Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G2474 Cannabis sativa HOM05D005946 ORTHO05D007340 3.3e-33 144.4 71 100.0
Lsat_1_v5_gn_6_8840 Lactuca sativa HOM05D005946 ORTHO05D007340 7.3e-33 143.3 71 98.6
ECA246G0405 Erigeron canadensis HOM05D005946 ORTHO05D007340 2.1e-32 141.7 71 97.2
HanXRQChr17g0534681 Helianthus annuus HOM05D005946 ORTHO05D007340 2.1e-32 141.7 71 97.2
HanXRQChr07g0190741 Helianthus annuus HOM05D005946 ORTHO05D007340 2.8e-32 141.4 71 97.2
Lsat_1_v5_gn_3_12801 Lactuca sativa HOM05D005946 ORTHO05D007340 4.7e-32 140.6 71 97.2
CARHR192660 Cardamine hirsuta HOM05D005946 ORTHO05D007340 6.1e-32 140.2 71 95.8
Thhalv10015210m.g Eutrema salsugineum HOM05D005946 ORTHO05D007340 6.1e-32 140.2 71 95.8
Sp6g24240 Schrenkiella parvula HOM05D005946 ORTHO05D007340 6.1e-32 140.2 71 95.8
THA.LOC109116592 Tarenaya hassleriana HOM05D005946 ORTHO05D007340 6.1e-32 140.2 71 95.8
A03p09890 Brassica napus HOM05D005946 ORTHO05D007340 1.4e-31 139.0 71 94.4
AL6G31720 Arabidopsis lyrata HOM05D005946 ORTHO05D007340 1.8e-31 138.7 71 94.4
AT5G20165 Arabidopsis thaliana HOM05D005946 ORTHO05D007340 1.8e-31 138.7 71 94.4
Carub.0006s1856 Capsella rubella HOM05D005946 ORTHO05D007340 1.8e-31 138.7 71 94.4
Eucgr.B03471 Eucalyptus grandis HOM05D005946 ORTHO05D007340 1.8e-31 138.7 71 93.0
Rhsim07G0080600 Rhododendron simsii HOM05D005946 ORTHO05D007340 1.8e-31 138.7 71 93.0
Duzib251G0400 Durio zibethinus HOM05D005946 ORTHO05D007340 2.3e-31 138.3 71 94.4
Gohir.A03G127300 Gossypium hirsutum HOM05D005946 ORTHO05D007340 2.3e-31 138.3 71 94.4
Gorai.005G169000 Gossypium raimondii HOM05D005946 ORTHO05D007340 2.3e-31 138.3 71 94.4
Thecc.02G276900 Theobroma cacao HOM05D005946 ORTHO05D007340 2.3e-31 138.3 71 94.4
Prupe.5G124600 Prunus persica HOM05D005946 ORTHO05D007340 4.0e-31 137.5 71 91.5
A10p19740 Brassica napus HOM05D005946 ORTHO05D007340 5.2e-31 137.1 70 94.3
C09p56030 Brassica napus HOM05D005946 ORTHO05D007340 5.2e-31 137.1 70 94.3
BolC3t13619H Brassica oleracea HOM05D005946 ORTHO05D007340 5.2e-31 137.1 70 94.3
BolC9t58470H Brassica oleracea HOM05D005946 ORTHO05D007340 5.2e-31 137.1 70 94.3
BraA03t10302Z Brassica rapa HOM05D005946 ORTHO05D007340 5.2e-31 137.1 70 94.3
BraA10t44050Z Brassica rapa HOM05D005946 ORTHO05D007340 5.2e-31 137.1 70 94.3
Duzib248G1204 Durio zibethinus HOM05D005946 ORTHO05D007340 5.2e-31 137.1 71 93.0
Gorai.002G192200 Gossypium raimondii HOM05D005946 ORTHO05D007340 5.2e-31 137.1 71 94.4
Lj4g0023384 Lotus japonicus HOM05D005946 ORTHO05D007340 5.2e-31 137.1 71 93.0
Aa31LG10G8610 Aethionema arabicum HOM05D005946 ORTHO05D007340 6.8e-31 136.7 71 93.0
EL10Ac6g13474 Beta vulgaris HOM05D005946 ORTHO05D007340 6.8e-31 136.7 71 91.5
MD14G1133000 Malus domestica HOM05D005946 ORTHO05D007340 6.8e-31 136.7 71 91.5
Nn3g18946 Nelumbo nucifera HOM05D005946 ORTHO05D007340 6.8e-31 136.7 69 94.2
