Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G2303 Cannabis sativa HOM05D006008 ORTHO05D007334 3.2e-141 506.5 361 100.0
CANSAT56G1562 Cannabis sativa HOM05D006008 ORTHO05D007334 8.1e-97 359.0 248 75.4
CANSAT80G2648 Cannabis sativa HOM05D006008 ORTHO05D007334 2.7e-92 344.0 248 70.2
CANSAT80G0905 Cannabis sativa HOM05D006008 ORTHO05D007334 1.0e-91 342.0 248 71.0
CANSAT54G0183 Cannabis sativa HOM05D006008 ORTHO05D007334 3.1e-88 330.5 360 74.2
CANSAT54G1994 Cannabis sativa HOM05D006008 ORTHO05D007334 4.5e-87 326.6 246 69.1
CANSAT21G0760 Cannabis sativa HOM05D006008 ORTHO05D007334 1.4e-80 305.1 251 65.7
Manes.08G047700 Manihot esculenta HOM05D006008 ORTHO05D007334 2.0e-66 258.1 248 56.5
Sabra06G0206900 Salix brachista HOM05D006008 ORTHO05D007334 3.8e-62 243.8 245 54.7
Dinv08184 Davidia involucrata HOM05D006008 ORTHO05D007334 5.0e-62 243.4 234 58.1
Haze_21405 Corylus avellana HOM05D006008 ORTHO05D007334 8.5e-62 242.7 241 56.0
Potri.006G264800 Populus trichocarpa HOM05D006008 ORTHO05D007334 8.5e-62 242.7 246 54.5
TWI63G1661 Tripterygium wilfordii HOM05D006008 ORTHO05D007334 1.4e-61 241.9 242 53.3
Cfa013044 Carpinus fangiana HOM05D006008 ORTHO05D007334 1.9e-61 241.5 239 56.9
Thecc.09G015100 Theobroma cacao HOM05D006008 ORTHO05D007334 7.2e-61 239.6 243 56.4
Duzib187G0883 Durio zibethinus HOM05D006008 ORTHO05D007334 9.4e-61 239.2 244 52.9
Cpa.g.sc148.18 Carica papaya HOM05D006008 ORTHO05D007334 1.2e-60 238.8 248 52.8
Actinidia23109 Actinidia chinensis HOM05D006008 ORTHO05D007334 1.6e-60 238.4 222 58.1
Migut.A00359 Erythranthe guttata HOM05D006008 ORTHO05D007334 8.0e-60 236.1 220 55.5
RcHm_v2.0_Chr6g0299351 Rosa chinensis HOM05D006008 ORTHO05D007334 1.0e-59 235.7 202 58.9
Phvul.009G086500 Phaseolus vulgaris HOM05D006008 ORTHO05D007334 1.8e-59 235.0 236 57.2
CSS0033722 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 5.2e-59 233.4 197 65.0
PGR142G1849 Punica granatum HOM05D006008 ORTHO05D007334 5.2e-59 233.4 197 62.9
Atru.chr7.2558 Acer truncatum HOM05D006008 ORTHO05D007334 6.7e-59 233.0 247 53.0
QL02p018792 Quercus lobata HOM05D006008 ORTHO05D007334 6.7e-59 233.0 168 70.2
Lj7P735T18 Lonicera japonica HOM05D006008 ORTHO05D007334 3.3e-58 230.7 170 68.2
vmacro05220 Vaccinium macrocarpon HOM05D006008 ORTHO05D007334 3.3e-58 230.7 223 55.2
Nitab4.5_0000147g0080 Nicotiana tabacum HOM05D006008 ORTHO05D007334 4.4e-58 230.3 252 52.4
MD08G1055800 Malus domestica HOM05D006008 ORTHO05D007334 9.7e-58 229.2 219 58.0
Rhsim07G0155900 Rhododendron simsii HOM05D006008 ORTHO05D007334 9.7e-58 229.2 199 60.8
arahy.Tifrunner.gnm1.ann1.HZWF25 Arachis hypogaea HOM05D006008 ORTHO05D007334 1.7e-57 228.4 230 53.0
