Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G2314 Cannabis sativa HOM05D006675 ORTHO05D008302 3.5e-100 368.2 180 100.0
Duzib205G0370 Durio zibethinus HOM05D006675 ORTHO05D008302 1.6e-92 342.8 180 89.4
CiPaw.12G069400 Carya illinoinensis HOM05D006675 ORTHO05D008302 7.9e-92 340.5 180 90.0
COL.COLO4_16920 Corchorus olitorius HOM05D006675 ORTHO05D008302 1.0e-91 340.1 180 89.4
MELO3C013816.2 Cucumis melo HOM05D006675 ORTHO05D008302 2.3e-91 339.0 180 88.9
CsaV3_3G001280 Cucumis sativus L. HOM05D006675 ORTHO05D008302 3.9e-91 338.2 180 88.3
QL12p001835 Quercus lobata HOM05D006675 ORTHO05D008302 6.7e-91 337.4 179 88.3
Thecc.03G311400 Theobroma cacao HOM05D006675 ORTHO05D008302 8.7e-91 337.0 180 87.8
Sed0011153 Sechium edule HOM05D006675 ORTHO05D008302 1.5e-90 336.3 180 88.3
RcHm_v2.0_Chr7g0212211 Rosa chinensis HOM05D006675 ORTHO05D008302 3.3e-90 335.1 180 88.9
Gohir.D03G176700 Gossypium hirsutum HOM05D006675 ORTHO05D008302 7.4e-90 334.0 180 88.3
Duzib068G1343 Durio zibethinus HOM05D006675 ORTHO05D008302 1.3e-89 333.2 180 87.2
Haze_12062 Corylus avellana HOM05D006675 ORTHO05D008302 1.8e-88 329.3 180 86.1
Cfa009033 Carpinus fangiana HOM05D006675 ORTHO05D008302 4.0e-88 328.2 180 85.0
Potri.001G135700 Populus trichocarpa HOM05D006675 ORTHO05D008302 5.3e-88 327.8 180 85.6
TWI60G1033 Tripterygium wilfordii HOM05D006675 ORTHO05D008302 5.3e-88 327.8 180 85.0
Gohir.A03G000027 Gossypium hirsutum HOM05D006675 ORTHO05D008302 6.9e-88 327.4 180 86.7
FvH4_5g23270 Fragaria vesca HOM05D006675 ORTHO05D008302 9.0e-88 327.0 180 86.7
FAN18G2874 Fragaria x ananassa HOM05D006675 ORTHO05D008302 9.0e-88 327.0 180 86.7
PGSC0003DMG400003501 Solanum tuberosum HOM05D006675 ORTHO05D008302 1.5e-87 326.2 180 83.3
Atru.chr3.2397 Acer truncatum HOM05D006675 ORTHO05D008302 2.0e-87 325.9 180 85.0
PSO170G4469 Papaver somniferum HOM05D006675 ORTHO05D008302 2.0e-87 325.9 178 85.4
FAN18G0120 Fragaria x ananassa HOM05D006675 ORTHO05D008302 2.6e-87 325.5 180 86.1
GSVIVG01013027001 Vitis vinifera HOM05D006675 ORTHO05D008302 3.4e-87 325.1 180 83.9
PGR042G1238 Punica granatum HOM05D006675 ORTHO05D008302 4.5e-87 324.7 180 85.6
Solyc08g076130.3 Solanum lycopersicum HOM05D006675 ORTHO05D008302 4.5e-87 324.7 180 82.8
Sopen08g024770 Solanum pennellii HOM05D006675 ORTHO05D008302 4.5e-87 324.7 180 82.8
PGSC0003DMG400009297 Solanum tuberosum HOM05D006675 ORTHO05D008302 4.5e-87 324.7 180 83.3
Ciclev10002637m.g Citrus clementina HOM05D006675 ORTHO05D008302 9.9e-87 323.6 180 85.6
Manes.01G194600 Manihot esculenta HOM05D006675 ORTHO05D008302 1.7e-86 322.8 180 85.0
BcaNung04023 Brassica carinata HOM05D006675 ORTHO05D008302 2.2e-86 322.4 180 83.9
CAN.G773.29 Capsicum annuum HOM05D006675 ORTHO05D008302 2.2e-86 322.4 180 83.3