TAR374G1140 Trochodendron aralioides HOM05D005946 ORTHO05D007340 6.8e-31 136.7 71 93.0
Manes.12G013300 Manihot esculenta HOM05D005946 ORTHO05D007340 8.9e-31 136.3 71 93.0
Manes.13G017850 Manihot esculenta HOM05D005946 ORTHO05D007340 8.9e-31 136.3 71 93.0
Rhsim12G0028200 Rhododendron simsii HOM05D005946 ORTHO05D007340 8.9e-31 136.3 71 91.5
TWI14G1045 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 8.9e-31 136.3 71 93.0
Sed0027475 Sechium edule HOM05D005946 ORTHO05D007340 1.2e-30 136.0 71 91.5
Ciclev10033263m.g Citrus clementina HOM05D005946 ORTHO05D007340 1.5e-30 135.6 71 91.5
Dinv14819 Davidia involucrata HOM05D005946 ORTHO05D007340 1.5e-30 135.6 71 91.5
CDE10G0705 Ceratophyllum demersum HOM05D005946 ORTHO05D007340 2.0e-30 135.2 71 88.7
Gohir.D02G150700 Gossypium hirsutum HOM05D005946 ORTHO05D007340 2.0e-30 135.2 71 93.0
MBI07_g24770_MAGBIO Magnolia biondii HOM05D005946 ORTHO05D007340 2.0e-30 135.2 71 90.1
TWI36G1309 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 2.0e-30 135.2 71 91.5
Actinidia27305 Actinidia chinensis HOM05D005946 ORTHO05D007340 2.6e-30 134.8 71 90.1
PSO063G0123 Papaver somniferum HOM05D005946 ORTHO05D007340 3.4e-30 134.4 71 90.1
PSO170G6765 Papaver somniferum HOM05D005946 ORTHO05D007340 3.4e-30 134.4 71 90.1
Potri.008G176801 Populus trichocarpa HOM05D005946 ORTHO05D007340 3.4e-30 134.4 71 91.5
Potri.010G058300 Populus trichocarpa HOM05D005946 ORTHO05D007340 3.4e-30 134.4 71 91.5
vmacro01071 Vaccinium macrocarpon HOM05D005946 ORTHO05D007340 3.4e-30 134.4 71 90.1
TWI36G1530 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 4.4e-30 134.0 71 90.1
Cc00_g13530 Coffea canephora HOM05D005946 ORTHO05D007340 5.8e-30 133.7 71 90.1
FvH4_5g11580 Fragaria vesca HOM05D005946 ORTHO05D007340 5.8e-30 133.7 71 91.5
Medtr3g085600 Medicago truncatula HOM05D005946 ORTHO05D007340 5.8e-30 133.7 71 90.1
Phvul.001G260400 Phaseolus vulgaris HOM05D005946 ORTHO05D007340 5.8e-30 133.7 71 90.1
PGR004G0564 Punica granatum HOM05D005946 ORTHO05D007340 5.8e-30 133.7 71 88.7
CiPaw.06G100600 Carya illinoinensis HOM05D005946 ORTHO05D007340 7.5e-30 133.3 71 90.1
CSS0024427 Camellia sinensis var. sinensis HOM05D005946 ORTHO05D007340 9.8e-30 132.9 71 88.7
MD06G1111800 Malus domestica HOM05D005946 ORTHO05D007340 9.8e-30 132.9 71 88.7
TPR.G21803 Trifolium pratense HOM05D005946 ORTHO05D007340 1.3e-29 132.5 71 88.7
Glyma.11G249100 Glycine max HOM05D005946 ORTHO05D007340 1.7e-29 132.1 71 88.7
Solyc06g068780.3 Solanum lycopersicum HOM05D005946 ORTHO05D007340 1.7e-29 132.1 71 88.7
Sopen06g026060 Solanum pennellii HOM05D005946 ORTHO05D007340 1.7e-29 132.1 71 88.7
PGSC0003DMG400025576 Solanum tuberosum HOM05D005946 ORTHO05D007340 1.7e-29 132.1 71 88.7
CiPaw.05G112200 Carya illinoinensis HOM05D005946 ORTHO05D007340 2.2e-29 131.7 71 90.1