TAR362G1189 Trochodendron aralioides HOM05D006008 ORTHO05D007334 2.8e-57 227.6 215 59.1
DCAR_022863 Daucus carota HOM05D006008 ORTHO05D007334 6.3e-57 226.5 225 56.0
FAN27G1628 Fragaria x ananassa HOM05D006008 ORTHO05D007334 6.3e-57 226.5 200 59.0
arahy.Tifrunner.gnm1.ann1.E59C1E Arachis hypogaea HOM05D006008 ORTHO05D007334 1.1e-56 225.7 232 52.6
Sc09g0010690 Simmondsia chinensis HOM05D006008 ORTHO05D007334 1.1e-56 225.7 210 59.0
FAN20G2406 Fragaria x ananassa HOM05D006008 ORTHO05D007334 2.4e-56 224.6 200 58.5
CSS0025914 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 4.1e-56 223.8 171 67.3
FvH4_2g41180 Fragaria vesca HOM05D006008 ORTHO05D007334 4.1e-56 223.8 196 59.2
Hund20025 Selenicereus undatus HOM05D006008 ORTHO05D007334 4.1e-56 223.8 227 53.7
Solyc04g015440.4 Solanum lycopersicum HOM05D006008 ORTHO05D007334 1.6e-55 221.9 170 65.9
Sopen04g007490 Solanum pennellii HOM05D006008 ORTHO05D007334 1.6e-55 221.9 170 65.9
PGSC0003DMG400027232 Solanum tuberosum HOM05D006008 ORTHO05D007334 1.6e-55 221.9 170 65.9
Gorai.009G063400 Gossypium raimondii HOM05D006008 ORTHO05D007334 4.5e-55 220.3 240 51.7
VMungo1309G2388 Vigna mungo HOM05D006008 ORTHO05D007334 5.9e-55 219.9 185 63.2
CAN.G676.42 Capsicum annuum HOM05D006008 ORTHO05D007334 7.7e-55 219.5 170 66.5
FAN15G1576 Fragaria x ananassa HOM05D006008 ORTHO05D007334 1.0e-54 219.2 200 57.5
Gohir.D05G062300 Gossypium hirsutum HOM05D006008 ORTHO05D007334 1.0e-54 219.2 240 51.2
Lsat_1_v5_gn_2_36140 Lactuca sativa HOM05D006008 ORTHO05D007334 1.7e-54 218.4 249 49.0
SGA_v2.0_scaffold147G36344 Striga asiatica HOM05D006008 ORTHO05D007334 1.7e-54 218.4 206 54.9
Ca_15782_v3 Cicer arietinum L. HOM05D006008 ORTHO05D007334 2.9e-54 217.6 252 48.0
Peaxi162Scf01286g00125 Petunia axillaris HOM05D006008 ORTHO05D007334 2.9e-54 217.6 170 65.3
ECA234G3283 Erigeron canadensis HOM05D006008 ORTHO05D007334 1.1e-53 215.7 186 58.6
CSS0011965 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 4.2e-53 213.8 151 70.2
CSS0032373 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 4.2e-53 213.8 151 70.2
Gohir.A05G060100 Gossypium hirsutum HOM05D006008 ORTHO05D007334 4.2e-53 213.8 238 49.6
Medtr3g105900 Medicago truncatula HOM05D006008 ORTHO05D007334 4.2e-53 213.8 173 62.4
ClCG05G016190 Citrullus lanatus HOM05D006008 ORTHO05D007334 2.1e-52 211.5 191 56.0
MELO3C032315.2 Cucumis melo HOM05D006008 ORTHO05D007334 2.1e-52 211.5 193 57.0
Glyma.06G061000 Glycine max HOM05D006008 ORTHO05D007334 3.6e-52 210.7 181 62.4
Psat5g033520 Pisum sativum HOM05D006008 ORTHO05D007334 3.6e-52 210.7 177 59.3
SalBow4G1429 Salvia bowleyana HOM05D006008 ORTHO05D007334 3.6e-52 210.7 220 52.3
