Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G2189 Cannabis sativa HOM05D005218 ORTHO05D006657 1.0e-257 892.9 440 100.0
GSVIVG01029830001 Vitis vinifera HOM05D005218 ORTHO05D006657 7.1e-203 710.7 438 77.6
Ciclev10011748m.g Citrus clementina HOM05D005218 ORTHO05D006657 1.2e-202 709.9 438 77.4
Prupe.6G300700 Prunus persica HOM05D005218 ORTHO05D006657 3.5e-202 708.4 442 77.8
Cfa016978 Carpinus fangiana HOM05D005218 ORTHO05D006657 2.3e-201 705.7 438 77.9
Dinv16915 Davidia involucrata HOM05D005218 ORTHO05D006657 6.6e-201 704.1 438 76.7
Atru.chr8.19_Atru.chr8.20 Acer truncatum HOM05D005218 ORTHO05D006657 1.1e-200 703.4 438 76.3
Thecc.04G061600 Theobroma cacao HOM05D005218 ORTHO05D006657 3.3e-200 701.8 433 78.8
QL07p030229 Quercus lobata HOM05D005218 ORTHO05D006657 4.3e-200 701.4 436 76.8
Peaxi162Scf00374g00623 Petunia axillaris HOM05D005218 ORTHO05D006657 1.2e-199 699.9 438 75.3
TWI74G0252 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 2.1e-199 699.1 438 76.5
Duzib268G1588 Durio zibethinus HOM05D005218 ORTHO05D006657 2.8e-199 698.7 429 79.3
Manes.09G119600 Manihot esculenta HOM05D005218 ORTHO05D006657 8.1e-199 697.2 440 75.9
Gohir.A02G000400 Gossypium hirsutum HOM05D005218 ORTHO05D006657 1.4e-198 696.4 439 77.7
MD04G1181300 Malus domestica HOM05D005218 ORTHO05D006657 4.0e-198 694.9 441 75.3
arahy.Tifrunner.gnm1.ann1.6F524X Arachis hypogaea HOM05D005218 ORTHO05D006657 1.2e-197 693.3 433 76.0
Gorai.005G001100 Gossypium raimondii HOM05D005218 ORTHO05D006657 1.2e-197 693.3 439 77.2
PGR004G2278 Punica granatum HOM05D005218 ORTHO05D006657 2.6e-197 692.2 438 75.8
Gohir.D02G000700 Gossypium hirsutum HOM05D005218 ORTHO05D006657 3.4e-197 691.8 439 77.0
Hma1.2p1_1020F.1_g248500 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 3.4e-197 691.8 439 75.4
VMungo0331G1207 Vigna mungo HOM05D005218 ORTHO05D006657 1.7e-196 689.5 433 74.4
TAR369G0292 Trochodendron aralioides HOM05D005218 ORTHO05D006657 2.2e-196 689.1 439 76.3
MD12G1196200 Malus domestica HOM05D005218 ORTHO05D006657 4.9e-196 688.0 441 75.3
Glyma.16G222300 Glycine max HOM05D005218 ORTHO05D006657 6.4e-196 687.6 433 75.8
Potri.016G143700 Populus trichocarpa HOM05D005218 ORTHO05D006657 1.4e-195 686.4 441 77.1
arahy.Tifrunner.gnm1.ann1.M7CUXC Arachis hypogaea HOM05D005218 ORTHO05D006657 2.4e-195 685.6 433 75.5
TWI77G0041 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 2.4e-195 685.6 438 75.6
Phvul.010G060400 Phaseolus vulgaris HOM05D005218 ORTHO05D006657 3.2e-195 685.3 439 73.1
Eucgr.K01318 Eucalyptus grandis HOM05D005218 ORTHO05D006657 1.6e-194 682.9 438 74.0
Glyma.03G000700 Glycine max HOM05D005218 ORTHO05D006657 2.7e-194 682.2 437 74.8
COL.COLO4_20050 Corchorus olitorius HOM05D005218 ORTHO05D006657 3.5e-194 681.8 439 75.9
CAN.G455.1 Capsicum annuum HOM05D005218 ORTHO05D006657 4.6e-194 681.4 440 74.8
Manes.08G165900 Manihot esculenta HOM05D005218 ORTHO05D006657 1.0e-193 680.2 433 75.8
CSS0045446 Camellia sinensis var. sinensis HOM05D005218 ORTHO05D006657 1.7e-193 679.5 439 73.3
Solyc10g074690.2 Solanum lycopersicum HOM05D005218 ORTHO05D006657 1.7e-193 679.5 433 74.6
