Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G2240 Cannabis sativa HOM05D006455 ORTHO05D008098 1.2e-297 1025.8 513 100.0
Haze_08072 Corylus avellana HOM05D006455 ORTHO05D008098 2.0e-180 636.3 517 63.8
Cfa012584 Carpinus fangiana HOM05D006455 ORTHO05D008098 5.7e-180 634.8 517 63.2
Prupe.2G049600 Prunus persica HOM05D006455 ORTHO05D008098 1.4e-178 630.2 515 61.9
CiPaw.12G071600 Carya illinoinensis HOM05D006455 ORTHO05D008098 1.7e-176 623.2 514 61.7
GSVIVG01001915001 Vitis vinifera HOM05D006455 ORTHO05D008098 6.6e-176 621.3 515 62.1
MD02G1270700 Malus domestica HOM05D006455 ORTHO05D008098 9.5e-175 617.5 518 60.6
RcHm_v2.0_Chr7g0228451 Rosa chinensis HOM05D006455 ORTHO05D008098 2.3e-168 596.3 513 60.8
FvH4_5g32260 Fragaria vesca HOM05D006455 ORTHO05D008098 1.1e-167 594.0 510 61.0
FAN13G0315 Fragaria x ananassa HOM05D006455 ORTHO05D008098 8.1e-166 587.8 510 59.8
FAN18G4165 Fragaria x ananassa HOM05D006455 ORTHO05D008098 8.1e-166 587.8 510 60.4
QL12p000818 Quercus lobata HOM05D006455 ORTHO05D008098 1.7e-163 580.1 494 62.6
Thecc.01G205700 Theobroma cacao HOM05D006455 ORTHO05D008098 9.2e-162 574.3 514 58.6
Manes.12G057502 Manihot esculenta HOM05D006455 ORTHO05D008098 1.7e-160 570.1 517 56.5
Manes.12G057904 Manihot esculenta HOM05D006455 ORTHO05D008098 3.0e-160 569.3 517 56.5
Gorai.007G161800 Gossypium raimondii HOM05D006455 ORTHO05D008098 1.9e-159 566.6 509 57.2
Manes.12G057700 Manihot esculenta HOM05D006455 ORTHO05D008098 3.3e-159 565.8 517 56.3
Manes.12G057901 Manihot esculenta HOM05D006455 ORTHO05D008098 3.3e-159 565.8 517 56.3
CsaV3_3G001300 Cucumis sativus L. HOM05D006455 ORTHO05D008098 9.5e-159 564.3 517 55.9
TAR362G0985 Trochodendron aralioides HOM05D006455 ORTHO05D008098 1.6e-158 563.5 515 57.3
Gohir.A11G144500 Gossypium hirsutum HOM05D006455 ORTHO05D008098 3.6e-158 562.4 509 57.2
FAN08G0013 Fragaria x ananassa HOM05D006455 ORTHO05D004776 1.1e-157 560.8 492 59.6
Atru.chr6.3495 Acer truncatum HOM05D006455 ORTHO05D008098 9.9e-156 554.3 517 58.2
Ciclev10014895m.g Citrus clementina HOM05D006455 ORTHO05D008098 5.4e-154 548.5 520 57.1
TWI75G0274 Tripterygium wilfordii HOM05D006455 ORTHO05D008098 1.6e-153 547.0 513 55.4
Lalb_Chr16g0391751 Lupinus albus HOM05D006455 ORTHO05D008098 8.6e-152 541.2 517 54.5
COL.COLO4_29922 Corchorus olitorius HOM05D006455 ORTHO05D008098 4.4e-148 528.9 528 54.9
Rhsim13G0055500 Rhododendron simsii HOM05D006455 ORTHO05D008098 2.9e-147 526.2 483 55.9
Lj4g0021895 Lotus japonicus HOM05D006455 ORTHO05D008098 1.6e-145 520.4 514 54.1
Hund02815 Selenicereus undatus HOM05D006455 ORTHO05D008098 4.6e-145 518.8 510 52.4
ClCG10G001240 Citrullus lanatus HOM05D006455 ORTHO05D008098 1.0e-144 517.7 502 55.4