TPR.G1871 Trifolium pratense HOM05D006008 ORTHO05D007334 3.6e-52 210.7 255 48.2
Prupe.1G394600 Prunus persica HOM05D006008 ORTHO05D007334 6.1e-52 209.9 200 57.0
PSO384G1678 Papaver somniferum HOM05D006008 ORTHO05D007334 8.0e-52 209.5 191 57.6
Lj1g0008194 Lotus japonicus HOM05D006008 ORTHO05D007334 1.4e-51 208.8 238 50.0
AUR62041936 Chenopodium quinoa HOM05D006008 ORTHO05D007334 1.8e-51 208.4 194 59.3
arahy.Tifrunner.gnm1.ann1.6M8E1A Arachis hypogaea HOM05D006008 ORTHO05D007334 1.2e-50 205.7 213 51.6
Aqoxy7G02519 Aquilegia oxysepala HOM05D006008 ORTHO05D007334 3.3e-50 204.1 170 61.2
Sed0007713 Sechium edule HOM05D006008 ORTHO05D007334 4.4e-50 203.8 194 54.6
Ah.04g163370 Amaranthus hybridus HOM05D002153 ORTHO05D002137 1.3e-49 202.2 190 57.9
BraA03t15143Z Brassica rapa HOM05D006008 ORTHO05D007334 1.3e-49 202.2 231 51.1
arahy.Tifrunner.gnm1.ann1.83E5X5 Arachis hypogaea HOM05D006008 ORTHO05D007334 8.2e-49 199.5 212 52.4
CSS0018849 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 5.3e-48 196.8 171 62.6
Lalb_Chr23g0268201 Lupinus albus HOM05D006008 ORTHO05D007334 1.2e-47 195.7 172 58.7
CSS0030467 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.0e-47 194.9 194 57.2
ATR0580G290 Amborella trichopoda HOM05D006008 ORTHO05D007334 7.7e-47 193.0 200 52.5
CSS0002096 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 5.0e-46 190.3 201 57.2
CSS0046362 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 7.2e-45 186.4 198 55.6
THA.LOC104803618 Tarenaya hassleriana HOM05D006008 ORTHO05D007334 3.6e-44 184.1 221 47.5
GSVIVG01035975001 Vitis vinifera HOM05D006008 ORTHO05D007334 1.8e-43 181.8 190 52.1
CSS0013958 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.2e-42 179.1 139 66.2
Nn7g36097 Nelumbo nucifera HOM05D006008 ORTHO05D007334 7.5e-42 176.4 199 50.8
CiPaw.08G005700 Carya illinoinensis HOM05D006008 ORTHO05D007334 1.7e-41 175.3 120 71.7
CANSAT21G2219 Cannabis sativa HOM05D006008 ORTHO05D007334 1.4e-40 172.2 226 53.1
HanXRQChr09g0270581 Helianthus annuus HOM05D006008 ORTHO05D007334 2.4e-40 171.4 139 59.7
BcaNung01494 Brassica carinata HOM05D006008 ORTHO05D007334 4.1e-40 170.6 203 47.8
A03p61020 Brassica napus HOM05D006008 ORTHO05D007334 5.4e-40 170.2 207 48.3
Aa31LG2G18380 Aethionema arabicum HOM05D006008 ORTHO05D007334 9.1e-40 169.5 156 54.5
Oeu001622.3 Olea europaea HOM05D006008 ORTHO05D007334 2.7e-39 167.9 129 65.9
Nitab4.5_0001663g0180 Nicotiana tabacum HOM05D006008 ORTHO05D007334 3.5e-39 167.5 129 65.9
Carub.0007s0870 Capsella rubella HOM05D006008 ORTHO05D007334 7.7e-39 166.4 179 52.0
C07p58920 Brassica napus HOM05D006008 ORTHO05D007334 1.7e-38 165.2 205 49.3
BolC7t46339H Brassica oleracea HOM05D006008 ORTHO05D007334 1.7e-38 165.2 205 49.3
