2.1e-65 253.1 238 67.2
PSO478G1917 Papaver somniferum HOM05D005346 ORTHO05D007051 2.1e-65 253.1 185 74.6
C09p19170 Brassica napus HOM05D005346 ORTHO05D007051 2.8e-65 252.7 238 67.2
AT1G62850 Arabidopsis thaliana HOM05D005346 ORTHO05D007051 4.8e-65 251.9 236 66.1
Zm00001eb010680 Zea mays HOM05D005346 ORTHO05D007051 6.2e-65 251.5 203 70.9
Peaxi162Scf00271g00130 Petunia axillaris HOM05D005346 ORTHO05D007051 1.1e-64 250.8 228 62.7
Aa31LG2G370 Aethionema arabicum HOM05D005346 ORTHO05D007051 1.8e-64 250.0 236 66.1
PSO782G1275 Papaver somniferum HOM05D005346 ORTHO05D007051 1.8e-64 250.0 234 62.4
HPP92_003521 Vanilla planifolia HOM05D005346 ORTHO05D007051 1.8e-64 250.0 192 74.0
BcaB07g31363 Brassica carinata HOM05D005346 ORTHO05D007051 2.4e-64 249.6 237 66.7
Cc08_g13250 Coffea canephora HOM05D005346 ORTHO05D007051 2.4e-64 249.6 238 62.6
Sc22g0000580 Simmondsia chinensis HOM05D005346 ORTHO05D007051 4.0e-64 248.8 188 76.6
HanXRQChr17g0549091 Helianthus annuus HOM05D005346 ORTHO05D007051 5.3e-64 248.4 234 65.4
Sopen08g027860 Solanum pennellii HOM05D005346 ORTHO05D007051 5.3e-64 248.4 235 60.0
AL2G12910 Arabidopsis lyrata HOM05D005346 ORTHO05D007051 6.9e-64 248.1 236 64.8
Aqoxy7G00648 Aquilegia oxysepala HOM05D005346 ORTHO05D007051 9.0e-64 247.7 234 64.5
Sabra01G0090200 Salix brachista HOM05D005346 ORTHO05D007051 1.2e-63 247.3 168 83.3
Thhalv10023661m.g Eutrema salsugineum HOM05D005346 ORTHO05D007051 2.6e-63 246.1 242 64.9
Lsat_1_v5_gn_6_9800 Lactuca sativa HOM05D005346 ORTHO05D007051 2.6e-63 246.1 192 69.3
Nitab4.5_0012948g0030 Nicotiana tabacum HOM05D005346 ORTHO05D007051 2.6e-63 246.1 246 59.8
CAN.G630.80 Capsicum annuum HOM05D005346 ORTHO05D007051 5.8e-63 245.0 241 58.9
CDE11G0613 Ceratophyllum demersum HOM05D005346 ORTHO05D007051 5.8e-63 245.0 213 68.1
EL10Ac5g12617 Beta vulgaris HOM05D005346 ORTHO05D007051 7.6e-63 244.6 237 65.8
Hma1.2p1_0138F.1_g063170 Hydrangea macrophylla HOM05D005346 ORTHO05D007051 7.6e-63 244.6 187 70.6
Solyc08g079490.4 Solanum lycopersicum HOM05D005346 ORTHO05D007051 1.0e-62 244.2 236 58.9
CARHR048890 Cardamine hirsuta HOM05D005346 ORTHO05D007051 1.7e-62 243.4 239 64.9
ClCG10G003160 Citrullus lanatus HOM05D005346 ORTHO05D007051 1.7e-62 243.4 258 66.7
Rhsim07G0101400 Rhododendron simsii HOM05D005346 ORTHO05D007051 2.2e-62 243.0 236 60.6
Sp2g01760 Schrenkiella parvula HOM05D005346 ORTHO05D007051 1.1e-61 240.7 241 63.5
MSTRG.25547 Avicennia marina HOM05D005346 ORTHO05D007051 1.4e-61 240.4 241 59.8
AUR62010513 Chenopodium quinoa HOM05D005346 ORTHO05D007051 1.4e-61 240.4 237 61.6
AUR62017389 Chenopodium quinoa HOM05D005346 ORTHO05D007051 1.4e-61 240.4 237 61.2
Oeu016508.1 Olea europaea HOM05D005346 ORTHO05D007051 2.5e-61 239.6 239 60.7
SGA_v2.0_scaffold120G32813 Striga asiatica HOM05D002260 ORTHO05D000476 7.1e-61 238.0 183 71.0
ECA233G1833 Erigeron canadensis HOM05D005346 ORTHO05D007051 4.6e-60 235.3 187 74.9
Hund28689 Selenicereus undatus HOM05D005346 ORTHO05D007051 4.6e-60 235.3 240 64.2
Hund28691 Selenicereus undatus HOM05D005346 ORTHO05D007051 4.6e-60 235.3 240 64.2
PGSC0003DMG400003934 Solanum tuberosum HOM05D005346 ORTHO05D007051 1.1e-58 230.7 266 52.6
Lj8A255T54 Lonicera japonica HOM05D005346 ORTHO05D007051 2.8e-57 226.1 248 56.0
Migut.E01045 Erythranthe guttata HOM05D005346 ORTHO05D007051 1.4e-56 223.8 192 65.1
SGA_v2.0_scaffold146G36182 Striga asiatica HOM05D005346 ORTHO05D007051 1.4e-56 223.8 252 56.0
Ca_12281_v3 Cicer arietinum L. HOM05D002260 ORTHO05D007051 5.3e-56 221.9 150 82.7
Thecc.03G262000 Theobroma cacao HOM05D005346 ORTHO05D007051 1.5e-55 220.3 182 67.6
unitig_749.g13414 Utricularia gibba HOM05D005346 ORTHO05D007051 1.5e-55 220.3 240 54.2