Lalb_Chr05g0223941 Lupinus albus HOM05D005946 ORTHO05D007340 3.7e-29 131.0 71 87.3
Solyc03g118140.3 Solanum lycopersicum HOM05D005946 ORTHO05D007340 3.7e-29 131.0 71 87.3
Sopen03g037060 Solanum pennellii HOM05D005946 ORTHO05D007340 3.7e-29 131.0 71 87.3
PGR102G2803 Punica granatum HOM05D005946 ORTHO05D007340 4.9e-29 130.6 71 85.9
arahy.Tifrunner.gnm1.ann1.55451G Arachis hypogaea HOM05D005946 ORTHO05D007340 6.4e-29 130.2 70 87.1
Migut.N01429 Erythranthe guttata HOM05D005946 ORTHO05D007340 6.4e-29 130.2 71 87.3
Lalb_Chr09g0332191 Lupinus albus HOM05D005946 ORTHO05D007340 6.4e-29 130.2 71 88.7
Nitab4.5_0001841g0040 Nicotiana tabacum HOM05D005946 ORTHO05D007340 6.4e-29 130.2 70 88.6
Psat7g023880 Pisum sativum HOM05D005946 ORTHO05D007340 1.1e-28 129.4 71 90.1
CAN.G843.5 Capsicum annuum HOM05D005946 ORTHO05D007340 1.4e-28 129.0 70 87.1
Nitab4.5_0008858g0060 Nicotiana tabacum HOM05D005946 ORTHO05D007340 1.9e-28 128.6 70 87.1
Os05g0251500 Oryza sativa ssp. japonica HOM05D005946 ORTHO05D007340 1.9e-28 128.6 71 84.5
SalBow5G0243 Salvia bowleyana HOM05D005946 ORTHO05D007340 1.9e-28 128.6 71 85.9
SalBow5G1014 Salvia bowleyana HOM05D005946 ORTHO05D007340 1.9e-28 128.6 71 85.9
THA.LOC104799646 Tarenaya hassleriana HOM05D005946 ORTHO05D007340 1.9e-28 128.6 90 75.6
CAN.G1089.18 Capsicum annuum HOM05D005946 ORTHO05D007340 2.4e-28 128.3 70 87.1
SalBow3G2240 Salvia bowleyana HOM05D005946 ORTHO05D007340 3.2e-28 127.9 71 87.3
Migut.B01726 Erythranthe guttata HOM05D005946 ORTHO05D007340 5.4e-28 127.1 71 84.5
MSTRG.28215 Avicennia marina HOM05D005946 ORTHO05D007340 9.2e-28 126.3 71 84.5
Os02g0299600 Oryza sativa ssp. japonica HOM05D005946 ORTHO05D007340 9.2e-28 126.3 71 83.1
SEGI_28367 Sequoiadendron giganteum HOM05D005946 ORTHO05D007340 2.0e-27 125.2 71 81.7
CDE10G0420 Ceratophyllum demersum HOM05D005946 ORTHO05D007340 2.7e-27 124.8 63 90.5
unitig_747.g21988 Utricularia gibba HOM05D005946 ORTHO05D007340 3.9e-26 120.9 71 81.7
Zm00001eb237180 Zea mays HOM05D005946 ORTHO05D007340 5.0e-26 120.6 70 78.6
vmacro14062 Vaccinium macrocarpon HOM05D005946 ORTHO05D007340 6.6e-26 120.2 62 90.3
Mapoly0008s0042 Marchantia polymorpha HOM05D005946 ORTHO05D007340 1.1e-25 119.4 71 80.3
Pp3s128_20 Physcomitrium patens HOM05D005946 ORTHO05D007340 9.5e-25 116.3 71 77.5
RcHm_v2.0_Chr4g0430651 Rosa chinensis HOM05D005946 ORTHO05D007340 2.1e-24 115.2 69 76.8
arahy.Tifrunner.gnm1.ann1.XCNA8V Arachis hypogaea HOM05D005946 ORTHO05D007340 2.8e-24 114.8 99 61.6
AagrBONN_evm.TU.Sc2ySwM_228.3656 Anthoceros agrestis HOM05D005946 ORTHO05D007340 1.1e-23 112.8 71 73.2
FvH4_4g23990 Fragaria vesca HOM05D005946 ORTHO05D007340 2.0e-22 108.6 69 73.9
unitig_0.g1509 Utricularia gibba HOM05D005946 ORTHO05D007340 4.4e-22 107.5 71 74.6
C03p11470 Brassica napus HOM05D005946 ORTHO05D007340 3.2e-20 101.3 56 87.5