CDE02G3851 Ceratophyllum demersum HOM05D006008 ORTHO05D007334 1.1e-37 162.5 177 50.3
Eucgr.C01897 Eucalyptus grandis HOM05D006008 ORTHO05D007334 1.9e-37 161.8 107 72.9
Cc08_g07210 Coffea canephora HOM05D006008 ORTHO05D007334 6.1e-36 156.8 157 54.8
CARHR239780 Cardamine hirsuta HOM05D006008 ORTHO05D007334 1.4e-35 155.6 166 52.4
AL7G20130 Arabidopsis lyrata HOM05D006008 ORTHO05D007334 4.0e-35 154.1 166 53.6
MBI15_g18236_MAGBIO Magnolia biondii HOM05D006008 ORTHO05D007334 5.2e-35 153.7 173 52.0
CSS0039067 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 8.9e-35 152.9 171 50.9
Ciclev10007356m.g Citrus clementina HOM05D006008 ORTHO05D007334 1.5e-34 152.1 116 63.8
Sp7g29660 Schrenkiella parvula HOM05D006008 ORTHO05D007334 2.8e-33 147.9 179 50.3
Thhalv10024264m.g Eutrema salsugineum HOM05D006008 ORTHO05D007334 8.3e-33 146.4 168 50.0
EL10Ac4g08536 Beta vulgaris HOM05D006008 ORTHO05D007334 1.4e-32 145.6 152 52.6
AT4G31850 Arabidopsis thaliana HOM05D006008 ORTHO05D007334 3.1e-32 144.4 152 53.3
Nn7g37618 Nelumbo nucifera HOM05D006008 ORTHO05D007334 2.0e-31 141.7 167 49.1
BraA01t00604Z Brassica rapa HOM05D006008 ORTHO05D007334 6.6e-30 136.7 143 53.8
Zm00001eb393290 Zea mays HOM05D006008 ORTHO05D007334 1.5e-29 135.6 134 51.5
Os10g0421800 Oryza sativa ssp. japonica HOM05D006008 ORTHO05D007334 3.3e-29 134.4 128 53.1
C01p07070 Brassica napus HOM05D006008 ORTHO05D007334 9.5e-29 132.9 171 48.0
A01p06430 Brassica napus HOM05D006008 ORTHO05D007334 1.2e-28 132.5 172 48.8
BcaC09g51977 Brassica carinata HOM05D006008 ORTHO05D007334 3.6e-28 131.0 172 47.1
ATR0180G020 Amborella trichopoda HOM05D006008 ORTHO05D007334 8.0e-28 129.8 129 52.7
SEGI_41266 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 2.2e-25 121.7 171 44.4
MSTRG.11782 Avicennia marina HOM05D006008 ORTHO05D007334 3.7e-25 120.9 121 53.7
BolC1t00699H Brassica oleracea HOM05D006008 ORTHO05D007334 2.8e-20 104.8 180 40.0
AUR62041257 Chenopodium quinoa HOM05D006008 ORTHO05D007334 1.4e-19 102.4 117 52.1
COL.COLO4_18956 Corchorus olitorius HOM05D006008 ORTHO05D007334 1.8e-19 102.1 111 52.3
SEGI_02316 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 3.1e-19 101.3 129 45.0
BcaNung03118 Brassica carinata HOM05D006008 ORTHO05D007334 5.1e-14 84.0 62 64.5
BcaNung03117 Brassica carinata HOM05D006008 ORTHO05D007334 2.6e-10 71.6 102 45.1
QL04p089735 Quercus lobata HOM05D022192 ORTHO05D009908 7.1e-08 63.5 45 64.4
CANSAT54G1800 Cannabis sativa HOM05D006008 ORTHO05D007334 9.2e-08 63.2 39 71.8
Gohir.A12G183600 Gossypium hirsutum HOM05D005362 ORTHO05D006895 6.6e-06 57.0 119 31.1


User provided reference genes

Program Settings