Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G2254 Cannabis sativa HOM05D006363 ORTHO05D007920 3.7e-106 388.3 200 100.0
CANSAT21G0627 Cannabis sativa HOM05D006363 ORTHO05D007920 2.2e-103 379.0 200 99.0
Gohir.D12G260100 Gossypium hirsutum HOM05D006363 ORTHO05D007920 8.8e-76 287.3 195 75.4
Gohir.A12G258900 Gossypium hirsutum HOM05D006363 ORTHO05D007920 2.0e-75 286.2 197 74.6
Prupe.2G292400 Prunus persica HOM05D006363 ORTHO05D007920 2.0e-75 286.2 204 76.5
Gorai.008G278600 Gossypium raimondii HOM05D006363 ORTHO05D007920 3.3e-75 285.4 195 74.9
FAN06G3284 Fragaria x ananassa HOM05D006363 ORTHO05D007920 4.4e-75 285.0 197 77.7
FAN06G3928 Fragaria x ananassa HOM05D006363 ORTHO05D007920 4.4e-75 285.0 197 77.7
FvH4_7g29240 Fragaria vesca HOM05D006363 ORTHO05D007920 5.7e-75 284.6 197 77.7
Cfa008303 Carpinus fangiana HOM05D006363 ORTHO05D007920 1.3e-74 283.5 200 73.5
TWI39G0139 Tripterygium wilfordii HOM05D006363 ORTHO05D007920 1.3e-74 283.5 199 73.9
FAN10G0438 Fragaria x ananassa HOM05D006363 ORTHO05D007920 2.2e-74 282.7 197 76.6
Glyma.10G237500 Glycine max HOM05D006363 ORTHO05D007920 2.8e-74 282.3 203 73.4
Peaxi162Scf00915g00018 Petunia axillaris HOM05D006363 ORTHO05D007920 6.3e-74 281.2 203 73.4
Rhsim09G0197500 Rhododendron simsii HOM05D006363 ORTHO05D007920 8.2e-74 280.8 194 74.7
RcHm_v2.0_Chr1g0376991 Rosa chinensis HOM05D006363 ORTHO05D007920 1.1e-73 280.4 201 75.1
COL.COLO4_14288 Corchorus olitorius HOM05D006363 ORTHO05D007920 1.8e-73 279.6 195 72.8
VMungo0720G1872 Vigna mungo HOM05D006363 ORTHO05D007920 1.8e-73 279.6 197 73.6
Haze_13734 Corylus avellana HOM05D006363 ORTHO05D007920 2.4e-73 279.3 200 73.0
Sabra15G0151200 Salix brachista HOM05D006363 ORTHO05D007920 5.3e-73 278.1 199 73.4
Duzib205G1779 Durio zibethinus HOM05D006363 ORTHO05D007920 6.9e-73 277.7 198 73.2
FAN03G1027 Fragaria x ananassa HOM05D006363 ORTHO05D007920 6.9e-73 277.7 198 77.3
Phvul.007G068100 Phaseolus vulgaris HOM05D006363 ORTHO05D007920 9.1e-73 277.3 195 73.3
Medtr1g100753 Medicago truncatula HOM05D006363 ORTHO05D007920 2.0e-72 276.2 208 72.1
vmacro09843 Vaccinium macrocarpon HOM05D006363 ORTHO05D007920 2.0e-72 276.2 194 72.2
Psat6g200600 Pisum sativum HOM05D006363 ORTHO05D007920 2.6e-72 275.8 207 72.5
Potri.015G140600 Populus trichocarpa HOM05D006363 ORTHO05D007920 2.6e-72 275.8 200 72.0
Glyma.20G157100 Glycine max HOM05D006363 ORTHO05D007920 4.5e-72 275.0 202 71.8
MD01G1199000 Malus domestica HOM05D006363 ORTHO05D007920 4.5e-72 275.0 198 73.7
CiPaw.03G104700 Carya illinoinensis HOM05D006363 ORTHO05D007920 5.9e-72 274.6 195 72.8
