Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G2488 Cannabis sativa HOM05D005100 ORTHO05D005607 8.5e-69 263.5 126 100.0
Solyc08g078860.4 Solanum lycopersicum HOM05D005100 ORTHO05D005607 1.0e-61 240.0 126 88.1
Sopen08g027330 Solanum pennellii HOM05D005100 ORTHO05D005607 1.0e-61 240.0 126 88.1
Lj2C215G2 Lonicera japonica HOM05D005100 ORTHO05D005607 1.3e-61 239.6 126 91.3
Atru.chr9.1362 Acer truncatum HOM05D005100 ORTHO05D005607 5.0e-61 237.7 126 89.7
QL12p012809 Quercus lobata HOM05D005100 ORTHO05D005607 1.1e-60 236.5 125 88.8
MD17G1263200 Malus domestica HOM05D005100 ORTHO05D005607 1.5e-60 236.1 126 88.9
Prupe.3G111600 Prunus persica HOM05D005100 ORTHO05D005607 3.3e-60 235.0 126 88.1
Rhsim07G0107000 Rhododendron simsii HOM05D005100 ORTHO05D005607 5.6e-60 234.2 125 88.0
Rhsim07G0106400 Rhododendron simsii HOM05D005100 ORTHO05D005607 7.2e-60 233.8 126 88.1
CAN.G1218.6 Capsicum annuum HOM05D005100 ORTHO05D005607 9.5e-60 233.4 126 85.7
Migut.A00959 Erythranthe guttata HOM05D005100 ORTHO05D005607 9.5e-60 233.4 126 86.5
Eucgr.E00445 Eucalyptus grandis HOM05D005100 ORTHO05D005607 9.5e-60 233.4 126 87.3
Thecc.03G254700 Theobroma cacao HOM05D005100 ORTHO05D005607 3.6e-59 231.5 126 86.5
Duzib084G0333 Durio zibethinus HOM05D005100 ORTHO05D005607 4.7e-59 231.1 126 86.5
Potri.001G122200 Populus trichocarpa HOM05D005100 ORTHO05D005607 4.7e-59 231.1 126 86.5
Gohir.D12G221900 Gossypium hirsutum HOM05D005100 ORTHO05D005607 6.1e-59 230.7 126 87.3
Lalb_Chr05g0225721 Lupinus albus HOM05D005100 ORTHO05D005607 6.1e-59 230.7 126 86.5
SalBow4G2670 Salvia bowleyana HOM05D005100 ORTHO05D005607 6.1e-59 230.7 126 87.3
Gorai.008G237800 Gossypium raimondii HOM05D005100 ORTHO05D005607 8.0e-59 230.3 126 86.5
TPR.G37704 Trifolium pratense HOM05D003577 ORTHO05D005607 8.0e-59 230.3 126 85.7
FvH4_6g27850 Fragaria vesca HOM05D005100 ORTHO05D005607 1.0e-58 229.9 126 86.5
FAN02G0882 Fragaria x ananassa HOM05D005100 ORTHO05D005607 1.0e-58 229.9 126 86.5
Psat4g070000 Pisum sativum HOM05D005100 ORTHO05D005607 1.4e-58 229.6 126 85.7
Medtr4g101140 Medicago truncatula HOM05D005100 ORTHO05D005607 2.3e-58 228.8 126 84.9
unitig_736.g22564 Utricularia gibba HOM05D005100 ORTHO05D005607 2.3e-58 228.8 126 85.7
Cfa012751 Carpinus fangiana HOM05D005100 ORTHO05D005607 3.0e-58 228.4 126 86.5
Haze_07879 Corylus avellana HOM05D005100 ORTHO05D005607 3.0e-58 228.4 126 86.5
Manes.01G079000 Manihot esculenta HOM05D005100 ORTHO05D005607 3.0e-58 228.4 126 85.7
MSTRG.12083 Avicennia marina HOM05D005100 ORTHO05D005607 4.0e-58 228.0 126 83.3
CSS0026368 Camellia sinensis var. sinensis HOM05D005100 ORTHO05D005607 4.0e-58 228.0 126 87.3