Sp7g17730 Schrenkiella parvula HOM05D006675 ORTHO05D008302 2.2e-86 322.4 180 84.4
VMungo1215G1847 Vigna mungo HOM05D006675 ORTHO05D008302 2.2e-86 322.4 180 83.9
Aqoxy5G00552 Aquilegia oxysepala HOM05D006675 ORTHO05D008302 2.9e-86 322.0 180 83.9
AT4G19003 Arabidopsis thaliana HOM05D006675 ORTHO05D008302 2.9e-86 322.0 180 84.4
Cc08_g03740 Coffea canephora HOM05D006675 ORTHO05D008302 2.9e-86 322.0 180 82.2
BraA01t01049Z Brassica rapa HOM05D006675 ORTHO05D008302 3.8e-86 321.6 180 83.3
Lj2g0021996 Lotus japonicus HOM05D006675 ORTHO05D008302 4.9e-86 321.2 180 82.8
Thhalv10026368m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 6.4e-86 320.9 180 82.8
MSTRG.1795 Avicennia marina HOM05D006675 ORTHO05D008302 8.4e-86 320.5 180 82.2
BcaC09g51446 Brassica carinata HOM05D000169 ORTHO05D008302 8.4e-86 320.5 180 82.8
BolC1t01279H Brassica oleracea HOM05D000169 ORTHO05D000542 8.4e-86 320.5 180 82.8
Sc10g0009260 Simmondsia chinensis HOM05D006675 ORTHO05D008302 8.4e-86 320.5 180 81.7
Migut.E01322 Erythranthe guttata HOM05D006675 ORTHO05D008302 1.1e-85 320.1 180 83.9
Lalb_Chr16g0380971 Lupinus albus HOM05D006675 ORTHO05D008302 1.1e-85 320.1 180 83.3
SalBow8G0964 Salvia bowleyana HOM05D006675 ORTHO05D008302 1.1e-85 320.1 180 82.2
Carub.0007s2216 Capsella rubella HOM05D006675 ORTHO05D008302 1.4e-85 319.7 180 82.8
C01p13040 Brassica napus HOM05D000169 ORTHO05D000542 2.4e-85 318.9 180 82.8
AL7G35150 Arabidopsis lyrata HOM05D006675 ORTHO05D008302 4.2e-85 318.2 180 82.8
CSS0012354 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 4.2e-85 318.2 180 82.8
CSS0042811 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 4.2e-85 318.2 180 82.8
Medtr5g028000 Medicago truncatula HOM05D006675 ORTHO05D008302 4.2e-85 318.2 180 82.2
PSO017G0801 Papaver somniferum HOM05D006675 ORTHO05D008302 4.2e-85 318.2 178 84.8
Phvul.002G134300 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 5.5e-85 317.8 180 82.2
CARHR225840 Cardamine hirsuta HOM05D006675 ORTHO05D008302 7.1e-85 317.4 180 82.2
THA.LOC104806177 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 1.6e-84 316.2 180 81.7
Nn1g09734 Nelumbo nucifera HOM05D006675 ORTHO05D008302 6.0e-84 314.3 180 81.7
THA.LOC104798450 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 6.0e-84 314.3 178 81.5
Prupe.4G182100 Prunus persica HOM05D006675 ORTHO05D008302 7.9e-84 313.9 179 82.7
Glyma.09G209600 Glycine max HOM05D006675 ORTHO05D008302 1.0e-83 313.5 180 81.1
MD11G1243800 Malus domestica HOM05D006675 ORTHO05D008302 3.0e-83 312.0 181 81.2
HPP92_023365 Vanilla planifolia HOM05D006675 ORTHO05D008302 5.1e-83 311.2 180 80.0
DCAR_024956 Daucus carota HOM05D006675 ORTHO05D008302 8.7e-83 310.5 180 80.6
ATR0796G253 Amborella trichopoda HOM05D006675 ORTHO05D008302 1.5e-82 309.7 178 79.2