MELO3C013818.2 Cucumis melo HOM05D006455 ORTHO05D008098 1.7e-144 516.9 502 55.2
MSTRG.18514 Avicennia marina HOM05D006455 ORTHO05D008098 6.6e-144 515.0 514 52.9
Sopen09g013040 Solanum pennellii HOM05D006455 ORTHO05D008098 8.7e-144 514.6 515 50.9
Nn1g09557 Nelumbo nucifera HOM05D006455 ORTHO05D008098 2.5e-143 513.1 517 52.2
CSS0002127 Camellia sinensis var. sinensis HOM05D006455 ORTHO05D008098 3.3e-143 512.7 439 58.5
Cc04_g10320 Coffea canephora HOM05D006455 ORTHO05D008098 5.6e-143 511.9 513 52.2
SGA_v2.0_scaffold158G37512 Striga asiatica HOM05D006455 ORTHO05D008098 2.1e-142 510.0 539 52.1
Migut.D00764 Erythranthe guttata HOM05D006455 ORTHO05D008098 1.4e-141 507.3 517 52.8
Nitab4.5_0006514g0010 Nicotiana tabacum HOM05D006455 ORTHO05D008098 3.1e-141 506.1 512 52.7
Eucgr.K02350 Eucalyptus grandis HOM05D006455 ORTHO05D008098 4.0e-141 505.8 517 50.9
AUR62028628 Chenopodium quinoa HOM05D006455 ORTHO05D008098 5.3e-141 505.4 510 51.4
Cpa.g.sc8.27 Carica papaya HOM05D006455 ORTHO05D008098 6.9e-141 505.0 497 54.3
Lj1A106T21 Lonicera japonica HOM05D006455 ORTHO05D008098 6.9e-141 505.0 496 55.0
Glyma.16G105200 Glycine max HOM05D006455 ORTHO05D008098 3.4e-140 502.7 491 53.2
Psat4g108080 Pisum sativum HOM05D006455 ORTHO05D008098 1.3e-139 500.7 515 51.1
Nitab4.5_0000077g0170 Nicotiana tabacum HOM05D006455 ORTHO05D008098 6.4e-139 498.4 512 51.8
HanXRQChr01g0014041 Helianthus annuus HOM05D006455 ORTHO05D008098 1.1e-138 497.7 517 49.9
HanXRQChr01g0013871 Helianthus annuus HOM05D006455 ORTHO05D008098 7.1e-138 495.0 511 50.5
Sed0000077 Sechium edule HOM05D006455 ORTHO05D008098 9.3e-138 494.6 529 51.6
Sc05g0001610 Simmondsia chinensis HOM05D006455 ORTHO05D008098 3.5e-137 492.7 511 49.9
arahy.Tifrunner.gnm1.ann1.E0JCGG Arachis hypogaea HOM05D006455 ORTHO05D008098 1.7e-136 490.3 494 53.6
AUR62008053 Chenopodium quinoa HOM05D006455 ORTHO05D008098 3.0e-136 489.6 509 50.3
arahy.Tifrunner.gnm1.ann1.U8H9H1 Arachis hypogaea HOM05D006455 ORTHO05D008098 3.9e-136 489.2 493 54.0
Potri.014G174300 Populus trichocarpa HOM05D006455 ORTHO05D008098 6.6e-136 488.4 519 52.2
ECA248G0009 Erigeron canadensis HOM05D006455 ORTHO05D008098 3.3e-135 486.1 511 50.5
PGR044G2428 Punica granatum HOM05D006455 ORTHO05D008098 5.6e-135 485.3 516 50.0
Ca_30349_v3 Cicer arietinum L. HOM05D006455 ORTHO05D008098 1.3e-134 484.2 518 50.6
TPR.G31161 Trifolium pratense HOM05D006455 ORTHO05D008098 2.4e-133 479.9 516 50.8
Carub.0008s0792 Capsella rubella HOM05D006455 ORTHO05D008098 2.0e-132 476.9 517 49.7
CARHR183890 Cardamine hirsuta HOM05D006455 ORTHO05D008098 9.9e-132 474.6 513 49.7
Aqoxy2G04132 Aquilegia oxysepala HOM05D006455 ORTHO05D008098 2.2e-131 473.4 512 48.6