Cpa.g.sc276.5 Carica papaya HOM05D005100 ORTHO05D005607 4.0e-58 228.0 126 84.9
FAN05G1737 Fragaria x ananassa HOM05D005100 ORTHO05D005607 4.0e-58 228.0 125 85.6
Gohir.A12G219800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 4.0e-58 228.0 124 87.1
Lalb_Chr09g0334171 Lupinus albus HOM05D005100 ORTHO05D005607 4.0e-58 228.0 126 85.7
Nn1g01053 Nelumbo nucifera HOM05D005100 ORTHO05D005607 4.0e-58 228.0 126 84.1
RcHm_v2.0_Chr2g0131201 Rosa chinensis HOM05D005100 ORTHO05D005607 4.0e-58 228.0 126 85.7
Gohir.D08G190100 Gossypium hirsutum HOM05D005100 ORTHO05D005607 5.2e-58 227.6 126 86.5
Phvul.001G061600 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 5.2e-58 227.6 126 84.1
FAN14G3965 Fragaria x ananassa HOM05D005100 ORTHO05D005607 6.8e-58 227.3 125 85.6
Nn6g34007 Nelumbo nucifera HOM05D005100 ORTHO05D005607 1.2e-57 226.5 126 84.1
PGR042G3212 Punica granatum HOM05D005100 ORTHO05D005607 2.0e-57 225.7 126 84.9
TAR374G1281 Trochodendron aralioides HOM05D005100 ORTHO05D005607 2.0e-57 225.7 126 85.7
arahy.Tifrunner.gnm1.ann1.1R27RR Arachis hypogaea HOM05D005100 ORTHO05D005607 2.6e-57 225.3 126 84.1
Hma1.2p1_1414F.1_g281930 Hydrangea macrophylla HOM05D005100 ORTHO05D005607 2.6e-57 225.3 127 87.4
Manes.02G037900 Manihot esculenta HOM05D005100 ORTHO05D005607 3.4e-57 224.9 126 83.3
Phvul.003G219300 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 3.4e-57 224.9 126 84.1
CiPaw.11G152200 Carya illinoinensis HOM05D005100 ORTHO05D005607 4.4e-57 224.6 125 84.0
Gohir.A08G171800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 5.7e-57 224.2 126 85.7
Nitab4.5_0007493g0020 Nicotiana tabacum HOM05D005100 ORTHO05D005607 7.5e-57 223.8 126 84.1
SGA_v2.0_scaffold146G36159 Striga asiatica HOM05D005100 ORTHO05D005607 7.5e-57 223.8 126 83.3
THA.LOC104806732 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 7.5e-57 223.8 126 82.5
Glyma.05G058000 Glycine max HOM05D005100 ORTHO05D005607 9.8e-57 223.4 126 83.3
TWI60G0435 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 9.8e-57 223.4 127 85.0
BcaC03g16973 Brassica carinata HOM05D005100 ORTHO05D005607 1.3e-56 223.0 126 83.3
C02p48770 Brassica napus HOM05D000285 ORTHO05D005607 1.3e-56 223.0 126 83.3
BolC2t10971H Brassica oleracea HOM05D005100 ORTHO05D005607 1.3e-56 223.0 126 83.3
MELO3C013951.2 Cucumis melo HOM05D005100 ORTHO05D005607 1.3e-56 223.0 125 82.4
CsaV3_3G002850 Cucumis sativus L. HOM05D005100 ORTHO05D005607 1.3e-56 223.0 125 82.4
Glyma.17G140500 Glycine max HOM05D005100 ORTHO05D005607 1.3e-56 223.0 126 83.3
TWI15G0944 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 1.3e-56 223.0 127 84.3
Duzib205G1156 Durio zibethinus HOM05D005100 ORTHO05D005607 1.7e-56 222.6 124 84.7