Ciclev10007013m.g Citrus clementina HOM05D006363 ORTHO05D007920 5.9e-72 274.6 202 71.8
Thecc.03G174500 Theobroma cacao HOM05D006363 ORTHO05D007920 7.7e-72 274.2 197 72.6
Manes.07G111200 Manihot esculenta HOM05D006363 ORTHO05D007920 1.3e-71 273.5 200 73.0
AUR62021214 Chenopodium quinoa HOM05D006363 ORTHO05D007920 1.7e-71 273.1 200 69.5
QL09p014582 Quercus lobata HOM05D006363 ORTHO05D007920 1.7e-71 273.1 203 70.9
MD07G1266800 Malus domestica HOM05D006363 ORTHO05D007920 2.2e-71 272.7 196 74.5
Ca_10782_v3 Cicer arietinum L. HOM05D006363 ORTHO05D007920 3.8e-71 271.9 200 73.5
Atru.chr1.482 Acer truncatum HOM05D006363 ORTHO05D007920 6.5e-71 271.2 195 69.7
TPR.G14326 Trifolium pratense HOM05D006363 ORTHO05D007920 8.5e-71 270.8 200 72.0
AUR62016007 Chenopodium quinoa HOM05D006363 ORTHO05D007920 1.4e-70 270.0 194 70.6
FAN03G1282 Fragaria x ananassa HOM05D006363 ORTHO05D007920 5.5e-70 268.1 198 76.3
Nitab4.5_0000716g0210 Nicotiana tabacum HOM05D006363 ORTHO05D007920 5.5e-70 268.1 202 70.3
Dinv28459 Davidia involucrata HOM05D006363 ORTHO05D007920 1.2e-69 266.9 209 67.5
Nitab4.5_0001508g0030 Nicotiana tabacum HOM05D006363 ORTHO05D007920 1.2e-69 266.9 204 68.6
PGSC0003DMG400014325 Solanum tuberosum HOM05D006363 ORTHO05D007920 1.6e-69 266.5 204 70.6
PGR042G3170 Punica granatum HOM05D006363 ORTHO05D007920 4.7e-69 265.0 207 69.1
LjContig00238g0019616 Lotus japonicus HOM05D006363 ORTHO05D007920 6.1e-69 264.6 199 69.3
Cc03_g13850 Coffea canephora HOM05D006363 ORTHO05D007920 7.9e-69 264.2 202 67.3
Solyc03g025990.1 Solanum lycopersicum HOM05D006363 ORTHO05D007920 5.2e-68 261.5 205 68.8
Sopen03g004810 Solanum pennellii HOM05D006363 ORTHO05D007920 5.2e-68 261.5 205 68.8
Oeu062762.2 Olea europaea HOM05D006363 ORTHO05D007920 6.7e-68 261.2 202 66.8
Cpa.g.sc107.33 Carica papaya HOM05D006363 ORTHO05D007920 8.8e-68 260.8 201 66.7
EL10Ac3g05667 Beta vulgaris HOM05D006363 ORTHO05D007920 1.1e-67 260.4 195 67.7
MELO3C006895.2 Cucumis melo HOM05D006363 ORTHO05D007920 1.1e-67 260.4 202 69.8
Eucgr.A02801 Eucalyptus grandis HOM05D006363 ORTHO05D007920 1.1e-67 260.4 203 66.0
THA.LOC104811988 Tarenaya hassleriana HOM05D006363 ORTHO05D007920 5.7e-67 258.1 198 67.2
Migut.F01133 Erythranthe guttata HOM05D006363 ORTHO05D007920 9.7e-67 257.3 199 65.8
Lj8C25T12 Lonicera japonica HOM05D006363 ORTHO05D007920 9.7e-67 257.3 196 67.9
Lalb_Chr02g0140961 Lupinus albus HOM05D006363 ORTHO05D007920 9.7e-67 257.3 200 65.0
Sed0019375 Sechium edule HOM05D006363 ORTHO05D007920 1.3e-66 256.9 201 68.7
CsaV3_3G016980 Cucumis sativus L. HOM05D006363 ORTHO05D007920 1.7e-66 256.5 202 68.3