Lsat_1_v5_gn_5_176300 Lactuca sativa HOM05D006455 ORTHO05D008098 6.4e-131 471.9 515 48.3
Phvul.003G279900 Phaseolus vulgaris HOM05D006455 ORTHO05D008098 6.4e-131 471.9 506 50.4
VMungo0251G3325 Vigna mungo HOM05D006455 ORTHO05D008098 6.4e-131 471.9 513 50.3
Sp2g18700 Schrenkiella parvula HOM05D006455 ORTHO05D008098 1.4e-130 470.7 515 49.5
AT5G48340 Arabidopsis thaliana HOM05D006455 ORTHO05D008098 3.2e-130 469.5 514 50.0
AL8G21110 Arabidopsis lyrata HOM05D006455 ORTHO05D008098 4.2e-130 469.2 515 49.9
Sabra14G0133600 Salix brachista HOM05D006455 ORTHO05D008098 6.0e-129 465.3 520 50.6
Medtr8g071270 Medicago truncatula HOM05D006455 ORTHO05D008098 3.0e-128 463.0 495 51.5
Solyc09g020150.4 Solanum lycopersicum HOM05D006455 ORTHO05D008098 5.1e-128 462.2 494 49.4
vmacro02844 Vaccinium macrocarpon HOM05D006455 ORTHO05D008098 2.5e-127 459.9 494 51.6
Peaxi162Scf00315g00814 Petunia axillaris HOM05D006455 ORTHO05D008098 5.6e-127 458.8 494 50.4
Ca_22482_v3 Cicer arietinum L. HOM05D006455 ORTHO05D008098 9.6e-127 458.0 497 50.5
BcaC06g30805 Brassica carinata HOM05D006455 ORTHO05D008098 1.6e-126 457.2 515 48.2
BolC7t44431H Brassica oleracea HOM05D006455 ORTHO05D008098 2.1e-126 456.8 520 48.8
BcaC06g30808 Brassica carinata HOM05D006455 ORTHO05D008098 5.3e-125 452.2 517 48.4
A06p39230 Brassica napus HOM05D006455 ORTHO05D008098 6.9e-125 451.8 518 48.6
BraA06t26837Z Brassica rapa HOM05D006455 ORTHO05D008098 1.2e-124 451.1 519 48.4
C07p39110 Brassica napus HOM05D006455 ORTHO05D008098 2.9e-123 446.4 517 48.0
Aa31LG5G9090 Aethionema arabicum HOM05D006455 ORTHO05D008098 1.1e-122 444.5 510 47.8
Thhalv10003907m.g Eutrema salsugineum HOM05D006455 ORTHO05D008098 1.9e-122 443.7 491 49.7
Manes.12G057900 Manihot esculenta HOM05D006455 ORTHO05D008098 2.7e-121 439.9 495 48.9
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 6.0e-121 438.7 512 46.5
PSO210G0904 Papaver somniferum HOM05D006455 ORTHO05D008098 1.3e-120 437.6 512 48.2
Gohir.D11G150900 Gossypium hirsutum HOM05D006455 ORTHO05D008098 6.7e-120 435.3 387 58.9
PSO210G7796 Papaver somniferum HOM05D006455 ORTHO05D008098 8.7e-120 434.9 513 48.1
Manes.12G058105 Manihot esculenta HOM05D006455 ORTHO05D008098 2.5e-119 433.3 495 49.1
ATR0743G062 Amborella trichopoda HOM05D006455 ORTHO05D008098 1.2e-116 424.5 522 44.4
Os01g0897100 Oryza sativa ssp. japonica HOM05D006455 ORTHO05D008098 5.5e-114 415.6 510 44.7
SHI10210 Sapria himalayana HOM05D006455 ORTHO05D008098 3.9e-112 409.5 520 46.5
Actinidia23129 Actinidia chinensis HOM05D006455 ORTHO05D008098 1.6e-110 404.1 505 46.1
DCAR_000439 Daucus carota HOM05D006455 ORTHO05D008098 1.1e-109 401.4 343 58.6