Ca_23103_v3 Cicer arietinum L. HOM05D005218 ORTHO05D006657 3.9e-193 678.3 431 73.5
RcHm_v2.0_Chr3g0459311 Rosa chinensis HOM05D005218 ORTHO05D006657 1.5e-192 676.4 441 75.1
Cc06_g00030 Coffea canephora HOM05D005218 ORTHO05D006657 3.3e-192 675.2 433 74.6
Sopen10g027170 Solanum pennellii HOM05D005218 ORTHO05D006657 3.3e-192 675.2 433 74.1
Nn5g26729 Nelumbo nucifera HOM05D005218 ORTHO05D006657 3.2e-187 658.7 430 72.1
Ah.04g166670 Amaranthus hybridus HOM05D005218 ORTHO05D006657 4.2e-187 658.3 430 73.7
Lsat_1_v5_gn_8_108900 Lactuca sativa HOM05D005218 ORTHO05D006657 5.4e-187 657.9 434 71.9
FAN02G3856 Fragaria x ananassa HOM05D005218 ORTHO05D006657 1.6e-186 656.4 441 72.1
MSTRG.5474 Avicennia marina HOM05D005218 ORTHO05D006657 2.7e-186 655.6 436 72.0
Migut.J00001 Erythranthe guttata HOM05D005218 ORTHO05D006657 2.3e-185 652.5 430 71.9
Lalb_Chr13g0290271 Lupinus albus HOM05D005218 ORTHO05D006657 5.1e-185 651.4 435 73.1
Hund19374 Selenicereus undatus HOM05D005218 ORTHO05D006657 7.3e-184 647.5 432 71.5
Aqoxy2G00608 Aquilegia oxysepala HOM05D005218 ORTHO05D006657 9.6e-184 647.1 433 71.1
Lj2A53G27 Lonicera japonica HOM05D005218 ORTHO05D006657 1.3e-183 646.7 463 69.5
ECA236G4239 Erigeron canadensis HOM05D005218 ORTHO05D006657 1.1e-182 643.7 432 70.8
MBI15_g33472_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 1.1e-182 643.7 428 71.3
ECA248G3767 Erigeron canadensis HOM05D005218 ORTHO05D006657 5.3e-182 641.3 432 70.4
Rhsim04G0119400 Rhododendron simsii HOM05D005218 ORTHO05D006657 1.5e-181 639.8 478 65.3
Sed0017962 Sechium edule HOM05D005218 ORTHO05D006657 7.6e-181 637.5 431 71.7
MELO3C025278.2 Cucumis melo HOM05D005218 ORTHO05D006657 2.9e-180 635.6 431 71.9
Medtr8g005040 Medicago truncatula HOM05D005218 ORTHO05D006657 3.8e-180 635.2 433 71.4
Sabra04G0159600 Salix brachista HOM05D005218 ORTHO05D006657 8.4e-180 634.0 445 71.2
Sabra06G0088900 Salix brachista HOM05D005218 ORTHO05D006657 1.1e-179 633.6 434 71.9
CsaV3_4G013540 Cucumis sativus L. HOM05D005218 ORTHO05D006657 1.4e-179 633.3 431 71.5
HanXRQChr14g0445831 Helianthus annuus HOM05D005218 ORTHO05D006657 3.2e-179 632.1 443 70.2
HanXRQChr11g0329321 Helianthus annuus HOM05D005218 ORTHO05D006657 2.7e-178 629.0 426 70.2
AL6G10010 Arabidopsis lyrata HOM05D005218 ORTHO05D006657 7.9e-178 627.5 432 70.4
CARHR212360 Cardamine hirsuta HOM05D005218 ORTHO05D006657 1.0e-177 627.1 430 70.7
AT5G01010 Arabidopsis thaliana HOM05D005218 ORTHO05D006657 3.0e-177 625.5 432 70.4
Thhalv10013603m.g Eutrema salsugineum HOM05D005218 ORTHO05D006657 2.5e-176 622.5 430 70.0
Carub.0024s0001 Capsella rubella HOM05D005218 ORTHO05D006657 2.1e-175 619.4 433 69.5
Sp6g41230 Schrenkiella parvula HOM05D005218 ORTHO05D006657 2.8e-175 619.0 430 70.0
THA.LOC104816146 Tarenaya hassleriana HOM05D005218 ORTHO05D006657 3.1e-174 615.5 440 69.3
unitig_699.g19018 Utricularia gibba HOM05D005218 ORTHO05D006657 6.9e-174 614.4 429 67.6
BcaB01g06261 Brassica carinata HOM05D005218 ORTHO05D006657 1.2e-173 613.6 430 70.0
SGA_v2.0_scaffold85G26585 Striga asiatica HOM05D005218 ORTHO05D006657 1.5e-173 613.2 527 58.8