Cre07.g325735 Chlamydomonas reinhardtii HOM05D005946 ORTHO05D007340 4.1e-20 100.9 71 64.8
Actinidia22739 Actinidia chinensis HOM05D005946 ORTHO05D007340 6.0e-19 97.1 58 81.0
Sabra08G0134600 Salix brachista HOM05D005946 ORTHO05D007340 6.0e-19 97.1 145 44.8
Nn1g00299 Nelumbo nucifera HOM05D005946 ORTHO05D007340 1.1e-17 92.8 44 93.2
Peaxi162Scf00314g00635 Petunia axillaris HOM05D005946 ORTHO05D007340 1.9e-17 92.0 50 86.0
Glyma.18G008200 Glycine max HOM05D005946 ORTHO05D007340 3.3e-17 91.3 49 87.8
CsaV3_6G032330 Cucumis sativus L. HOM05D003413 ORTHO05D004197 2.8e-16 88.2 53 77.4
SGA_v2.0_scaffold11G05656 Striga asiatica HOM05D000612 ORTHO05D000461 6.2e-16 87.0 49 83.7
MELO3C030289.2 Cucumis melo HOM05D005946 ORTHO05D007340 1.1e-15 86.3 48 83.3
TPR.G37229 Trifolium pratense HOM05D005946 ORTHO05D007340 8.9e-15 83.2 51 76.5
Sed0005468 Sechium edule HOM05D005946 ORTHO05D007340 2.0e-14 82.0 69 63.8
HPP92_000512 Vanilla planifolia HOM05D005946 ORTHO05D007340 2.0e-14 82.0 38 92.1
Dinv16088 Davidia involucrata HOM05D005946 ORTHO05D007340 3.4e-14 81.3 48 79.2
FAN07G2898 Fragaria x ananassa HOM05D005946 ORTHO05D007340 3.7e-13 77.8 62 61.3
RcHm_v2.0_Chr5g0020411 Rosa chinensis HOM05D005946 ORTHO05D007340 3.7e-13 77.8 69 55.1
ATR0955G005 Amborella trichopoda HOM05D005946 ORTHO05D007340 6.4e-13 77.0 47 74.5
MCO08G327 Micromonas commoda HOM05D005946 ORTHO05D007340 6.4e-13 77.0 62 58.1
PRCOL_00003875 Prasinoderma coloniale HOM05D005946 ORTHO05D007340 1.4e-12 75.9 71 50.7
FAN17G0158 Fragaria x ananassa HOM05D005946 ORTHO05D007340 5.4e-12 73.9 53 66.0
FvH4_3g12470 Fragaria vesca HOM05D005946 ORTHO05D045642 1.2e-11 72.8 65 55.4
FAN12G4044 Fragaria x ananassa HOM05D005946 ORTHO05D007340 1.2e-11 72.8 48 70.8
RcHm_v2.0_Chr7g0186171 Rosa chinensis HOM05D005946 ORTHO05D007340 3.5e-11 71.2 37 94.6
Nitab4.5_0005774g0040 Nicotiana tabacum HOM05D005946 ORTHO05D007340 4.6e-11 70.9 34 94.1
FAN04G2943 Fragaria x ananassa HOM05D005946 ORTHO05D007340 1.0e-10 69.7 36 94.4
FAN08G3074 Fragaria x ananassa HOM05D005946 ORTHO05D007340 1.0e-10 69.7 36 94.4
FAN18G3129 Fragaria x ananassa HOM05D005946 ORTHO05D007340 1.0e-10 69.7 36 94.4
Psat5g094720 Pisum sativum HOM05D005946 ORTHO05D007340 5.1e-10 67.4 47 70.2
SHI17703 Sapria himalayana HOM05D005946 ORTHO05D007340 5.1e-10 67.4 38 84.2
Sabra10G0047000 Salix brachista HOM05D005946 ORTHO05D007340 1.5e-09 65.9 43 76.7
arahy.Tifrunner.gnm1.ann1.K0QS2G Arachis hypogaea HOM05D005946 ORTHO05D007340 1.9e-09 65.5 43 72.1
Peaxi162Scf00207g00238 Petunia axillaris HOM05D005946 ORTHO05D007340 2.5e-09 65.1 37 83.8
ClCG08G010140 Citrullus lanatus HOM05D005946 ORTHO05D007340 7.3e-09 63.5 37 78.4
BcaC03g15832 Brassica carinata HOM05D005104 ORTHO05D007340 4.4e-06 54.3 29 89.7


User provided reference genes

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