Thhalv10015742m.g Eutrema salsugineum HOM05D006363 ORTHO05D007920 1.7e-66 256.5 201 68.2
GSVIVG01010552001 Vitis vinifera HOM05D006363 ORTHO05D007920 1.7e-66 256.5 202 65.3
CARHR265110 Cardamine hirsuta HOM05D006363 ORTHO05D007920 2.2e-66 256.1 203 67.5
Nn6g34197 Nelumbo nucifera HOM05D006363 ORTHO05D007920 3.7e-66 255.4 204 65.2
Aa31LG3G8570 Aethionema arabicum HOM05D006363 ORTHO05D007920 4.8e-66 255.0 195 67.7
BcaC01g06171 Brassica carinata HOM05D006363 ORTHO05D007920 2.4e-65 252.7 200 67.0
Carub.0008s1228 Capsella rubella HOM05D006363 ORTHO05D007920 2.4e-65 252.7 202 67.3
BolC3t14244H Brassica oleracea HOM05D006363 ORTHO05D007920 5.3e-65 251.5 200 67.0
BraA03t10870Z Brassica rapa HOM05D006363 ORTHO05D007920 9.1e-65 250.8 200 66.5
C03p18470 Brassica napus HOM05D006363 ORTHO05D007920 2.6e-64 249.2 200 66.0
CSS0002932 Camellia sinensis var. sinensis HOM05D006363 ORTHO05D007920 4.5e-64 248.4 196 66.3
CSS0028509 Camellia sinensis var. sinensis HOM05D006363 ORTHO05D007920 5.9e-64 248.1 197 66.0
BcaB01g04190 Brassica carinata HOM05D006363 ORTHO05D007920 7.7e-64 247.7 200 66.0
AL8G26570 Arabidopsis lyrata HOM05D006363 ORTHO05D007920 3.8e-63 245.4 203 65.0
Ah.13g075440 Amaranthus hybridus HOM05D006363 ORTHO05D007920 5.0e-63 245.0 184 68.5
MSTRG.8448 Avicennia marina HOM05D006363 ORTHO05D007920 6.5e-63 244.6 200 63.5
AT5G52190 Arabidopsis thaliana HOM05D006363 ORTHO05D007920 1.1e-62 243.8 206 65.0
ECA238G0548 Erigeron canadensis HOM05D006363 ORTHO05D007920 1.9e-62 243.0 201 65.7
CAN.G947.11 Capsicum annuum HOM05D006363 ORTHO05D007920 2.5e-62 242.7 201 67.2
Lsat_1_v5_gn_2_133820 Lactuca sativa HOM05D006363 ORTHO05D007920 9.4e-62 240.7 202 62.9
HanXRQChr14g0462221 Helianthus annuus HOM05D006363 ORTHO05D007920 2.1e-61 239.6 201 63.2
Sp6g14440 Schrenkiella parvula HOM05D006363 ORTHO05D007920 2.7e-61 239.2 203 63.1
PSO782G5704 Papaver somniferum HOM05D006363 ORTHO05D007920 1.4e-60 236.9 220 59.1
DCAR_018188 Daucus carota HOM05D006363 ORTHO05D007920 5.2e-60 235.0 199 61.3
PSO478G1739 Papaver somniferum HOM05D006363 ORTHO05D007920 7.5e-59 231.1 219 58.9
unitig_60.g25545 Utricularia gibba HOM05D006363 ORTHO05D007920 2.2e-58 229.6 198 61.6
Aqoxy7G00395 Aquilegia oxysepala HOM05D006363 ORTHO05D007920 3.1e-57 225.7 205 60.0
TAR375G0304 Trochodendron aralioides HOM05D006363 ORTHO05D007920 3.1e-57 225.7 186 65.1
MBI04_g04731_MAGBIO Magnolia biondii HOM05D006363 ORTHO05D007920 1.2e-53 213.8 204 57.4
FAN01G1422 Fragaria x ananassa HOM05D006363 ORTHO05D007920 1.6e-53 213.4 196 62.2