Ah.11g050710 Amaranthus hybridus HOM05D006455 ORTHO05D008098 8.5e-107 391.7 511 43.8
EL10Ac5g10573 Beta vulgaris HOM05D006455 ORTHO05D008098 6.7e-104 382.1 397 52.4
Zm00001eb144730 Zea mays HOM05D006455 ORTHO05D008098 2.0e-103 380.6 494 43.1
MBI07_g34151_MAGBIO Magnolia biondii HOM05D006455 ORTHO05D008098 9.7e-103 378.3 466 47.2
HPP92_001271 Vanilla planifolia HOM05D006455 ORTHO05D008098 1.4e-93 347.8 329 51.4
SEGI_16096 Sequoiadendron giganteum HOM05D006455 ORTHO05D008098 6.7e-88 328.9 522 37.0
Dinv07639 Davidia involucrata HOM05D006455 ORTHO05D008098 1.1e-87 328.2 389 47.6
Manes.12G058904 Manihot esculenta HOM05D006455 ORTHO05D008098 2.6e-87 327.0 270 60.0
PGSC0003DMG402020303 Solanum tuberosum HOM05D006455 ORTHO05D008098 3.0e-80 303.5 346 48.0
Oeu030353.1 Olea europaea HOM05D006455 ORTHO05D008098 5.9e-76 289.3 326 51.2
Manes.12G057503 Manihot esculenta HOM05D006455 ORTHO05D008098 1.9e-74 284.3 199 67.8
Manes.12G057505 Manihot esculenta HOM05D006455 ORTHO05D008098 1.9e-74 284.3 199 67.8
HPP92_001254 Vanilla planifolia HOM05D006455 ORTHO05D008098 6.6e-67 259.2 220 57.3
Mapoly0109s0061 Marchantia polymorpha HOM05D006455 ORTHO05D008098 4.1e-61 240.0 522 30.8
CDE05G1197 Ceratophyllum demersum HOM05D006455 ORTHO05D008098 2.3e-56 224.2 207 54.6
Pp3c10_13370 Physcomitrium patens HOM05D006455 ORTHO05D008098 2.4e-53 214.2 539 29.9
SMO200G0077 Selaginella moellendorffii HOM05D006455 ORTHO05D008098 1.2e-47 195.3 494 27.7
AagrBONN_evm.TU.Sc2ySwM_228.5553 Anthoceros agrestis HOM05D006455 ORTHO05D008098 6.0e-44 183.0 533 29.5
CBR_g48756 Chara braunii HOM05D006455 ORTHO05D000497 2.1e-36 157.9 279 33.3
Manes.12G057504 Manihot esculenta HOM05D006455 ORTHO05D008098 5.6e-34 149.8 195 45.6
Oeu030354.1 Olea europaea HOM05D006455 ORTHO05D008098 3.2e-29 134.0 116 58.6
EL10Ac5g10574 Beta vulgaris HOM05D006455 ORTHO05D008098 1.1e-24 119.0 115 48.7
Manes.12G060108 Manihot esculenta HOM05D006455 ORTHO05D008098 2.4e-24 117.9 172 44.2
PGSC0003DMG400020304 Solanum tuberosum HOM05D006455 ORTHO05D008098 5.3e-24 116.7 115 47.0
Zm00001eb128100 Zea mays HOM05D006455 ORTHO05D008098 6.9e-24 116.3 143 44.1
Zm00001eb274660 Zea mays HOM05D006455 ORTHO05D008098 1.3e-22 112.1 143 43.4
Zm00001eb128090 Zea mays HOM05D006455 ORTHO05D008098 4.9e-22 110.2 172 35.5
Phvul.003G297266 Phaseolus vulgaris HOM05D006455 ORTHO05D008098 4.6e-20 103.6 117 44.4
Oeu003682.1 Olea europaea HOM05D006455 ORTHO05D008098 4.8e-17 93.6 119 45.4
Cre03.g197250 Chlamydomonas reinhardtii HOM05D006455 ORTHO05D008098 8.4e-14 82.8 225 28.4
Actinidia33399 Actinidia chinensis HOM05D006455 ORTHO05D008098 2.9e-06 57.8 40 60.0


User provided reference genes

Program Settings