Lj8A133G65 Lonicera japonica HOM05D006675 ORTHO05D008302 7.4e-82 307.4 199 72.9
HanXRQChr12g0362191 Helianthus annuus HOM05D006675 ORTHO05D008302 1.3e-81 306.6 180 78.3
Aa31LG6G1700 Aethionema arabicum HOM05D006675 ORTHO05D008302 1.6e-81 306.2 181 80.1
Glyma.01G011400 Glycine max HOM05D006675 ORTHO05D008302 2.8e-81 305.4 180 78.3
ECA233G1922 Erigeron canadensis HOM05D006675 ORTHO05D008302 1.1e-80 303.5 180 76.7
BcaNung06620 Brassica carinata HOM05D006675 ORTHO05D008302 2.6e-79 298.9 203 70.9
HanXRQChr14g0430781 Helianthus annuus HOM05D006675 ORTHO05D008302 3.4e-79 298.5 187 74.3
Rhsim06G0208000 Rhododendron simsii HOM05D006675 ORTHO05D008302 7.6e-79 297.4 206 71.4
Actinidia01330 Actinidia chinensis HOM05D006675 ORTHO05D008302 1.4e-77 293.1 165 81.2
Zm00001eb157890 Zea mays HOM05D006675 ORTHO05D008302 1.9e-77 292.7 180 77.2
Oeu017091.1 Olea europaea HOM05D006675 ORTHO05D008302 1.6e-76 289.7 160 85.6
Peaxi162Scf00052g00336 Petunia axillaris HOM05D006675 ORTHO05D008302 2.3e-75 285.8 159 83.0
Eucgr.E01319 Eucalyptus grandis HOM05D006675 ORTHO05D008302 4.3e-74 281.6 174 76.4
Dinv06918 Davidia involucrata HOM05D006675 ORTHO05D008302 5.7e-74 281.2 159 83.6
AUR62007364 Chenopodium quinoa HOM05D006675 ORTHO05D008302 7.4e-74 280.8 160 81.9
ClCG06G010630 Citrullus lanatus HOM05D006675 ORTHO05D008302 1.6e-73 279.6 172 80.2
SGA_v2.0_scaffold8G04421 Striga asiatica HOM05D006675 ORTHO05D008302 1.6e-73 279.6 161 80.7
SEGI_13659 Sequoiadendron giganteum HOM05D006675 ORTHO05D008302 3.7e-73 278.5 177 72.3
Eucgr.E01313 Eucalyptus grandis HOM05D006675 ORTHO05D008302 6.3e-73 277.7 175 74.9
CDE02G0997 Ceratophyllum demersum HOM05D006675 ORTHO05D008302 8.2e-73 277.3 178 74.2
Ca_25161_v3 Cicer arietinum L. HOM05D006675 ORTHO05D000003 1.5e-71 273.1 160 78.8
unitig_61.g26418 Utricularia gibba HOM05D006675 ORTHO05D008302 2.6e-71 272.3 162 78.4
Thhalv10015765m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 5.9e-71 271.2 167 76.6
Mapoly0004s0185 Marchantia polymorpha HOM05D006675 ORTHO05D008302 1.0e-70 270.4 175 67.4
Nitab4.5_0002897g0050 Nicotiana tabacum HOM05D006675 ORTHO05D008302 1.3e-70 270.0 180 71.7
Lsat_1_v5_gn_9_15400 Lactuca sativa HOM05D006675 ORTHO05D008302 6.5e-70 267.7 156 78.2
EL10Ac5g11997 Beta vulgaris HOM05D006675 ORTHO05D008302 5.5e-69 264.6 164 75.0
SMO364G0912 Selaginella moellendorffii HOM05D006675 ORTHO05D008302 2.7e-68 262.3 175 66.3
Gorai.003G186000 Gossypium raimondii HOM05D006675 ORTHO05D008302 6.1e-68 261.2 139 87.1
Dinv29017 Davidia involucrata HOM05D006675 ORTHO05D008302 2.5e-66 255.8 153 77.1
Sabra01G0105000 Salix brachista HOM05D006675 ORTHO05D008302 2.5e-66 255.8 218 62.4
Pp3c15_1420 Physcomitrium patens HOM05D006675 ORTHO05D008302 7.4e-66 254.2 175 65.1