Ciclev10022867m.g Citrus clementina HOM05D005100 ORTHO05D005607 2.2e-56 222.2 126 84.1
Hund14589 Selenicereus undatus HOM05D005100 ORTHO05D005607 2.2e-56 222.2 125 82.4
Gorai.004G200300 Gossypium raimondii HOM05D005100 ORTHO05D005607 2.9e-56 221.9 127 85.0
Sed0015074 Sechium edule HOM05D005100 ORTHO05D005607 3.7e-56 221.5 125 81.6
CARHR173780 Cardamine hirsuta HOM05D005100 ORTHO05D005607 4.9e-56 221.1 126 81.7
Nitab4.5_0000312g0250 Nicotiana tabacum HOM05D005100 ORTHO05D005607 4.9e-56 221.1 126 83.3
A02p31440 Brassica napus HOM05D000285 ORTHO05D005607 6.4e-56 220.7 126 81.7
C07p31220 Brassica napus HOM05D000285 ORTHO05D005607 6.4e-56 220.7 126 83.3
BraA02t08146Z Brassica rapa HOM05D005100 ORTHO05D005607 6.4e-56 220.7 126 81.7
Peaxi162Scf00002g01216 Petunia axillaris HOM05D005100 ORTHO05D005607 6.4e-56 220.7 126 83.3
Thhalv10001074m.g Eutrema salsugineum HOM05D005100 ORTHO05D005607 8.3e-56 220.3 126 82.5
MD09G1234000 Malus domestica HOM05D005100 ORTHO05D005607 8.3e-56 220.3 126 81.0
arahy.Tifrunner.gnm1.ann1.CZL3S8 Arachis hypogaea HOM05D005100 ORTHO05D005607 1.1e-55 219.9 124 82.3
Ca_21953_v3 Cicer arietinum L. HOM05D005100 ORTHO05D005607 1.1e-55 219.9 126 81.7
Lsat_1_v5_gn_6_2981 Lactuca sativa HOM05D005100 ORTHO05D005607 1.1e-55 219.9 126 84.1
Sp2g12300 Schrenkiella parvula HOM05D005100 ORTHO05D005607 1.1e-55 219.9 126 81.7
A06p44960 Brassica napus HOM05D005100 ORTHO05D005607 1.8e-55 219.2 126 82.5
BolC7t43663H Brassica oleracea HOM05D005100 ORTHO05D005607 1.8e-55 219.2 126 82.5
BcaC04g21614 Brassica carinata HOM05D005100 ORTHO05D005607 2.4e-55 218.8 126 82.5
BcaC06g34239 Brassica carinata HOM05D000285 ORTHO05D005607 2.4e-55 218.8 126 81.7
A09p23130 Brassica napus HOM05D000285 ORTHO05D005607 2.4e-55 218.8 126 82.5
BcaC06g31372 Brassica carinata HOM05D005100 ORTHO05D005607 3.2e-55 218.4 126 81.7
BraA06t27367Z Brassica rapa HOM05D005100 ORTHO05D005607 3.2e-55 218.4 126 81.7
BcaB07g30770 Brassica carinata HOM05D005100 ORTHO05D005607 4.1e-55 218.0 126 81.7
AL8G10400 Arabidopsis lyrata HOM05D005100 ORTHO05D005607 7.0e-55 217.2 126 81.7
Lj4g0006403 Lotus japonicus HOM05D005100 ORTHO05D005607 9.2e-55 216.9 126 80.2
Aa31LG9G5470 Aethionema arabicum HOM05D005100 ORTHO05D005607 1.6e-54 216.1 126 81.0
HanXRQChr13g0396371 Helianthus annuus HOM05D005100 ORTHO05D005607 1.6e-54 216.1 126 82.5
AT5G47570 Arabidopsis thaliana HOM05D005100 ORTHO05D005607 2.0e-54 215.7 126 81.0
ClCG10G002830 Citrullus lanatus HOM05D005100 ORTHO05D005607 2.0e-54 215.7 140 74.3
Carub.0008s0021 Capsella rubella HOM05D005100 ORTHO05D005607 2.7e-54 215.3 126 81.0
Cc08_g12730 Coffea canephora HOM05D005100 ORTHO05D005607 2.7e-54 215.3 126 79.4