PSO384G1586 Papaver somniferum HOM05D005218 ORTHO05D006657 2.6e-173 612.5 431 66.4
Nitab4.5_0002139g0070 Nicotiana tabacum HOM05D005218 ORTHO05D006657 2.9e-172 609.0 440 69.1
DCAR_023955 Daucus carota HOM05D005218 ORTHO05D006657 1.9e-171 606.3 516 58.9
Nitab4.5_0003037g0020 Nicotiana tabacum HOM05D005218 ORTHO05D006657 2.5e-171 605.9 440 68.9
BcaC03g13099 Brassica carinata HOM05D005218 ORTHO05D006657 3.5e-170 602.1 429 68.8
Zm00001eb284640 Zea mays HOM05D005218 ORTHO05D006657 3.0e-169 599.0 437 65.7
CDE06G0216 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 5.1e-169 598.2 433 65.1
Aa31LG5G11280 Aethionema arabicum HOM05D005218 ORTHO05D006657 6.7e-169 597.8 415 68.7
BraA03t09386Z Brassica rapa HOM05D005218 ORTHO05D006657 5.6e-168 594.7 472 63.8
BraA02t04669Z Brassica rapa HOM05D005218 ORTHO05D006657 6.2e-167 591.3 474 62.7
BNapus_Darmor_BZH_scaffold_209p00020 Brassica napus HOM05D005218 ORTHO05D006657 1.2e-165 587.0 415 68.7
Actinidia20812 Actinidia chinensis HOM05D005218 ORTHO05D006657 1.5e-165 586.6 375 75.2
BolC2t05996H Brassica oleracea HOM05D005218 ORTHO05D006657 8.4e-164 580.9 473 62.4
PSO339G0748 Papaver somniferum HOM05D005218 ORTHO05D006657 1.1e-163 580.5 445 62.7
FAN05G1148 Fragaria x ananassa HOM05D005218 ORTHO05D006657 1.2e-162 577.0 443 65.5
Os05g0306000 Oryza sativa ssp. japonica HOM05D005218 ORTHO05D006657 1.5e-160 570.1 432 64.8
EL10Ac4g10395 Beta vulgaris HOM05D005218 ORTHO05D006657 6.3e-159 564.7 421 66.7
ClCG04G005100 Citrullus lanatus HOM05D005218 ORTHO05D006657 6.3e-159 564.7 431 66.1
Lj3g0026233 Lotus japonicus HOM05D005218 ORTHO05D006657 3.1e-158 562.4 376 72.6
Sabra04G0159700 Salix brachista HOM05D005218 ORTHO05D006657 9.0e-158 560.8 430 67.2
FAN14G0475 Fragaria x ananassa HOM05D005218 ORTHO05D006657 1.3e-156 557.0 380 71.8
Hma1.2p1_1020F.1_g248520 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 1.7e-156 556.6 362 74.9
Sc02g0000100 Simmondsia chinensis HOM05D005218 ORTHO05D006657 2.2e-156 556.2 379 71.5
FvH4_6g09090 Fragaria vesca HOM05D005218 ORTHO05D006657 1.9e-155 553.1 380 71.6
Haze_21230 Corylus avellana HOM05D005218 ORTHO05D006657 1.0e-153 547.4 456 62.7
TPR.G30733 Trifolium pratense HOM05D005218 ORTHO05D006657 6.7e-153 544.7 726 43.4
Psat2g191240 Pisum sativum HOM05D005218 ORTHO05D006657 9.1e-150 534.3 362 71.8
vmacro08964 Vaccinium macrocarpon HOM05D005218 ORTHO05D006657 9.1e-142 507.7 702 42.9
Lsat_1_v5_gn_5_153501 Lactuca sativa HOM05D005218 ORTHO05D006657 2.6e-141 506.1 430 60.0
AagrBONN_evm.TU.Sc2ySwM_228.4747 Anthoceros agrestis HOM05D005218 ORTHO05D006657 4.4e-136 488.8 437 56.1
QL07p030634 Quercus lobata HOM05D005218 ORTHO05D006657 1.5e-131 473.8 300 76.7
FAN09G2324 Fragaria x ananassa HOM05D005218 ORTHO05D006657 3.4e-128 462.6 320 71.6
SMO198G0089 Selaginella moellendorffii HOM05D005218 ORTHO05D006657 7.5e-128 461.5 432 52.8
BolC3t12584H Brassica oleracea HOM05D005218 ORTHO05D006657 2.7e-122 443.0 339 66.7
Mapoly0045s0012 Marchantia polymorpha HOM05D005218 ORTHO05D006657 3.6e-122 442.6 443 49.0
Oeu027654.1 Olea europaea HOM05D005218 ORTHO05D006657 1.5e-120 437.2 285 74.4