TPR.G19460 Trifolium pratense HOM05D006675 ORTHO05D008302 6.3e-65 251.1 139 82.7
Nitab4.5_0002188g0010 Nicotiana tabacum HOM05D006675 ORTHO05D008302 3.0e-59 232.3 181 64.6
CBR_g10842 Chara braunii HOM05D006675 ORTHO05D008302 8.8e-59 230.7 171 60.2
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 9.4e-53 210.7 114 81.6
Cre02.g076400 Chlamydomonas reinhardtii HOM05D006675 ORTHO05D008302 1.1e-50 203.8 174 52.3
SGA_v2.0_scaffold8G04249 Striga asiatica HOM05D006675 ORTHO05D008302 3.3e-50 202.2 121 76.9
AagrBONN_evm.TU.Sc2ySwM_228.5837 Anthoceros agrestis HOM05D006675 ORTHO05D008302 1.3e-46 190.3 146 63.7
arahy.Tifrunner.gnm1.ann1.XR7VEH Arachis hypogaea HOM05D006675 ORTHO05D008302 1.3e-46 190.3 117 70.9
arahy.Tifrunner.gnm1.ann1.1JB7Z5 Arachis hypogaea HOM05D000001 ORTHO05D000003 6.7e-43 177.9 185 55.1
arahy.Tifrunner.gnm1.ann1.K4EES2 Arachis hypogaea HOM05D000001 ORTHO05D000003 6.7e-43 177.9 185 55.1
Ah.12g055570 Amaranthus hybridus HOM05D000160 ORTHO05D008302 5.0e-38 161.8 110 71.8
PRCOL_00001914 Prasinoderma coloniale HOM05D006675 ORTHO05D008302 8.5e-38 161.0 176 44.9
Os01g0658500 Oryza sativa ssp. japonica HOM05D006675 ORTHO05D008302 7.2e-37 157.9 93 74.2
vmacro00263 Vaccinium macrocarpon HOM05D006675 ORTHO05D008302 6.1e-36 154.8 96 76.0
Psat2g139880 Pisum sativum HOM05D006675 ORTHO05D008302 1.0e-35 154.1 91 79.1
MCO12G007 Micromonas commoda HOM05D006675 ORTHO05D008302 1.4e-35 153.7 174 42.0
arahy.Tifrunner.gnm1.ann1.DBHH8D Arachis hypogaea HOM05D006675 ORTHO05D008302 3.7e-33 145.6 116 59.5
Hma1.2p1_0803F.1_g220920 Hydrangea macrophylla HOM05D006675 ORTHO05D008302 8.3e-33 144.4 178 45.5
GSVIVG01009131001 Vitis vinifera HOM05D006675 ORTHO05D008302 1.0e-27 127.5 80 72.5
CARHR288450 Cardamine hirsuta HOM05D006675 ORTHO05D008302 2.0e-23 113.2 71 66.2
BcaB07g30589 Brassica carinata HOM05D006675 ORTHO05D008302 4.5e-23 112.1 99 59.6
Actinidia29284 Actinidia chinensis HOM05D006675 ORTHO05D008302 8.6e-22 107.8 64 75.0
BcaB06g29627 Brassica carinata HOM05D006675 ORTHO05D008302 5.6e-21 105.1 100 60.0
Hund14383 Selenicereus undatus HOM05D006675 ORTHO05D008302 2.0e-18 96.7 56 78.6
A01p11020 Brassica napus HOM05D006675 ORTHO05D008302 3.4e-18 95.9 56 85.7
Haze_08131 Corylus avellana HOM05D006675 ORTHO05D008302 5.4e-16 88.6 50 84.0
FAN13G1728 Fragaria x ananassa HOM05D006675 ORTHO05D008302 1.0e-14 84.3 46 84.8
Cfa024503 Carpinus fangiana HOM05D006675 ORTHO05D008302 1.9e-08 63.5 165 24.8
Gohir.D12G043050 Gossypium hirsutum HOM05D006675 ORTHO05D008302 1.2e-07 60.8 38 71.1
Phvul.002G134150 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 3.9e-06 55.8 57 50.9


User provided reference genes

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