Aqoxy7G00738 Aquilegia oxysepala HOM05D005100 ORTHO05D005607 3.5e-54 214.9 126 80.2
CDE11G0582 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 2.9e-53 211.8 126 80.2
BcaC06g31367 Brassica carinata HOM05D005100 ORTHO05D005607 8.6e-53 210.3 127 80.3
ATR0105G007 Amborella trichopoda HOM05D005100 ORTHO05D005607 7.3e-52 207.2 126 76.2
CiPaw.12G108400 Carya illinoinensis HOM05D005100 ORTHO05D005607 1.2e-51 206.5 126 78.6
PSO017G3938 Papaver somniferum HOM05D005100 ORTHO05D005607 1.6e-51 206.1 126 79.4
PSO478G0216 Papaver somniferum HOM05D005100 ORTHO05D005607 2.8e-51 205.3 126 79.4
ECA233G3117 Erigeron canadensis HOM05D005100 ORTHO05D005607 4.7e-51 204.5 114 83.3
PGSC0003DMG400004750 Solanum tuberosum HOM05D005100 ORTHO05D005607 8.9e-50 200.3 107 86.0
vmacro14093 Vaccinium macrocarpon HOM05D005100 ORTHO05D005607 4.4e-49 198.0 107 86.9
Actinidia02116 Actinidia chinensis HOM05D005100 ORTHO05D005607 4.9e-48 194.5 124 75.0
Sabra01G0094100 Salix brachista HOM05D005100 ORTHO05D005607 2.4e-47 192.2 107 85.0
Zm00001eb391700 Zea mays HOM05D005100 ORTHO05D005607 2.4e-47 192.2 126 72.2
THA.LOC104798464 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 3.2e-47 191.8 112 79.5
Haze_07877 Corylus avellana HOM05D005100 ORTHO05D005607 4.1e-47 191.4 107 85.0
Os10g0551600 Oryza sativa ssp. japonica HOM05D005100 ORTHO05D005607 4.1e-47 191.4 126 69.0
Dinv21616 Davidia involucrata HOM05D005100 ORTHO05D005607 5.4e-47 191.0 107 85.0
Oeu011653.1 Olea europaea HOM05D005100 ORTHO05D005607 5.4e-47 191.0 107 84.1
COL.COLO4_37195 Corchorus olitorius HOM05D005100 ORTHO05D005607 7.0e-47 190.7 107 84.1
Dinv39123 Davidia involucrata HOM05D005100 ORTHO05D005607 1.2e-46 189.9 94 90.4
Oeu006279.1 Olea europaea HOM05D005100 ORTHO05D005607 6.0e-46 187.6 107 81.3
PGSC0003DMG400004799 Solanum tuberosum HOM05D005100 ORTHO05D005607 6.0e-46 187.6 139 67.6
HPP92_012813 Vanilla planifolia HOM05D005100 ORTHO05D005607 6.0e-46 187.6 126 71.4
Actinidia05198 Actinidia chinensis HOM05D005100 ORTHO05D005607 1.7e-45 186.0 93 89.2
DCAR_027789 Daucus carota HOM05D005100 ORTHO05D005607 5.0e-45 184.5 112 79.5
MBI11_g37068_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 1.1e-44 183.3 107 80.4
Zm00001eb023020 Zea mays HOM05D005100 ORTHO05D005607 1.9e-44 182.6 126 67.5
Sed0017508 Sechium edule HOM05D005100 ORTHO05D005607 2.5e-44 182.2 107 78.5
BolC9t55849H Brassica oleracea HOM05D000285 ORTHO05D005607 9.5e-44 180.3 112 77.7
MBI02_g00644_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 9.5e-44 180.3 107 78.5
Ah.12g056670 Amaranthus hybridus HOM05D005100 ORTHO05D005607 1.6e-43 179.5 94 86.2
AUR62007498 Chenopodium quinoa HOM05D005100 ORTHO05D005607 1.6e-43 179.5 104 81.7