Zm00001eb428810 Zea mays HOM05D006363 ORTHO05D007920 9.8e-51 204.1 211 54.0
CDE04G1845 Ceratophyllum demersum HOM05D006363 ORTHO05D007920 9.1e-49 197.6 182 58.2
Os04g0568600 Oryza sativa ssp. japonica HOM05D006363 ORTHO05D007920 4.5e-48 195.3 194 55.7
ATR0757G111 Amborella trichopoda HOM05D006363 ORTHO05D007920 1.1e-46 190.7 200 54.0
HPP92_021110 Vanilla planifolia HOM05D006363 ORTHO05D007920 3.3e-46 189.1 177 58.2
A03p15800 Brassica napus HOM05D006363 ORTHO05D007920 9.5e-46 187.6 144 70.1
Sc25g0000440 Simmondsia chinensis HOM05D006363 ORTHO05D007920 2.8e-45 186.0 150 64.7
SalBow2G2214 Salvia bowleyana HOM05D006363 ORTHO05D007920 4.7e-45 185.3 154 62.3
SEGI_31787 Sequoiadendron giganteum HOM05D006363 ORTHO05D007920 5.6e-38 161.8 201 48.3
Pp3c6_24270 Physcomitrium patens HOM05D006363 ORTHO05D007920 1.7e-34 150.2 213 44.6
A08p37210 Brassica napus HOM05D006363 ORTHO05D007920 1.8e-33 146.7 124 62.9
SMO367G0077 Selaginella moellendorffii HOM05D006363 ORTHO05D007920 5.4e-33 145.2 170 54.1
BcaC01g06168 Brassica carinata HOM05D006363 ORTHO05D007920 9.2e-25 117.9 95 64.2
BcaC06g36545 Brassica carinata HOM05D006363 ORTHO05D007920 5.6e-22 108.6 98 58.2
Mapoly0047s0087 Marchantia polymorpha HOM05D006363 ORTHO05D007920 8.1e-21 104.8 116 51.7
BolC5t32613H Brassica oleracea HOM05D006363 ORTHO05D007920 5.1e-15 85.5 67 64.2
C05p38730 Brassica napus HOM05D006363 ORTHO05D007920 1.9e-14 83.6 67 62.7
Pp3c17_12800 Physcomitrium patens HOM05D006363 ORTHO05D007920 1.6e-13 80.5 147 36.7
TPR.G33086 Trifolium pratense HOM05D006363 ORTHO05D007920 1.6e-13 80.5 59 72.9
TAR633G0106 Trochodendron aralioides HOM05D006363 ORTHO05D007920 1.1e-12 77.8 72 52.8
Actinidia03116 Actinidia chinensis HOM05D006363 ORTHO05D007920 1.8e-12 77.0 195 35.4
TAR291G0005 Trochodendron aralioides HOM05D006363 ORTHO05D007920 3.4e-11 72.8 71 52.1
TAR375G0495 Trochodendron aralioides HOM05D006363 ORTHO05D007920 3.4e-11 72.8 71 52.1
TAR624G1193 Trochodendron aralioides HOM05D006363 ORTHO05D007920 3.4e-11 72.8 71 52.1
BcaC01g06167 Brassica carinata HOM05D006363 ORTHO05D007920 7.6e-11 71.6 47 76.6
TAR614G0003 Trochodendron aralioides HOM05D006363 ORTHO05D007920 7.6e-11 71.6 71 52.1
TAR633G1276 Trochodendron aralioides HOM05D006363 ORTHO05D007920 7.6e-11 71.6 71 52.1
TAR383G0849 Trochodendron aralioides HOM05D003653 ORTHO05D004249 1.7e-10 70.5 71 50.7
TAR629G0450 Trochodendron aralioides HOM05D006363 ORTHO05D007920 2.9e-10 69.7 71 50.7
BcaC05g27871 Brassica carinata HOM05D006363 ORTHO05D007920 2.5e-06 56.6 42 66.7


User provided reference genes

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