BcaB01g06128 Brassica carinata HOM05D005218 ORTHO05D006657 9.1e-118 427.9 341 63.3
CBR_g279 Chara braunii HOM05D005218 ORTHO05D006657 1.9e-107 393.7 436 49.1
Pp3c6_1360 Physcomitrium patens HOM05D005218 ORTHO05D006657 2.0e-101 373.6 359 52.4
Cpa.g.sc1919.1 Carica papaya HOM05D005218 ORTHO05D006657 3.7e-95 352.8 222 78.8
MBI03_g45858_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 4.3e-91 339.3 254 66.5
AUR62006464 Chenopodium quinoa HOM05D005218 ORTHO05D006657 1.1e-86 324.7 219 73.1
RcHm_v2.0_Chr4g0423451 Rosa chinensis HOM05D005218 ORTHO05D006657 3.3e-75 286.6 237 65.4
RcHm_v2.0_Chr2g0142661 Rosa chinensis HOM05D005218 ORTHO05D006657 5.6e-67 259.2 283 53.0
RcHm_v2.0_Chr3g0481991 Rosa chinensis HOM05D005218 ORTHO05D006657 7.3e-67 258.8 215 65.1
Actinidia32581 Actinidia chinensis HOM05D005218 ORTHO05D006657 4.8e-66 256.1 439 40.1
CiPaw.09G224300 Carya illinoinensis HOM05D005218 ORTHO05D006657 6.9e-65 252.3 161 77.0
PRCOL_00004779 Prasinoderma coloniale HOM05D005218 ORTHO05D006657 3.4e-64 250.0 433 35.1
Actinidia35793 Actinidia chinensis HOM05D005218 ORTHO05D006657 1.3e-60 238.0 140 77.1
CiPaw.09G224400 Carya illinoinensis HOM05D005218 ORTHO05D006657 1.2e-53 214.9 140 74.3
SEGI_33787 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 7.9e-53 212.2 159 65.4
CDE07G0921 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 5.7e-51 206.1 133 75.2
AUR62029820 Chenopodium quinoa HOM05D005218 ORTHO05D006657 2.8e-50 203.8 142 69.0
CDE07G0273 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 1.1e-41 175.3 149 51.0
Cre02.g117950 Chlamydomonas reinhardtii HOM05D005218 ORTHO05D006657 1.5e-40 171.4 319 34.8
A07p02820 Brassica napus HOM05D005218 ORTHO05D006657 2.0e-35 154.5 200 47.0
BraA07t28080Z Brassica rapa HOM05D005218 ORTHO05D006657 1.3e-34 151.8 193 47.7
Sabra12G0043200 Salix brachista HOM05D005218 ORTHO05D006657 7.2e-30 136.0 146 54.1
RcHm_v2.0_Chr3g0494831 Rosa chinensis HOM05D005218 ORTHO05D006657 3.3e-27 127.1 97 59.8
CDE07G0892 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 2.2e-26 124.4 120 54.2
Lsat_1_v5_gn_8_105921 Lactuca sativa HOM05D005218 ORTHO05D002018 4.0e-20 103.6 77 57.1
Carub.0005s0002 Capsella rubella HOM05D005218 ORTHO05D006657 2.0e-19 101.3 55 76.4
Lsat_1_v5_gn_2_39840 Lactuca sativa HOM05D000613 ORTHO05D000446 1.1e-17 95.5 71 60.6
SEGI_25208 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 4.1e-17 93.6 85 48.2
Lsat_1_v5_gn_8_9201 Lactuca sativa HOM05D005218 ORTHO05D000446 7.0e-17 92.8 71 60.6
Lsat_1_v5_gn_4_157281 Lactuca sativa HOM05D005218 ORTHO05D000446 4.5e-16 90.1 71 59.2
BcaB01g06129 Brassica carinata HOM05D005218 ORTHO05D006657 1.4e-12 78.6 54 72.2
Lsat_1_v5_gn_5_172481 Lactuca sativa HOM05D001702 ORTHO05D001791 3.7e-10 70.5 42 69.0
MBI07_g27400_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 8.3e-10 69.3 47 66.0
Duzib151G1109 Durio zibethinus HOM05D005218 ORTHO05D000596 1.8e-09 68.2 43 69.8
RcHm_v2.0_Chr2g0163341 Rosa chinensis HOM05D005218 ORTHO05D006657 3.8e-07 60.5 39 71.8
MD00G1001200 Malus domestica HOM05D005218 ORTHO05D006657 7.2e-06 56.2 35 71.4


User provided reference genes

Program Settings