Os03g0249200 Oryza sativa ssp. japonica HOM05D005346 ORTHO05D007051 3.4e-55 219.2 191 68.6
Glyma.05G052900 Glycine max HOM05D005346 ORTHO05D007051 1.7e-54 216.9 205 62.9
Gohir.D03G158100 Gossypium hirsutum HOM05D005346 ORTHO05D007051 4.6e-52 208.8 234 60.7
vmacro14041 Vaccinium macrocarpon HOM05D005346 ORTHO05D007051 6.1e-52 208.4 218 58.7
SalBow6G4970 Salvia bowleyana HOM05D005346 ORTHO05D007051 1.9e-50 203.4 182 62.6
SEGI_23485 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 7.4e-50 201.4 168 64.3
TPR.G37664 Trifolium pratense HOM05D005346 ORTHO05D007051 1.5e-47 193.7 188 60.6
MSTRG.12059 Avicennia marina HOM05D005346 ORTHO05D007051 7.7e-47 191.4 188 59.6
Pp3c9_5680 Physcomitrium patens HOM05D005346 ORTHO05D007051 1.1e-45 187.6 180 58.3
arahy.Tifrunner.gnm1.ann1.IL3HUZ Arachis hypogaea HOM05D005346 ORTHO05D007051 2.5e-45 186.4 325 47.4
SGA_v2.0_scaffold196G40944 Striga asiatica HOM05D005346 ORTHO05D007051 7.9e-44 181.4 192 54.2
SEGI_25852 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 9.7e-42 174.5 125 80.8
CBR_g59652 Chara braunii HOM05D005346 ORTHO05D007051 6.9e-40 168.3 172 57.6
Mapoly0185s0016 Marchantia polymorpha HOM05D005346 ORTHO05D007051 1.3e-38 164.1 179 55.9
SalBow1G0489 Salvia bowleyana HOM05D005346 ORTHO05D007051 3.0e-35 152.9 173 52.6
Gorai.011G192800 Gossypium raimondii HOM05D005346 ORTHO05D007051 2.6e-34 149.8 100 75.0
Gohir.D06G129850 Gossypium hirsutum HOM05D005346 ORTHO05D007051 2.8e-33 146.4 100 74.0
Gorai.005G179200 Gossypium raimondii HOM05D005346 ORTHO05D007051 6.3e-33 145.2 135 61.5
Gorai.002G177500 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.3e-30 137.5 93 73.1
VMungo1215G3342 Vigna mungo HOM05D005346 ORTHO05D007051 6.7e-27 125.2 97 80.4
Migut.E01266 Erythranthe guttata HOM05D005346 ORTHO05D007051 4.4e-26 122.5 95 68.4
Gohir.D13G182400 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.1e-24 117.9 73 79.5
MCO12G072 Micromonas commoda HOM05D005346 ORTHO05D007051 1.8e-24 117.1 99 59.6
PRCOL_00004903 Prasinoderma coloniale HOM05D005346 ORTHO05D007051 1.8e-24 117.1 122 50.0
SMO164G0226 Selaginella moellendorffii HOM05D005346 ORTHO05D007051 3.1e-24 116.3 153 47.7
Cre02.g101800 Chlamydomonas reinhardtii HOM05D005346 ORTHO05D007051 7.0e-24 115.2 164 45.1
AagrBONN_evm.TU.Sc2ySwM_369.472 Anthoceros agrestis HOM05D005346 ORTHO05D007051 2.7e-23 113.2 79 67.1
Actinidia14465 Actinidia chinensis HOM05D005346 ORTHO05D007051 1.1e-21 107.8 219 39.7
Nitab4.5_0001816g0160 Nicotiana tabacum HOM05D005346 ORTHO05D020323 1.1e-21 107.8 188 41.0
SMO353G0412 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 1.9e-21 107.1 189 40.2
Peaxi162Scf00102g01240 Petunia axillaris HOM05D005346 ORTHO05D020323 9.4e-21 104.8 188 38.3
Nitab4.5_0001265g0030 Nicotiana tabacum HOM05D005346 ORTHO05D020323 1.4e-19 100.9 187 36.4
Sopen08g003450 Solanum pennellii HOM05D005346 ORTHO05D020323 4.0e-19 99.4 258 34.5
Solyc08g007490.3 Solanum lycopersicum HOM05D005346 ORTHO05D020323 8.8e-19 98.2 258 34.1
SEGI_00698 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 6.3e-17 92.0 65 73.8
Haze_26312 Corylus avellana HOM05D005346 ORTHO05D007051 3.8e-14 82.8 134 36.6
SMO364G0639 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 7.2e-13 78.6 148 39.2
CAN.G1394.34 Capsicum annuum HOM05D005346 ORTHO05D020323 7.5e-10 68.6 115 40.0
TPR.G941 Trifolium pratense HOM05D005346 ORTHO05D007051 8.3e-09 65.1 53 84.9
Lj6g0026400 Lotus japonicus HOM05D005346 ORTHO05D007051 1.8e-08 63.9 51 64.7
Nitab4.5_0003534g0100 Nicotiana tabacum HOM05D005346 ORTHO05D007051 1.3e-06 57.8 109 42.2


User provided reference genes

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