Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 7.4e-297 1023.1 508 100.0
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 1.4e-218 763.1 513 74.1
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 4.0e-218 761.5 511 73.6
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.7e-216 756.1 511 73.2
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.1e-215 753.4 520 72.9
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 1.4e-215 753.1 510 72.9
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 4.2e-215 751.5 513 73.1
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 4.2e-215 751.5 513 73.7
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 5.4e-215 751.1 511 73.6
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 1.8e-210 736.1 510 71.6
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 6.9e-210 734.2 510 72.4
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 2.6e-209 732.3 512 72.9
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 5.8e-209 731.1 512 71.1
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 5.8e-209 731.1 514 71.8
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 5.8e-209 731.1 510 72.2
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 1.7e-208 729.6 512 72.3
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 1.7e-208 729.6 514 72.4
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.4e-207 726.5 511 71.0
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.4e-207 726.5 511 71.0
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 1.4e-207 726.5 515 71.7
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 2.7e-206 722.2 511 71.8
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 1.3e-205 719.9 535 69.7
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 8.7e-205 717.2 510 71.2
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 4.0e-202 708.4 515 68.9
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 1.2e-201 706.8 511 68.3
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 2.9e-200 702.2 515 69.5
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 6.5e-200 701.0 510 69.2
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 6.5e-200 701.0 508 68.7
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 5.5e-199 698.0 511 66.5
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 9.3e-199 697.2 511 66.9
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 1.6e-198 696.4 513 67.8
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 1.6e-198 696.4 510 67.8
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 7.9e-198 694.1 512 68.2
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 7.9e-198 694.1 511 69.3
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 7.9e-198 694.1 510 68.6
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 1.0e-197 693.7 510 68.4
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 1.3e-197 693.3 512 68.2
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 1.8e-197 693.0 509 68.6
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 5.1e-197 691.4 514 67.7
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 6.7e-197 691.0 510 68.0
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 1.1e-196 690.3 512 67.8
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 1.9e-196 689.5 510 67.6
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 2.5e-196 689.1 510 68.0
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 4.3e-196 688.3 572 62.8
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 4.3e-196 688.3 509 67.2
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 7.4e-196 687.6 509 66.4
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 1.3e-195 686.8 515 67.2
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 8.2e-195 684.1 511 67.1
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 5.3e-194 681.4 511 66.7
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 1.5e-193 679.9 595 59.8
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 7.7e-193 677.6 510 66.1
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 1.3e-192 676.8 509 67.6
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 1.7e-192 676.4 510 65.9
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 2.9e-192 675.6 506 66.4
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 6.5e-192 674.5 511 65.2
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 8.5e-192 674.1 508 65.2
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 4.2e-191 671.8 525 66.5
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 6.1e-190 667.9 511 65.8
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 2.3e-189 666.0 508 64.4
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 2.5e-188 662.5 505 65.5
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 1.3e-187 660.2 460 70.4
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 2.8e-187 659.1 503 65.6
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 6.3e-187 657.9 510 65.7
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 1.8e-186 656.4 513 65.7
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 9.1e-186 654.1 519 63.6
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 5.9e-185 651.4 508 65.0
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 1.3e-184 650.2 510 64.3
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 1.7e-184 649.8 500 67.2
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 3.8e-184 648.7 510 63.9
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 1.1e-183 647.1 514 63.6
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 1.4e-183 646.7 479 67.0
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 1.9e-183 646.4 510 64.1
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 3.2e-183 645.6 511 64.2
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 4.2e-183 645.2 509 63.7
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 9.4e-183 644.0 509 64.2
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 1.2e-182 643.7 515 64.1
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 1.2e-182 643.7 463 68.5
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 2.7e-182 642.5 510 63.9
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 4.7e-182 641.7 510 63.9
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 6.1e-182 641.3 509 63.7
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 1.0e-181 640.6 510 64.3
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 1.0e-181 640.6 511 64.4
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 8.8e-181 637.5 513 63.0
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 2.0e-180 636.3 547 61.2
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 5.7e-180 634.8 485 64.7
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 1.3e-179 633.6 507 65.3
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 1.3e-179 633.6 508 62.6
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 2.2e-179 632.9 510 65.3
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 4.8e-179 631.7 433 71.1
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 1.4e-178 630.2 508 62.0
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 3.8e-176 622.1 435 69.9
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 5.0e-176 621.7 550 59.1
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 2.7e-174 615.9 440 69.1
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 4.7e-174 615.1 510 63.1
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 6.1e-174 614.8 578 58.1
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 1.4e-173 613.6 503 62.6
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 5.0e-168 595.1 429 69.9
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 5.0e-168 595.1 492 62.6
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 1.9e-167 593.2 477 61.6
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 2.3e-165 586.3 514 59.7
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 2.8e-163 579.3 554 57.6
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.9e-159 566.6 435 65.3
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 1.4e-157 560.5 462 60.4
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 3.1e-154 549.3 356 76.4
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 2.1e-150 536.6 380 69.5
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 1.0e-144 517.7 508 54.7
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 1.3e-144 517.3 515 53.0
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 3.1e-141 506.1 372 68.3
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 2.9e-139 499.6 416 62.7
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.4e-133 480.7 449 56.3
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 3.0e-128 463.0 385 61.3
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 4.1e-122 442.6 533 45.8
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 2.3e-120 436.8 370 60.3
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 3.2e-114 416.4 446 49.6
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 2.1e-113 413.7 477 49.5
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.3e-107 394.4 500 45.4
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 1.1e-106 391.3 392 56.1
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 7.6e-100 368.6 276 64.1
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 2.5e-95 353.6 327 58.7
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 5.1e-80 302.8 392 47.4
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 3.6e-73 280.0 455 37.6
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 3.9e-72 276.6 477 39.4
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 3.1e-69 266.9 464 36.4
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 4.7e-65 253.1 240 56.7
BolC5t35086H Brassica oleracea HOM05D005505 ORTHO05D006974 1.1e-58 231.9 211 57.8
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 1.4e-56 224.9 475 32.8
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 6.7e-56 222.6 369 35.8
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 3.3e-55 220.3 157 71.3
CBR_g34015 Chara braunii HOM05D005505 ORTHO05D006974 9.8e-39 165.6 249 39.0
Haze_11577 Corylus avellana HOM05D005505 ORTHO05D006974 1.1e-37 162.2 132 65.2
SpUn0242_NC2199 Schrenkiella parvula HOM05D005505 ORTHO05D006974 5.9e-36 156.4 102 74.5
CBR_g34017 Chara braunii HOM05D005505 ORTHO05D006974 1.2e-33 148.7 211 37.9
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 8.0e-33 146.0 108 68.5
Ca_29365_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 3.3e-26 124.0 347 27.4
Actinidia34626 Actinidia chinensis HOM05D005505 ORTHO05D006974 1.2e-23 115.5 106 55.7
Lj3A579T17 Lonicera japonica HOM05D005505 ORTHO05D006974 3.4e-15 87.4 62 64.5
CDE09G0201 Ceratophyllum demersum HOM05D000090 ORTHO05D001584 4.1e-13 80.5 49 81.6
AL3G39220 Arabidopsis lyrata HOM05D005505 ORTHO05D000101 3.5e-12 77.4 44 72.7
Lj3A565T20 Lonicera japonica HOM05D005505 ORTHO05D006974 3.3e-10 70.9 66 60.6
Cfa023657 Carpinus fangiana HOM05D002878 ORTHO05D014171 2.9e-06 57.8 225 29.3


User provided reference genes

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