BraA09t37916Z Brassica rapa HOM05D000285 ORTHO05D005607 2.8e-43 178.7 107 80.4
C09p29860 Brassica napus HOM05D000285 ORTHO05D005607 1.1e-42 176.8 112 75.9
SEGI_05699 Sequoiadendron giganteum HOM05D005100 ORTHO05D005607 3.9e-37 158.3 125 62.4
COL.COLO4_37193 Corchorus olitorius HOM05D005100 ORTHO05D005607 1.2e-35 153.3 126 63.5
CDE02G1099 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 2.1e-35 152.5 141 57.4
EL10Ac5g13047 Beta vulgaris HOM05D005100 ORTHO05D005607 4.7e-35 151.4 126 62.7
MBI02_g36452_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 1.1e-34 150.2 124 62.1
GSVIVG01001301001 Vitis vinifera HOM05D005100 ORTHO05D005607 4.4e-33 144.8 75 85.3
Pp3c20_8820 Physcomitrium patens HOM05D005100 ORTHO05D005607 4.9e-32 141.4 105 60.0
RcHm_v2.0_Chr1g0345201 Rosa chinensis HOM05D005100 ORTHO05D005607 3.0e-29 132.1 79 75.9
Mapoly0086s0019 Marchantia polymorpha HOM05D005100 ORTHO05D005607 8.6e-29 130.6 104 58.7
SalBow8G2639 Salvia bowleyana HOM05D005100 ORTHO05D005607 1.6e-27 126.3 75 81.3
Hund11615 Selenicereus undatus HOM05D005100 ORTHO05D005607 1.8e-26 122.9 126 53.2
RcHm_v2.0_Chr2g0112371 Rosa chinensis HOM05D005100 ORTHO05D005607 2.4e-26 122.5 64 85.9
Sc22g0000770 Simmondsia chinensis HOM05D005100 ORTHO05D005607 2.4e-26 122.5 79 72.2
FAN05G0157 Fragaria x ananassa HOM05D005100 ORTHO05D005607 5.2e-26 121.3 87 67.8
RcHm_v2.0_Chr2g0109601 Rosa chinensis HOM05D005100 ORTHO05D005607 5.2e-26 121.3 64 84.4
FAN09G2413 Fragaria x ananassa HOM05D005100 ORTHO05D005607 9.9e-25 117.1 87 64.4
FvH4_6g09560 Fragaria vesca HOM05D005100 ORTHO05D005607 1.3e-24 116.7 89 68.5
AagrBONN_evm.TU.Sc2ySwM_117.677 Anthoceros agrestis HOM05D005100 ORTHO05D005607 1.4e-23 113.2 91 52.7
RcHm_v2.0_Chr6g0244011 Rosa chinensis HOM05D005100 ORTHO05D005607 1.9e-20 102.8 75 64.0
TWI81G0033 Tripterygium wilfordii HOM05D000001 ORTHO05D011365 4.3e-20 101.7 81 61.7
RcHm_v2.0_Chr1g0326801 Rosa chinensis HOM05D005100 ORTHO05D005607 3.6e-19 98.6 97 53.6
RcHm_v2.0_Chr5g0051271 Rosa chinensis HOM05D005100 ORTHO05D005607 1.1e-15 87.0 72 62.5
CBR_g50946 Chara braunii HOM05D005100 ORTHO05D005607 2.4e-15 85.9 78 52.6
RcHm_v2.0_Chr4g0420451 Rosa chinensis HOM05D005100 ORTHO05D005607 3.2e-15 85.5 75 60.0
MCO13G524 Micromonas commoda HOM05D005100 ORTHO05D005607 7.1e-15 84.3 103 44.7
Nitab4.5_0003531g0010 Nicotiana tabacum HOM05D005100 ORTHO05D005607 1.5e-12 76.6 43 81.4
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 2.9e-08 62.4 45 66.7
QL12p012843 Quercus lobata HOM05D005100 ORTHO05D005607 4.2e-07 58.5 42 71.4


User provided reference genes

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